Wall clock time and date at job start Tue Mar 31 2020 12:10:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00040 * 2 1 4 4 H 1.48500 * 109.47009 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47110 * 299.99699 * 3 2 1 6 6 H 1.48498 * 109.47146 * 59.99508 * 3 2 1 7 7 C 1.38808 * 119.99755 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99931 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00058 * 0.02562 * 7 2 1 10 10 C 1.48152 * 126.40850 * 359.95325 * 9 7 2 11 11 C 1.55288 * 107.04628 * 175.11409 * 10 9 7 12 12 C 1.53431 * 101.41510 * 337.03005 * 11 10 9 13 13 H 1.08997 * 111.72426 * 281.64778 * 12 11 10 14 14 C 1.52238 * 114.18118 * 153.47533 * 12 11 10 15 15 N 1.47717 * 106.36772 * 190.52102 * 14 12 11 16 16 C 1.34771 * 119.68809 * 232.33801 * 15 14 12 17 17 O 1.21284 * 120.00158 * 359.72572 * 16 15 14 18 18 C 1.50703 * 120.00130 * 179.72348 * 16 15 14 19 19 C 1.53001 * 109.47282 * 179.97438 * 18 16 15 20 20 C 1.50695 * 109.47085 * 180.02562 * 19 18 16 21 21 C 1.34517 * 125.78767 * 90.00423 * 20 19 18 22 22 C 1.41389 * 106.83943 * 179.97438 * 21 20 19 23 23 C 1.34509 * 106.83882 * 0.02562 * 22 21 20 24 24 O 1.34298 * 108.42636 * 359.73570 * 23 22 21 25 25 C 1.46606 * 120.62806 * 52.05933 * 15 14 12 26 26 C 1.53954 * 110.57351 * 312.17414 * 25 15 14 27 27 C 1.45472 * 126.40078 * 179.97438 * 9 7 2 28 28 H 1.08999 * 109.26422 * 94.42064 * 27 9 7 29 29 H 0.96999 * 119.99703 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.91864 * 294.46329 * 10 9 7 31 31 H 1.09000 * 109.91879 * 55.75892 * 10 9 7 32 32 H 1.08995 * 110.95735 * 95.65717 * 11 10 9 33 33 H 1.09000 * 110.95511 * 219.34963 * 11 10 9 34 34 H 1.09001 * 110.06937 * 71.31595 * 14 12 11 35 35 H 1.08992 * 110.07352 * 309.73893 * 14 12 11 36 36 H 1.08996 * 109.47526 * 300.00214 * 18 16 15 37 37 H 1.09005 * 109.47039 * 60.00194 * 18 16 15 38 38 H 1.08996 * 109.47140 * 300.00604 * 19 18 16 39 39 H 1.09005 * 109.46800 * 60.00201 * 19 18 16 40 40 H 1.07993 * 126.58262 * 0.03566 * 21 20 19 41 41 H 1.07996 * 126.57367 * 179.97438 * 22 21 20 42 42 H 1.08006 * 125.78865 * 180.02562 * 23 22 21 43 43 H 1.09000 * 109.25055 * 72.45662 * 25 15 14 44 44 H 1.08998 * 109.25615 * 191.92803 * 25 15 14 45 45 H 1.09000 * 109.87522 * 170.51641 * 26 25 15 46 46 H 1.08999 * 109.88356 * 291.59341 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8914 2.3965 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 -0.1468 -2.5534 0.0010 11 6 -0.4341 -4.0742 -0.1257 12 6 0.8646 -4.5760 -0.7703 13 1 0.8904 -4.3687 -1.8400 14 6 1.1890 -6.0322 -0.4674 15 7 2.5699 -6.2583 -0.9409 16 6 2.8307 -7.2871 -1.7714 17 8 1.9346 -8.0251 -2.1227 18 6 4.2358 -7.5205 -2.2637 19 6 4.2573 -8.7424 -3.1843 20 6 5.6624 -8.9762 -3.6761 21 6 6.5895 -9.7423 -3.0735 22 6 7.7548 -9.6792 -3.8717 23 6 7.4702 -8.8779 -4.9140 24 8 6.1999 -8.4594 -4.7932 25 6 3.6583 -5.3705 -0.5207 26 6 3.2475 -3.8959 -0.6847 27 6 1.9078 -3.7211 0.0005 28 1 1.9791 -4.0824 1.0264 29 1 -0.4850 0.8401 -0.0004 30 1 -0.5629 -2.1732 0.9340 31 1 -0.5804 -2.0216 -0.8460 32 1 -0.5949 -4.5235 0.8543 33 1 -1.2861 -4.2567 -0.7806 34 1 0.4993 -6.6875 -0.9994 35 1 1.1270 -6.2140 0.6055 36 1 4.5782 -6.6444 -2.8143 37 1 4.8945 -7.6954 -1.4130 38 1 3.9150 -9.6184 -2.6334 39 1 3.5985 -8.5680 -4.0350 40 1 6.4670 -10.2994 -2.1565 41 1 8.6934 -10.1779 -3.6807 42 1 8.1470 -8.6191 -5.7149 43 1 3.8957 -5.5633 0.5255 44 1 4.5392 -5.5678 -1.1315 45 1 3.9905 -3.2500 -0.2168 46 1 3.1568 -3.6518 -1.7432 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036644969.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:27 Heat of formation + Delta-G solvation = 5.869888 kcal Electronic energy + Delta-G solvation = -26782.841581 eV Core-core repulsion = 23060.750488 eV Total energy + Delta-G solvation = -3722.091094 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.77390 -40.30211 -38.38344 -35.41824 -34.31560 -33.04330 -32.66391 -31.58382 -30.00396 -28.95009 -27.96630 -25.24043 -24.59287 -23.00627 -22.36917 -21.96901 -20.60995 -20.09290 -19.75889 -18.80832 -17.77081 -16.97028 -16.29173 -16.23941 -15.87892 -15.60516 -15.07169 -14.68079 -14.33057 -14.12469 -13.85843 -13.67510 -13.09468 -13.04128 -13.04063 -12.90400 -12.58417 -12.52198 -12.36501 -12.12312 -11.65106 -11.49239 -11.42690 -11.29367 -10.86424 -10.82397 -10.73884 -10.17120 -10.14570 -10.08829 -9.92798 -9.69434 -9.64853 -9.46795 -8.67727 -8.64785 -8.52397 -6.85713 -5.73623 -3.06927 1.49549 2.37771 2.64919 2.74486 3.10614 3.37708 3.42834 3.45614 4.30202 4.46996 4.65708 4.74023 4.75675 4.81517 4.95305 4.99836 5.08546 5.22440 5.30299 5.35577 5.46606 5.53366 5.56944 5.58891 5.59695 5.71894 5.76459 5.78993 5.87812 5.93402 6.01938 6.13731 6.16436 6.21409 6.27811 6.34132 6.47286 6.60187 6.62494 6.82026 6.92652 7.04972 7.46484 7.53693 7.60166 7.79393 8.19675 8.22371 9.17286 9.80956 10.48943 11.38954 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.018060 B = 0.002806 C = 0.002517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.041903 B = 9975.652073 C =11123.517758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.009 4.009 3 Si 0.909 3.091 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.225 4.225 8 H 0.079 0.921 9 N -0.595 5.595 10 C 0.177 3.823 11 C -0.137 4.137 12 C -0.123 4.123 13 H 0.080 0.920 14 C 0.125 3.875 15 N -0.606 5.606 16 C 0.513 3.487 17 O -0.550 6.550 18 C -0.138 4.138 19 C -0.025 4.025 20 C -0.006 4.006 21 C -0.212 4.212 22 C -0.215 4.215 23 C -0.045 4.045 24 O -0.175 6.175 25 C 0.110 3.890 26 C -0.130 4.130 27 C 0.167 3.833 28 H 0.020 0.980 29 H 0.252 0.748 30 H 0.038 0.962 31 H 0.055 0.945 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.089 0.911 35 H 0.068 0.932 36 H 0.098 0.902 37 H 0.097 0.903 38 H 0.101 0.899 39 H 0.090 0.910 40 H 0.148 0.852 41 H 0.147 0.853 42 H 0.201 0.799 43 H 0.066 0.934 44 H 0.080 0.920 45 H 0.077 0.923 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.825 -17.980 -4.706 22.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.205 4.205 3 Si 0.740 3.260 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.354 4.354 8 H 0.097 0.903 9 N -0.320 5.320 10 C 0.052 3.948 11 C -0.176 4.176 12 C -0.144 4.144 13 H 0.099 0.901 14 C 0.004 3.996 15 N -0.339 5.339 16 C 0.301 3.699 17 O -0.428 6.428 18 C -0.178 4.178 19 C -0.062 4.062 20 C -0.057 4.057 21 C -0.231 4.231 22 C -0.234 4.234 23 C -0.113 4.113 24 O -0.071 6.071 25 C -0.014 4.014 26 C -0.169 4.169 27 C 0.058 3.942 28 H 0.038 0.962 29 H 0.062 0.938 30 H 0.056 0.944 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.108 0.892 35 H 0.087 0.913 36 H 0.116 0.884 37 H 0.115 0.885 38 H 0.120 0.880 39 H 0.108 0.892 40 H 0.165 0.835 41 H 0.165 0.835 42 H 0.218 0.782 43 H 0.085 0.915 44 H 0.098 0.902 45 H 0.095 0.905 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 11.151 -17.906 -5.053 21.691 hybrid contribution 0.818 0.963 0.150 1.272 sum 11.969 -16.943 -4.903 21.316 Atomic orbital electron populations 1.69954 1.04898 1.24929 1.57072 1.24800 0.95683 0.97657 1.02355 0.86081 0.78701 0.83957 0.77239 1.20525 1.21808 1.21795 1.19036 0.90365 0.82320 1.43629 0.90337 1.44231 1.01667 0.99483 1.86605 1.21534 0.83906 0.88361 1.00971 1.22661 0.95873 0.99765 0.99282 1.22599 0.97821 0.93311 1.00659 0.90147 1.21645 0.81709 0.97112 0.99178 1.48337 1.09875 1.28428 1.47219 1.20518 0.90639 0.80459 0.78253 1.90680 1.47579 1.46674 1.57879 1.21713 0.95285 0.99876 1.00893 1.19862 0.87720 0.99031 0.99596 1.22509 0.96940 0.98974 0.87235 1.21624 0.93504 1.04975 1.03035 1.21840 1.00400 1.04162 0.96976 1.24036 0.84136 1.00975 1.02108 1.84045 1.25104 1.58986 1.38963 1.21831 0.88720 0.90632 1.00200 1.21883 0.99485 0.93455 1.02096 1.20640 0.91126 0.87290 0.95099 0.96241 0.93800 0.94388 0.92721 0.92231 0.92080 0.89232 0.91344 0.88358 0.88455 0.88030 0.89185 0.83467 0.83548 0.78208 0.91533 0.90176 0.90493 0.91348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.78 10.44 55.49 0.58 -26.20 16 2 C -0.01 -0.24 5.49 -17.43 -0.10 -0.34 16 3 Si 0.91 21.76 29.55 -169.99 -5.02 16.73 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 7 C -0.23 -6.04 9.88 -15.06 -0.15 -6.19 16 8 H 0.08 2.02 7.24 -52.49 -0.38 1.64 16 9 N -0.60 -14.61 3.34 -163.13 -0.55 -15.15 16 10 C 0.18 4.21 5.43 -1.92 -0.01 4.20 16 11 C -0.14 -2.51 6.51 -25.29 -0.16 -2.68 16 12 C -0.12 -2.16 2.84 -89.54 -0.25 -2.42 16 13 H 0.08 1.54 8.12 -51.93 -0.42 1.12 16 14 C 0.13 1.87 5.93 -3.76 -0.02 1.85 16 15 N -0.61 -8.31 3.00 -172.49 -0.52 -8.82 16 16 C 0.51 6.91 7.67 -10.99 -0.08 6.82 16 17 O -0.55 -9.06 15.34 5.55 0.09 -8.98 16 18 C -0.14 -1.37 4.01 -27.88 -0.11 -1.48 16 19 C -0.02 -0.24 5.04 -27.89 -0.14 -0.38 16 20 C -0.01 -0.07 6.58 -35.63 -0.23 -0.30 16 21 C -0.21 -1.98 10.81 -39.70 -0.43 -2.41 16 22 C -0.21 -1.82 10.91 -39.70 -0.43 -2.25 16 23 C -0.04 -0.38 12.09 29.41 0.36 -0.02 16 24 O -0.17 -1.90 10.65 5.71 0.06 -1.83 16 25 C 0.11 1.35 6.22 -3.49 -0.02 1.32 16 26 C -0.13 -2.10 5.47 -27.00 -0.15 -2.25 16 27 C 0.17 3.23 2.57 -68.01 -0.18 3.06 16 28 H 0.02 0.40 7.94 -51.93 -0.41 -0.01 16 29 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 30 H 0.04 0.99 7.77 -51.93 -0.40 0.59 16 31 H 0.05 1.45 7.21 -51.93 -0.37 1.08 16 32 H 0.06 1.01 8.12 -51.93 -0.42 0.58 16 33 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.09 1.38 6.99 -51.93 -0.36 1.02 16 35 H 0.07 0.96 8.08 -51.93 -0.42 0.55 16 36 H 0.10 0.94 7.55 -51.93 -0.39 0.54 16 37 H 0.10 0.79 7.99 -51.93 -0.41 0.38 16 38 H 0.10 0.96 8.10 -51.93 -0.42 0.54 16 39 H 0.09 0.97 8.10 -51.93 -0.42 0.55 16 40 H 0.15 1.13 8.06 -52.49 -0.42 0.70 16 41 H 0.15 0.91 8.06 -52.49 -0.42 0.49 16 42 H 0.20 0.93 8.06 -52.48 -0.42 0.51 16 43 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.08 0.78 5.83 -51.93 -0.30 0.48 16 45 H 0.08 1.26 7.65 -51.93 -0.40 0.86 16 46 H 0.07 1.18 8.12 -51.93 -0.42 0.76 16 LS Contribution 364.68 15.07 5.50 5.50 Total: -1.00 -32.24 364.68 -9.20 -41.44 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -7.22 Total: 0.77 kcal Atomic # 6 Polarization: -1.34 SS G_CDS: -2.12 Total: -3.46 kcal Atomic # 7 Polarization: -49.69 SS G_CDS: -0.48 Total: -50.17 kcal Atomic # 8 Polarization: -10.96 SS G_CDS: 0.15 Total: -10.81 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.24 -9.20 -41.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036644969.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.312 kcal (2) G-P(sol) polarization free energy of solvation -32.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.442 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds