Wall clock time and date at job start Tue Mar 31 2020 12:10:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00040 * 2 1 4 4 H 1.48500 * 109.47009 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47110 * 299.99699 * 3 2 1 6 6 H 1.48498 * 109.47146 * 59.99508 * 3 2 1 7 7 C 1.38808 * 119.99755 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99931 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00058 * 0.02562 * 7 2 1 10 10 C 1.48152 * 126.40850 * 359.95325 * 9 7 2 11 11 C 1.55288 * 107.04628 * 175.11409 * 10 9 7 12 12 C 1.53431 * 101.41510 * 337.03005 * 11 10 9 13 13 H 1.08997 * 111.72426 * 281.64778 * 12 11 10 14 14 C 1.52238 * 114.18118 * 153.47533 * 12 11 10 15 15 N 1.47717 * 106.36772 * 190.52102 * 14 12 11 16 16 C 1.34771 * 119.68809 * 232.33801 * 15 14 12 17 17 O 1.21284 * 120.00158 * 359.72572 * 16 15 14 18 18 C 1.50703 * 120.00130 * 179.72348 * 16 15 14 19 19 C 1.53001 * 109.47282 * 179.97438 * 18 16 15 20 20 C 1.50695 * 109.47085 * 180.02562 * 19 18 16 21 21 C 1.34517 * 125.78767 * 90.00423 * 20 19 18 22 22 C 1.41389 * 106.83943 * 179.97438 * 21 20 19 23 23 C 1.34509 * 106.83882 * 0.02562 * 22 21 20 24 24 O 1.34298 * 108.42636 * 359.73570 * 23 22 21 25 25 C 1.46606 * 120.62806 * 52.05933 * 15 14 12 26 26 C 1.53954 * 110.57351 * 312.17414 * 25 15 14 27 27 C 1.45472 * 126.40078 * 179.97438 * 9 7 2 28 28 H 1.08999 * 109.26422 * 94.42064 * 27 9 7 29 29 H 0.96999 * 119.99703 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.91864 * 294.46329 * 10 9 7 31 31 H 1.09000 * 109.91879 * 55.75892 * 10 9 7 32 32 H 1.08995 * 110.95735 * 95.65717 * 11 10 9 33 33 H 1.09000 * 110.95511 * 219.34963 * 11 10 9 34 34 H 1.09001 * 110.06937 * 71.31595 * 14 12 11 35 35 H 1.08992 * 110.07352 * 309.73893 * 14 12 11 36 36 H 1.08996 * 109.47526 * 300.00214 * 18 16 15 37 37 H 1.09005 * 109.47039 * 60.00194 * 18 16 15 38 38 H 1.08996 * 109.47140 * 300.00604 * 19 18 16 39 39 H 1.09005 * 109.46800 * 60.00201 * 19 18 16 40 40 H 1.07993 * 126.58262 * 0.03566 * 21 20 19 41 41 H 1.07996 * 126.57367 * 179.97438 * 22 21 20 42 42 H 1.08006 * 125.78865 * 180.02562 * 23 22 21 43 43 H 1.09000 * 109.25055 * 72.45662 * 25 15 14 44 44 H 1.08998 * 109.25615 * 191.92803 * 25 15 14 45 45 H 1.09000 * 109.87522 * 170.51641 * 26 25 15 46 46 H 1.08999 * 109.88356 * 291.59341 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8914 2.3965 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 -0.1468 -2.5534 0.0010 11 6 -0.4341 -4.0742 -0.1257 12 6 0.8646 -4.5760 -0.7703 13 1 0.8904 -4.3687 -1.8400 14 6 1.1890 -6.0322 -0.4674 15 7 2.5699 -6.2583 -0.9409 16 6 2.8307 -7.2871 -1.7714 17 8 1.9346 -8.0251 -2.1227 18 6 4.2358 -7.5205 -2.2637 19 6 4.2573 -8.7424 -3.1843 20 6 5.6624 -8.9762 -3.6761 21 6 6.5895 -9.7423 -3.0735 22 6 7.7548 -9.6792 -3.8717 23 6 7.4702 -8.8779 -4.9140 24 8 6.1999 -8.4594 -4.7932 25 6 3.6583 -5.3705 -0.5207 26 6 3.2475 -3.8959 -0.6847 27 6 1.9078 -3.7211 0.0005 28 1 1.9791 -4.0824 1.0264 29 1 -0.4850 0.8401 -0.0004 30 1 -0.5629 -2.1732 0.9340 31 1 -0.5804 -2.0216 -0.8460 32 1 -0.5949 -4.5235 0.8543 33 1 -1.2861 -4.2567 -0.7806 34 1 0.4993 -6.6875 -0.9994 35 1 1.1270 -6.2140 0.6055 36 1 4.5782 -6.6444 -2.8143 37 1 4.8945 -7.6954 -1.4130 38 1 3.9150 -9.6184 -2.6334 39 1 3.5985 -8.5680 -4.0350 40 1 6.4670 -10.2994 -2.1565 41 1 8.6934 -10.1779 -3.6807 42 1 8.1470 -8.6191 -5.7149 43 1 3.8957 -5.5633 0.5255 44 1 4.5392 -5.5678 -1.1315 45 1 3.9905 -3.2500 -0.2168 46 1 3.1568 -3.6518 -1.7432 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036644969.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:27 Heat of formation + Delta-G solvation = -12.784580 kcal Electronic energy + Delta-G solvation = -26783.650500 eV Core-core repulsion = 23060.750488 eV Total energy + Delta-G solvation = -3722.900012 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.44032 -41.49877 -39.78200 -36.81243 -35.15598 -34.48782 -33.66296 -33.00892 -31.48819 -30.17167 -29.20308 -26.73385 -25.91497 -24.22461 -23.71781 -22.61653 -21.88128 -21.35992 -21.08832 -19.94898 -18.77160 -18.27672 -17.55245 -17.12910 -16.95391 -16.80325 -16.56348 -15.98647 -15.70957 -15.42641 -15.13478 -14.84243 -14.52751 -14.21740 -13.99553 -13.80062 -13.67649 -13.52188 -13.36216 -13.19625 -13.08740 -13.07221 -12.90146 -12.71246 -12.45230 -12.11996 -12.01272 -11.95748 -11.74239 -11.61192 -11.52480 -11.00387 -10.82605 -10.75897 -10.71317 -9.67024 -9.33640 -8.86709 -7.82904 -5.17274 0.82925 1.46459 1.46965 1.56947 1.61378 1.74125 1.96412 2.22530 2.51015 3.36282 3.39919 3.54902 3.85124 3.86115 3.92697 4.01063 4.05482 4.11134 4.20914 4.23167 4.24990 4.35606 4.42201 4.52347 4.56958 4.67378 4.74199 4.76695 4.84743 4.86114 4.93437 4.98325 5.01673 5.06968 5.09324 5.12042 5.24039 5.29512 5.47506 5.55864 5.57076 5.67076 5.67543 5.77053 6.21483 6.27305 6.41293 7.09969 7.14934 7.80490 8.49291 9.29340 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.018060 B = 0.002806 C = 0.002517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.041903 B = 9975.652073 C =11123.517758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.073 4.073 3 Si 0.974 3.026 4 H -0.261 1.261 5 H -0.297 1.297 6 H -0.296 1.296 7 C -0.226 4.226 8 H 0.089 0.911 9 N -0.617 5.617 10 C 0.181 3.819 11 C -0.123 4.123 12 C -0.109 4.109 13 H 0.060 0.940 14 C 0.134 3.866 15 N -0.609 5.609 16 C 0.513 3.487 17 O -0.583 6.583 18 C -0.128 4.128 19 C -0.019 4.019 20 C -0.027 4.027 21 C -0.215 4.215 22 C -0.227 4.227 23 C -0.048 4.048 24 O -0.197 6.197 25 C 0.117 3.883 26 C -0.125 4.125 27 C 0.156 3.844 28 H 0.025 0.975 29 H 0.244 0.756 30 H 0.004 0.996 31 H 0.015 0.985 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.106 0.894 37 H 0.124 0.876 38 H 0.104 0.896 39 H 0.073 0.927 40 H 0.162 0.838 41 H 0.167 0.833 42 H 0.232 0.768 43 H 0.087 0.913 44 H 0.113 0.887 45 H 0.076 0.924 46 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.759 -19.827 -4.522 25.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.606 5.606 2 C -0.265 4.265 3 Si 0.803 3.197 4 H -0.185 1.185 5 H -0.225 1.225 6 H -0.223 1.223 7 C -0.355 4.355 8 H 0.107 0.893 9 N -0.341 5.341 10 C 0.056 3.944 11 C -0.161 4.161 12 C -0.129 4.129 13 H 0.079 0.921 14 C 0.011 3.989 15 N -0.341 5.341 16 C 0.302 3.698 17 O -0.464 6.464 18 C -0.168 4.168 19 C -0.056 4.056 20 C -0.076 4.076 21 C -0.234 4.234 22 C -0.245 4.245 23 C -0.115 4.115 24 O -0.094 6.094 25 C -0.005 4.005 26 C -0.164 4.164 27 C 0.049 3.951 28 H 0.042 0.958 29 H 0.053 0.947 30 H 0.022 0.978 31 H 0.033 0.967 32 H 0.099 0.901 33 H 0.093 0.907 34 H 0.104 0.896 35 H 0.102 0.898 36 H 0.125 0.875 37 H 0.142 0.858 38 H 0.122 0.878 39 H 0.092 0.908 40 H 0.179 0.821 41 H 0.185 0.815 42 H 0.248 0.752 43 H 0.105 0.895 44 H 0.131 0.869 45 H 0.095 0.905 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 14.133 -19.789 -4.864 24.799 hybrid contribution -0.070 1.488 0.070 1.491 sum 14.062 -18.301 -4.794 23.573 Atomic orbital electron populations 1.70182 1.06417 1.24959 1.59020 1.25642 0.96523 1.01051 1.03327 0.85059 0.78489 0.79763 0.76381 1.18468 1.22458 1.22313 1.19464 0.91086 0.83356 1.41607 0.89293 1.44531 1.02194 1.00990 1.86401 1.21300 0.83867 0.91703 0.97508 1.22538 0.97047 0.95588 1.00955 1.22421 0.96485 0.95024 0.99015 0.92125 1.21473 0.82772 0.94523 1.00095 1.48400 1.09568 1.28824 1.47332 1.21095 0.91700 0.79665 0.77290 1.90671 1.48987 1.47867 1.58842 1.21711 0.93117 1.00162 1.01789 1.19753 0.87633 0.99192 0.99049 1.22533 0.97153 1.00196 0.87750 1.21929 0.93578 1.04365 1.03481 1.22188 1.01052 1.04414 0.96882 1.24757 0.83543 1.00306 1.02847 1.84031 1.26279 1.59657 1.39401 1.21896 0.88999 0.87373 1.02243 1.21821 0.97484 0.96570 1.00534 1.20902 0.93377 0.84930 0.95846 0.95770 0.94681 0.97825 0.96679 0.90143 0.90660 0.89607 0.89779 0.87540 0.85779 0.87816 0.90807 0.82072 0.81524 0.75184 0.89479 0.86868 0.90509 0.92897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.06 10.44 21.65 0.23 -57.83 16 2 C -0.07 -4.14 5.49 84.86 0.47 -3.67 16 3 Si 0.97 45.48 29.55 68.60 2.03 47.51 16 4 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 5 H -0.30 -14.04 7.11 99.48 0.71 -13.34 16 6 H -0.30 -13.92 7.11 99.48 0.71 -13.22 16 7 C -0.23 -12.25 9.88 84.03 0.83 -11.42 16 8 H 0.09 4.51 7.24 -2.91 -0.02 4.49 16 9 N -0.62 -30.76 3.34 -670.02 -2.24 -33.00 16 10 C 0.18 8.99 5.43 86.85 0.47 9.46 16 11 C -0.12 -4.47 6.51 31.52 0.21 -4.27 16 12 C -0.11 -3.73 2.84 -10.10 -0.03 -3.76 16 13 H 0.06 2.32 8.12 -2.39 -0.02 2.30 16 14 C 0.13 3.71 5.93 85.89 0.51 4.22 16 15 N -0.61 -15.02 3.00 -818.02 -2.45 -17.47 16 16 C 0.51 12.59 7.67 87.66 0.67 13.26 16 17 O -0.58 -18.45 15.34 -3.04 -0.05 -18.49 16 18 C -0.13 -2.17 4.01 29.85 0.12 -2.05 16 19 C -0.02 -0.34 5.04 29.85 0.15 -0.19 16 20 C -0.03 -0.50 6.58 24.83 0.16 -0.33 16 21 C -0.21 -3.47 10.81 22.19 0.24 -3.23 16 22 C -0.23 -3.23 10.91 22.19 0.24 -2.98 16 23 C -0.05 -0.68 12.09 66.97 0.81 0.13 16 24 O -0.20 -3.94 10.65 -2.49 -0.03 -3.97 16 25 C 0.12 2.46 6.22 86.68 0.54 3.00 16 26 C -0.12 -3.80 5.47 30.42 0.17 -3.64 16 27 C 0.16 5.91 2.57 45.49 0.12 6.03 16 28 H 0.02 0.93 7.94 -2.39 -0.02 0.91 16 29 H 0.24 14.48 8.31 -92.71 -0.77 13.70 16 30 H 0.00 0.19 7.77 -2.39 -0.02 0.18 16 31 H 0.01 0.85 7.21 -2.39 -0.02 0.83 16 32 H 0.08 2.61 8.12 -2.39 -0.02 2.59 16 33 H 0.07 2.52 8.14 -2.39 -0.02 2.51 16 34 H 0.09 2.51 6.99 -2.39 -0.02 2.49 16 35 H 0.08 2.11 8.08 -2.39 -0.02 2.09 16 36 H 0.11 1.68 7.55 -2.39 -0.02 1.66 16 37 H 0.12 1.48 7.99 -2.38 -0.02 1.46 16 38 H 0.10 1.81 8.10 -2.39 -0.02 1.79 16 39 H 0.07 1.57 8.10 -2.38 -0.02 1.55 16 40 H 0.16 2.01 8.06 -2.91 -0.02 1.99 16 41 H 0.17 1.56 8.06 -2.91 -0.02 1.54 16 42 H 0.23 1.46 8.06 -2.91 -0.02 1.44 16 43 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 44 H 0.11 1.68 5.83 -2.39 -0.01 1.67 16 45 H 0.08 2.34 7.65 -2.39 -0.02 2.32 16 46 H 0.05 1.76 8.12 -2.39 -0.02 1.75 16 Total: -1.00 -73.07 364.68 4.12 -68.95 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: 0.96 Total: 13.76 kcal Atomic # 6 Polarization: -5.13 SS G_CDS: 5.67 Total: 0.54 kcal Atomic # 7 Polarization: -103.84 SS G_CDS: -4.47 Total: -108.30 kcal Atomic # 8 Polarization: -22.39 SS G_CDS: -0.07 Total: -22.46 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.51 kcal Total: -73.07 4.12 -68.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036644969.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.167 kcal (2) G-P(sol) polarization free energy of solvation -73.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds