Wall clock time and date at job start Tue Mar 31 2020 12:10:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86798 * 120.00218 * 2 1 4 4 H 1.48495 * 109.47366 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47094 * 300.00138 * 3 2 1 6 6 H 1.48505 * 109.46926 * 59.99732 * 3 2 1 7 7 C 1.38817 * 120.00456 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00817 * 179.97438 * 7 2 1 9 9 N 1.36942 * 119.99349 * 359.97438 * 7 2 1 10 10 C 1.48155 * 126.40992 * 359.97438 * 9 7 2 11 11 C 1.55282 * 107.04726 * 184.92451 * 10 9 7 12 12 C 1.53739 * 101.83973 * 22.48220 * 11 10 9 13 13 H 1.09004 * 111.31006 * 78.95988 * 12 11 10 14 14 C 1.52709 * 114.67098 * 207.38205 * 12 11 10 15 15 N 1.47710 * 106.13236 * 169.70781 * 14 12 11 16 16 C 1.34777 * 119.68425 * 127.89051 * 15 14 12 17 17 O 1.21280 * 120.00150 * 359.72065 * 16 15 14 18 18 C 1.50707 * 119.99811 * 179.73208 * 16 15 14 19 19 C 1.53006 * 109.46642 * 179.97438 * 18 16 15 20 20 C 1.50700 * 109.46644 * 179.97438 * 19 18 16 21 21 C 1.34520 * 125.78639 * 90.00585 * 20 19 18 22 22 C 1.41381 * 106.83580 * 180.22245 * 21 20 19 23 23 C 1.34513 * 106.84363 * 359.57150 * 22 21 20 24 24 O 1.34302 * 125.79150 * 269.95626 * 20 19 18 25 25 C 1.46599 * 120.63264 * 307.61380 * 15 14 12 26 26 C 1.53962 * 110.57513 * 48.10154 * 25 15 14 27 27 C 1.45465 * 126.40145 * 180.02562 * 9 7 2 28 28 H 1.09003 * 109.26404 * 265.54335 * 27 9 7 29 29 H 0.96995 * 120.00339 * 359.97438 * 1 2 3 30 30 H 1.08999 * 109.92116 * 304.27699 * 10 9 7 31 31 H 1.09003 * 109.91619 * 65.57719 * 10 9 7 32 32 H 1.09005 * 110.95745 * 140.61477 * 11 10 9 33 33 H 1.09002 * 110.95904 * 264.34371 * 11 10 9 34 34 H 1.08998 * 110.22387 * 50.54710 * 14 12 11 35 35 H 1.08996 * 110.13709 * 288.82218 * 14 12 11 36 36 H 1.08991 * 109.47448 * 59.99944 * 18 16 15 37 37 H 1.09001 * 109.46967 * 299.99387 * 18 16 15 38 38 H 1.09002 * 109.47199 * 59.99435 * 19 18 16 39 39 H 1.09001 * 109.47148 * 299.99532 * 19 18 16 40 40 H 1.08002 * 126.57789 * 359.95308 * 21 20 19 41 41 H 1.08009 * 126.57222 * 179.73218 * 22 21 20 42 42 H 1.07998 * 125.78715 * 180.12081 * 23 22 21 43 43 H 1.09002 * 109.25870 * 168.38325 * 25 15 14 44 44 H 1.09004 * 109.25641 * 287.81931 * 25 15 14 45 45 H 1.09003 * 109.87911 * 68.40577 * 26 25 15 46 46 H 1.08997 * 109.87854 * 189.48363 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3463 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1467 -2.5534 0.0005 11 6 -0.4339 -4.0742 0.1275 12 6 0.8689 -4.5895 0.7604 13 1 0.8933 -4.3932 1.8324 14 6 1.2024 -6.0444 0.4378 15 7 2.5831 -6.2643 0.9142 16 6 2.8502 -7.3037 1.7296 17 8 1.9580 -8.0500 2.0729 18 6 4.2575 -7.5383 2.2151 19 6 4.2860 -8.7722 3.1194 20 6 5.6933 -9.0071 3.6043 21 6 6.2342 -8.4979 4.7258 22 6 7.5662 -8.9680 4.7880 23 6 7.7565 -9.7440 3.7059 24 8 6.6200 -9.7611 2.9906 25 6 3.6669 -5.3665 0.5037 26 6 3.2482 -3.8958 0.6829 27 6 1.9078 -3.7211 -0.0005 28 1 1.9785 -4.0826 -1.0264 29 1 -0.4850 0.8400 0.0004 30 1 -0.5796 -2.0217 0.8479 31 1 -0.5638 -2.1734 -0.9321 32 1 -1.2849 -4.2567 0.7838 33 1 -0.5957 -4.5235 -0.8523 34 1 1.1461 -6.2143 -0.6374 35 1 0.5160 -6.7112 0.9595 36 1 4.5978 -6.6685 2.7770 37 1 4.9147 -7.6986 1.3603 38 1 3.9454 -9.6421 2.5578 39 1 3.6289 -8.6114 3.9741 40 1 5.7462 -7.8504 5.4392 41 1 8.2908 -8.7484 5.5582 42 1 8.6701 -10.2612 3.4524 43 1 4.5489 -5.5659 1.1124 44 1 3.9058 -5.5471 -0.5444 45 1 3.1559 -3.6633 1.7438 46 1 3.9879 -3.2411 0.2220 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036644970.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:30 Heat of formation + Delta-G solvation = 5.538304 kcal Electronic energy + Delta-G solvation = -26773.682543 eV Core-core repulsion = 23051.577071 eV Total energy + Delta-G solvation = -3722.105472 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.77448 -40.29241 -38.36409 -35.41644 -34.31313 -33.04106 -32.65287 -31.57575 -30.00364 -28.95096 -27.96681 -25.24160 -24.59024 -23.01749 -22.37738 -21.96725 -20.60380 -20.09374 -19.74775 -18.81414 -17.77309 -16.97245 -16.29805 -16.24251 -15.88196 -15.61194 -15.04037 -14.64849 -14.43588 -14.09582 -13.91497 -13.52344 -13.15765 -13.05117 -12.99260 -12.87950 -12.73542 -12.46413 -12.30166 -12.13241 -11.66077 -11.50229 -11.42507 -11.29767 -10.86580 -10.82616 -10.73904 -10.17120 -10.14337 -10.09770 -9.91693 -9.69810 -9.65268 -9.47342 -8.67640 -8.65052 -8.52658 -6.86034 -5.74038 -3.07308 1.49227 2.38648 2.64553 2.73914 3.10172 3.37414 3.42576 3.45340 4.30110 4.46594 4.65445 4.72351 4.77613 4.82627 4.94581 5.00826 5.08139 5.22404 5.29640 5.34931 5.47730 5.52993 5.56512 5.59303 5.59993 5.71805 5.77368 5.78864 5.87563 5.93318 6.01716 6.13193 6.16556 6.21565 6.28272 6.33676 6.47162 6.59976 6.62281 6.81539 6.92216 7.04479 7.46216 7.53553 7.59818 7.79040 8.19435 8.21978 9.16930 9.80602 10.48659 11.38576 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.018280 B = 0.002791 C = 0.002506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.392530 B =10030.830215 C =11171.970992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.008 4.008 3 Si 0.909 3.091 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.225 4.225 8 H 0.079 0.921 9 N -0.595 5.595 10 C 0.177 3.823 11 C -0.136 4.136 12 C -0.124 4.124 13 H 0.079 0.921 14 C 0.126 3.874 15 N -0.606 5.606 16 C 0.513 3.487 17 O -0.550 6.550 18 C -0.138 4.138 19 C -0.024 4.024 20 C -0.007 4.007 21 C -0.211 4.211 22 C -0.213 4.213 23 C -0.047 4.047 24 O -0.176 6.176 25 C 0.109 3.891 26 C -0.130 4.130 27 C 0.167 3.833 28 H 0.019 0.981 29 H 0.252 0.748 30 H 0.054 0.946 31 H 0.038 0.962 32 H 0.061 0.939 33 H 0.058 0.942 34 H 0.068 0.932 35 H 0.090 0.910 36 H 0.099 0.901 37 H 0.096 0.904 38 H 0.089 0.911 39 H 0.102 0.898 40 H 0.148 0.852 41 H 0.147 0.853 42 H 0.201 0.799 43 H 0.080 0.920 44 H 0.066 0.934 45 H 0.068 0.932 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.736 -17.556 5.209 21.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.205 4.205 3 Si 0.740 3.260 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.354 4.354 8 H 0.097 0.903 9 N -0.319 5.319 10 C 0.052 3.948 11 C -0.175 4.175 12 C -0.145 4.145 13 H 0.098 0.902 14 C 0.004 3.996 15 N -0.339 5.339 16 C 0.301 3.699 17 O -0.428 6.428 18 C -0.178 4.178 19 C -0.062 4.062 20 C -0.058 4.058 21 C -0.230 4.230 22 C -0.232 4.232 23 C -0.114 4.114 24 O -0.072 6.072 25 C -0.014 4.014 26 C -0.169 4.169 27 C 0.059 3.941 28 H 0.036 0.964 29 H 0.062 0.938 30 H 0.073 0.927 31 H 0.056 0.944 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.087 0.913 35 H 0.108 0.892 36 H 0.117 0.883 37 H 0.114 0.886 38 H 0.107 0.893 39 H 0.120 0.880 40 H 0.166 0.834 41 H 0.165 0.835 42 H 0.218 0.782 43 H 0.098 0.902 44 H 0.084 0.916 45 H 0.086 0.914 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 11.169 -17.825 5.086 21.642 hybrid contribution 0.740 1.217 0.194 1.437 sum 11.910 -16.608 5.280 21.108 Atomic orbital electron populations 1.69945 1.04905 1.24948 1.57043 1.24798 0.95679 0.97658 1.02341 0.86082 0.78704 0.83952 0.77243 1.20521 1.21792 1.21805 1.19036 0.90366 0.82297 1.43663 0.90326 1.44217 1.01669 0.99466 1.86575 1.21533 0.83920 0.88334 1.00970 1.22717 0.95834 0.99645 0.99330 1.22727 0.97824 0.93280 1.00638 0.90217 1.21713 0.81683 0.97083 0.99095 1.48329 1.09991 1.27577 1.47966 1.20520 0.90623 0.80478 0.78244 1.90679 1.47913 1.46471 1.57743 1.21716 0.95244 0.99687 1.01126 1.19862 0.86962 0.98492 1.00843 1.22504 0.92224 0.96757 0.94271 1.21656 0.95480 1.05964 0.99887 1.21855 0.97740 1.02762 1.00886 1.24018 0.89615 1.04201 0.93587 1.84027 1.20187 1.56472 1.46546 1.21834 0.88802 0.90469 1.00284 1.21878 0.99464 0.93473 1.02054 1.20614 0.91129 0.87234 0.95160 0.96377 0.93788 0.92730 0.94353 0.92056 0.92344 0.91331 0.89201 0.88258 0.88556 0.89266 0.87963 0.83387 0.83522 0.78222 0.90164 0.91570 0.91359 0.90480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.72 10.44 55.49 0.58 -26.14 16 2 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 3 Si 0.91 21.70 29.55 -169.99 -5.02 16.68 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 7 C -0.23 -6.03 9.88 -15.05 -0.15 -6.18 16 8 H 0.08 2.01 7.21 -52.49 -0.38 1.63 16 9 N -0.59 -14.57 3.35 -163.16 -0.55 -15.11 16 10 C 0.18 4.20 5.45 -1.92 -0.01 4.19 16 11 C -0.14 -2.50 6.54 -25.14 -0.16 -2.66 16 12 C -0.12 -2.17 2.88 -89.15 -0.26 -2.42 16 13 H 0.08 1.51 8.13 -51.93 -0.42 1.09 16 14 C 0.13 1.88 5.98 -3.53 -0.02 1.86 16 15 N -0.61 -8.31 2.99 -172.21 -0.52 -8.82 16 16 C 0.51 6.90 7.67 -10.98 -0.08 6.82 16 17 O -0.55 -9.05 15.34 5.56 0.09 -8.97 16 18 C -0.14 -1.37 4.01 -27.88 -0.11 -1.48 16 19 C -0.02 -0.24 5.04 -27.88 -0.14 -0.38 16 20 C -0.01 -0.08 6.57 -35.62 -0.23 -0.31 16 21 C -0.21 -2.04 10.81 -39.70 -0.43 -2.47 16 22 C -0.21 -1.84 10.91 -39.70 -0.43 -2.27 16 23 C -0.05 -0.38 12.09 29.42 0.36 -0.03 16 24 O -0.18 -1.84 10.65 5.71 0.06 -1.78 16 25 C 0.11 1.35 6.21 -3.49 -0.02 1.33 16 26 C -0.13 -2.09 5.48 -27.00 -0.15 -2.23 16 27 C 0.17 3.23 2.57 -68.03 -0.17 3.06 16 28 H 0.02 0.37 7.89 -51.93 -0.41 -0.04 16 29 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 30 H 0.05 1.45 7.21 -51.93 -0.37 1.07 16 31 H 0.04 1.00 7.77 -51.93 -0.40 0.60 16 32 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.06 0.99 8.11 -51.93 -0.42 0.57 16 34 H 0.07 0.97 8.06 -51.93 -0.42 0.55 16 35 H 0.09 1.38 6.99 -51.93 -0.36 1.02 16 36 H 0.10 0.89 7.55 -51.93 -0.39 0.50 16 37 H 0.10 0.84 7.99 -51.93 -0.41 0.43 16 38 H 0.09 0.92 8.10 -51.93 -0.42 0.50 16 39 H 0.10 1.01 8.10 -51.93 -0.42 0.59 16 40 H 0.15 1.24 8.06 -52.49 -0.42 0.81 16 41 H 0.15 0.95 8.06 -52.48 -0.42 0.53 16 42 H 0.20 0.87 8.06 -52.49 -0.42 0.45 16 43 H 0.08 0.78 5.84 -51.93 -0.30 0.48 16 44 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.07 1.16 8.12 -51.93 -0.42 0.74 16 46 H 0.08 1.26 7.62 -51.93 -0.40 0.86 16 LS Contribution 364.68 15.07 5.50 5.50 Total: -1.00 -32.13 364.68 -9.19 -41.32 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -7.21 Total: 0.83 kcal Atomic # 6 Polarization: -1.38 SS G_CDS: -2.12 Total: -3.50 kcal Atomic # 7 Polarization: -49.59 SS G_CDS: -0.48 Total: -50.07 kcal Atomic # 8 Polarization: -10.90 SS G_CDS: 0.15 Total: -10.75 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.13 -9.19 -41.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036644970.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.857 kcal (2) G-P(sol) polarization free energy of solvation -32.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds