Wall clock time and date at job start Tue Mar 31 2020 12:10:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86798 * 120.00218 * 2 1 4 4 H 1.48495 * 109.47366 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47094 * 300.00138 * 3 2 1 6 6 H 1.48505 * 109.46926 * 59.99732 * 3 2 1 7 7 C 1.38817 * 120.00456 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00817 * 179.97438 * 7 2 1 9 9 N 1.36942 * 119.99349 * 359.97438 * 7 2 1 10 10 C 1.48155 * 126.40992 * 359.97438 * 9 7 2 11 11 C 1.55282 * 107.04726 * 184.92451 * 10 9 7 12 12 C 1.53739 * 101.83973 * 22.48220 * 11 10 9 13 13 H 1.09004 * 111.31006 * 78.95988 * 12 11 10 14 14 C 1.52709 * 114.67098 * 207.38205 * 12 11 10 15 15 N 1.47710 * 106.13236 * 169.70781 * 14 12 11 16 16 C 1.34777 * 119.68425 * 127.89051 * 15 14 12 17 17 O 1.21280 * 120.00150 * 359.72065 * 16 15 14 18 18 C 1.50707 * 119.99811 * 179.73208 * 16 15 14 19 19 C 1.53006 * 109.46642 * 179.97438 * 18 16 15 20 20 C 1.50700 * 109.46644 * 179.97438 * 19 18 16 21 21 C 1.34520 * 125.78639 * 90.00585 * 20 19 18 22 22 C 1.41381 * 106.83580 * 180.22245 * 21 20 19 23 23 C 1.34513 * 106.84363 * 359.57150 * 22 21 20 24 24 O 1.34302 * 125.79150 * 269.95626 * 20 19 18 25 25 C 1.46599 * 120.63264 * 307.61380 * 15 14 12 26 26 C 1.53962 * 110.57513 * 48.10154 * 25 15 14 27 27 C 1.45465 * 126.40145 * 180.02562 * 9 7 2 28 28 H 1.09003 * 109.26404 * 265.54335 * 27 9 7 29 29 H 0.96995 * 120.00339 * 359.97438 * 1 2 3 30 30 H 1.08999 * 109.92116 * 304.27699 * 10 9 7 31 31 H 1.09003 * 109.91619 * 65.57719 * 10 9 7 32 32 H 1.09005 * 110.95745 * 140.61477 * 11 10 9 33 33 H 1.09002 * 110.95904 * 264.34371 * 11 10 9 34 34 H 1.08998 * 110.22387 * 50.54710 * 14 12 11 35 35 H 1.08996 * 110.13709 * 288.82218 * 14 12 11 36 36 H 1.08991 * 109.47448 * 59.99944 * 18 16 15 37 37 H 1.09001 * 109.46967 * 299.99387 * 18 16 15 38 38 H 1.09002 * 109.47199 * 59.99435 * 19 18 16 39 39 H 1.09001 * 109.47148 * 299.99532 * 19 18 16 40 40 H 1.08002 * 126.57789 * 359.95308 * 21 20 19 41 41 H 1.08009 * 126.57222 * 179.73218 * 22 21 20 42 42 H 1.07998 * 125.78715 * 180.12081 * 23 22 21 43 43 H 1.09002 * 109.25870 * 168.38325 * 25 15 14 44 44 H 1.09004 * 109.25641 * 287.81931 * 25 15 14 45 45 H 1.09003 * 109.87911 * 68.40577 * 26 25 15 46 46 H 1.08997 * 109.87854 * 189.48363 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3463 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1467 -2.5534 0.0005 11 6 -0.4339 -4.0742 0.1275 12 6 0.8689 -4.5895 0.7604 13 1 0.8933 -4.3932 1.8324 14 6 1.2024 -6.0444 0.4378 15 7 2.5831 -6.2643 0.9142 16 6 2.8502 -7.3037 1.7296 17 8 1.9580 -8.0500 2.0729 18 6 4.2575 -7.5383 2.2151 19 6 4.2860 -8.7722 3.1194 20 6 5.6933 -9.0071 3.6043 21 6 6.2342 -8.4979 4.7258 22 6 7.5662 -8.9680 4.7880 23 6 7.7565 -9.7440 3.7059 24 8 6.6200 -9.7611 2.9906 25 6 3.6669 -5.3665 0.5037 26 6 3.2482 -3.8958 0.6829 27 6 1.9078 -3.7211 -0.0005 28 1 1.9785 -4.0826 -1.0264 29 1 -0.4850 0.8400 0.0004 30 1 -0.5796 -2.0217 0.8479 31 1 -0.5638 -2.1734 -0.9321 32 1 -1.2849 -4.2567 0.7838 33 1 -0.5957 -4.5235 -0.8523 34 1 1.1461 -6.2143 -0.6374 35 1 0.5160 -6.7112 0.9595 36 1 4.5978 -6.6685 2.7770 37 1 4.9147 -7.6986 1.3603 38 1 3.9454 -9.6421 2.5578 39 1 3.6289 -8.6114 3.9741 40 1 5.7462 -7.8504 5.4392 41 1 8.2908 -8.7484 5.5582 42 1 8.6701 -10.2612 3.4524 43 1 4.5489 -5.5659 1.1124 44 1 3.9058 -5.5471 -0.5444 45 1 3.1559 -3.6633 1.7438 46 1 3.9879 -3.2411 0.2220 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036644970.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:29 Heat of formation + Delta-G solvation = -12.938824 kcal Electronic energy + Delta-G solvation = -26774.483771 eV Core-core repulsion = 23051.577071 eV Total energy + Delta-G solvation = -3722.906701 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -43.44091 -41.48407 -39.76346 -36.81129 -35.15300 -34.47524 -33.66756 -32.99203 -31.48643 -30.17367 -29.20278 -26.72566 -25.92287 -24.23105 -23.72135 -22.62147 -21.87797 -21.35066 -21.08247 -19.95233 -18.77415 -18.27625 -17.55459 -17.13024 -16.94680 -16.80210 -16.56462 -15.96738 -15.68750 -15.44878 -15.18403 -14.82064 -14.43621 -14.23368 -14.03536 -13.78689 -13.69326 -13.52833 -13.35269 -13.26214 -13.11151 -12.96477 -12.93813 -12.71430 -12.45062 -12.09939 -12.02556 -11.95511 -11.75794 -11.60459 -11.50790 -11.00581 -10.83298 -10.76294 -10.70972 -9.67413 -9.33896 -8.86533 -7.82715 -5.17076 0.82582 1.46856 1.47280 1.57300 1.61557 1.72986 1.95604 2.21239 2.51234 3.36464 3.40020 3.54767 3.85504 3.85835 3.92236 3.99591 4.07021 4.10603 4.19811 4.22986 4.24907 4.35679 4.41817 4.52600 4.56955 4.67373 4.74021 4.75790 4.84699 4.86710 4.93537 4.97658 5.01618 5.06885 5.09715 5.11403 5.24320 5.29310 5.47670 5.55882 5.57284 5.65779 5.66971 5.77274 6.21622 6.26235 6.41037 7.10183 7.14687 7.80680 8.49566 9.29582 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.018280 B = 0.002791 C = 0.002506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.392530 B =10030.830215 C =11171.970992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.073 4.073 3 Si 0.974 3.026 4 H -0.261 1.261 5 H -0.296 1.296 6 H -0.297 1.297 7 C -0.226 4.226 8 H 0.090 0.910 9 N -0.616 5.616 10 C 0.181 3.819 11 C -0.123 4.123 12 C -0.109 4.109 13 H 0.062 0.938 14 C 0.134 3.866 15 N -0.609 5.609 16 C 0.513 3.487 17 O -0.583 6.583 18 C -0.128 4.128 19 C -0.018 4.018 20 C -0.024 4.024 21 C -0.220 4.220 22 C -0.229 4.229 23 C -0.044 4.044 24 O -0.192 6.192 25 C 0.117 3.883 26 C -0.124 4.124 27 C 0.156 3.844 28 H 0.022 0.978 29 H 0.244 0.756 30 H 0.016 0.984 31 H 0.003 0.997 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.115 0.885 37 H 0.116 0.884 38 H 0.080 0.920 39 H 0.097 0.903 40 H 0.155 0.845 41 H 0.165 0.835 42 H 0.235 0.765 43 H 0.114 0.886 44 H 0.084 0.916 45 H 0.055 0.945 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.637 -19.235 5.290 24.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.606 5.606 2 C -0.265 4.265 3 Si 0.803 3.197 4 H -0.185 1.185 5 H -0.224 1.224 6 H -0.224 1.224 7 C -0.355 4.355 8 H 0.107 0.893 9 N -0.340 5.340 10 C 0.056 3.944 11 C -0.161 4.161 12 C -0.129 4.129 13 H 0.080 0.920 14 C 0.012 3.988 15 N -0.341 5.341 16 C 0.303 3.697 17 O -0.463 6.463 18 C -0.168 4.168 19 C -0.056 4.056 20 C -0.074 4.074 21 C -0.239 4.239 22 C -0.248 4.248 23 C -0.111 4.111 24 O -0.089 6.089 25 C -0.005 4.005 26 C -0.163 4.163 27 C 0.049 3.951 28 H 0.039 0.961 29 H 0.053 0.947 30 H 0.034 0.966 31 H 0.022 0.978 32 H 0.094 0.906 33 H 0.096 0.904 34 H 0.101 0.899 35 H 0.105 0.895 36 H 0.133 0.867 37 H 0.134 0.866 38 H 0.099 0.901 39 H 0.115 0.885 40 H 0.173 0.827 41 H 0.183 0.817 42 H 0.251 0.749 43 H 0.132 0.868 44 H 0.102 0.898 45 H 0.073 0.927 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 14.117 -19.538 5.168 24.652 hybrid contribution -0.138 1.689 0.188 1.705 sum 13.979 -17.849 5.355 23.295 Atomic orbital electron populations 1.70173 1.06424 1.24979 1.58990 1.25639 0.96516 1.01046 1.03308 0.85060 0.78497 0.79761 0.76377 1.18456 1.22363 1.22421 1.19465 0.91092 0.83319 1.41643 0.89265 1.44513 1.02189 1.00966 1.86373 1.21296 0.83885 0.91653 0.97518 1.22588 0.97069 0.95517 1.00970 1.22555 0.96398 0.94868 0.99126 0.91961 1.21542 0.82754 0.94591 0.99917 1.48390 1.09675 1.28002 1.48065 1.21093 0.91683 0.79667 0.77284 1.90670 1.49317 1.47620 1.58731 1.21711 0.92944 1.00232 1.01901 1.19744 0.87059 0.98228 1.00552 1.22486 0.92343 0.97698 0.94845 1.21926 0.96201 1.05924 0.99814 1.22180 0.97752 1.03073 1.01770 1.24763 0.89811 1.03517 0.92966 1.84019 1.20909 1.56734 1.47232 1.21894 0.89126 0.87312 1.02201 1.21810 0.97391 0.96461 1.00643 1.20873 0.93446 0.84918 0.95845 0.96086 0.94669 0.96609 0.97837 0.90577 0.90387 0.89945 0.89513 0.86716 0.86586 0.90102 0.88463 0.82683 0.81727 0.74862 0.86765 0.89775 0.92651 0.90556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -57.88 10.44 21.65 0.23 -57.65 16 2 C -0.07 -4.11 5.49 84.86 0.47 -3.64 16 3 Si 0.97 45.32 29.55 68.60 2.03 47.34 16 4 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 5 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 6 H -0.30 -13.96 7.11 99.48 0.71 -13.26 16 7 C -0.23 -12.21 9.88 84.03 0.83 -11.38 16 8 H 0.09 4.50 7.21 -2.92 -0.02 4.48 16 9 N -0.62 -30.63 3.35 -670.11 -2.25 -32.88 16 10 C 0.18 8.98 5.45 86.84 0.47 9.45 16 11 C -0.12 -4.47 6.54 31.63 0.21 -4.27 16 12 C -0.11 -3.71 2.88 -9.84 -0.03 -3.73 16 13 H 0.06 2.34 8.13 -2.39 -0.02 2.32 16 14 C 0.13 3.73 5.98 86.05 0.51 4.25 16 15 N -0.61 -15.02 2.99 -817.13 -2.45 -17.47 16 16 C 0.51 12.56 7.67 87.66 0.67 13.23 16 17 O -0.58 -18.39 15.34 -3.03 -0.05 -18.43 16 18 C -0.13 -2.16 4.01 29.85 0.12 -2.04 16 19 C -0.02 -0.33 5.04 29.85 0.15 -0.18 16 20 C -0.02 -0.45 6.57 24.83 0.16 -0.28 16 21 C -0.22 -3.82 10.81 22.19 0.24 -3.58 16 22 C -0.23 -3.38 10.91 22.19 0.24 -3.14 16 23 C -0.04 -0.59 12.09 66.97 0.81 0.21 16 24 O -0.19 -3.61 10.65 -2.47 -0.03 -3.63 16 25 C 0.12 2.46 6.21 86.69 0.54 3.00 16 26 C -0.12 -3.74 5.48 30.42 0.17 -3.58 16 27 C 0.16 5.89 2.57 45.48 0.12 6.01 16 28 H 0.02 0.82 7.89 -2.39 -0.02 0.80 16 29 H 0.24 14.44 8.31 -92.71 -0.77 13.67 16 30 H 0.02 0.88 7.21 -2.39 -0.02 0.86 16 31 H 0.00 0.19 7.77 -2.39 -0.02 0.17 16 32 H 0.08 2.54 8.14 -2.38 -0.02 2.52 16 33 H 0.08 2.55 8.11 -2.39 -0.02 2.53 16 34 H 0.08 2.10 8.06 -2.39 -0.02 2.08 16 35 H 0.09 2.52 6.99 -2.39 -0.02 2.51 16 36 H 0.11 1.63 7.55 -2.39 -0.02 1.61 16 37 H 0.12 1.55 7.99 -2.39 -0.02 1.53 16 38 H 0.08 1.59 8.10 -2.39 -0.02 1.57 16 39 H 0.10 1.83 8.10 -2.39 -0.02 1.81 16 40 H 0.16 2.33 8.06 -2.91 -0.02 2.31 16 41 H 0.17 1.70 8.06 -2.91 -0.02 1.67 16 42 H 0.24 1.20 8.06 -2.91 -0.02 1.17 16 43 H 0.11 1.68 5.84 -2.39 -0.01 1.67 16 44 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 45 H 0.05 1.81 8.12 -2.39 -0.02 1.79 16 46 H 0.08 2.32 7.62 -2.39 -0.02 2.30 16 Total: -1.00 -72.50 364.68 4.13 -68.37 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: 0.96 Total: 14.02 kcal Atomic # 6 Polarization: -5.34 SS G_CDS: 5.68 Total: 0.34 kcal Atomic # 7 Polarization: -103.54 SS G_CDS: -4.46 Total: -108.00 kcal Atomic # 8 Polarization: -21.99 SS G_CDS: -0.07 Total: -22.07 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.34 kcal Total: -72.50 4.13 -68.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036644970.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.430 kcal (2) G-P(sol) polarization free energy of solvation -72.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds