Wall clock time and date at job start Tue Mar 31 2020 12:25:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86800 * 119.99995 * 2 1 4 4 H 1.48498 * 109.47361 * 240.00401 * 3 2 1 5 5 H 1.48500 * 109.47169 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47103 * 120.00044 * 3 2 1 7 7 C 1.38810 * 120.00179 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00344 * 180.02562 * 7 2 1 9 9 N 1.36932 * 120.00247 * 359.97438 * 7 2 1 10 10 C 1.47437 * 126.05479 * 359.97438 * 9 7 2 11 11 C 1.54491 * 107.15497 * 181.61309 * 10 9 7 12 12 C 1.56020 * 102.62057 * 22.82860 * 11 10 9 13 13 H 1.09007 * 112.89537 * 202.90465 * 12 11 10 14 14 C 1.52734 * 106.47359 * 78.39597 * 12 11 10 15 15 N 1.46529 * 110.46842 * 203.10152 * 14 12 11 16 16 C 1.34780 * 121.00591 * 235.55861 * 15 14 12 17 17 O 1.21273 * 120.00836 * 359.72366 * 16 15 14 18 18 C 1.50710 * 119.99368 * 179.72204 * 16 15 14 19 19 C 1.52998 * 109.47060 * 179.97438 * 18 16 15 20 20 C 1.50696 * 109.47064 * 179.97438 * 19 18 16 21 21 C 1.41385 * 126.57985 * 90.00242 * 20 19 18 22 22 C 1.34507 * 106.84104 * 179.73601 * 21 20 19 23 23 O 1.34300 * 108.42410 * 359.97438 * 22 21 20 24 24 C 1.34307 * 109.47608 * 359.97438 * 23 22 21 25 25 C 1.47135 * 117.97371 * 55.29026 * 15 14 12 26 26 C 1.53051 * 107.68744 * 302.82670 * 25 15 14 27 27 C 1.46469 * 126.06130 * 180.02562 * 9 7 2 28 28 H 1.09008 * 108.33966 * 269.13094 * 27 9 7 29 29 H 0.96999 * 120.00284 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.90158 * 300.99943 * 10 9 7 31 31 H 1.08998 * 109.90014 * 62.05029 * 10 9 7 32 32 H 1.08995 * 110.78417 * 141.11240 * 11 10 9 33 33 H 1.09006 * 110.78195 * 264.35718 * 11 10 9 34 34 H 1.08998 * 109.25296 * 82.77075 * 14 12 11 35 35 H 1.08997 * 109.17676 * 323.38293 * 14 12 11 36 36 H 1.08998 * 109.47150 * 59.99692 * 18 16 15 37 37 H 1.09000 * 109.46941 * 300.00185 * 18 16 15 38 38 H 1.09002 * 109.46661 * 59.99971 * 19 18 16 39 39 H 1.09003 * 109.47111 * 300.00622 * 19 18 16 40 40 H 1.08003 * 126.57418 * 359.76478 * 21 20 19 41 41 H 1.08001 * 125.78847 * 180.02562 * 22 21 20 42 42 H 1.07996 * 125.79095 * 179.97438 * 24 23 22 43 43 H 1.08996 * 109.82142 * 62.37305 * 25 15 14 44 44 H 1.09001 * 109.81842 * 183.28194 * 25 15 14 45 45 H 1.08995 * 109.15197 * 174.82336 * 26 25 15 46 46 H 1.09004 * 109.14942 * 294.04339 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 -0.1405 -2.5436 0.0005 11 6 -0.4378 -4.0591 0.0416 12 6 0.8723 -4.6471 0.6516 13 1 1.0216 -5.6979 0.4027 14 6 0.8003 -4.3956 2.1564 15 7 2.1442 -4.3940 2.7405 16 6 2.4588 -5.2166 3.7607 17 8 1.6226 -5.9697 4.2125 18 6 3.8500 -5.2003 4.3401 19 6 3.9408 -6.2199 5.4773 20 6 5.3320 -6.2041 6.0562 21 6 5.7922 -5.3965 7.1215 22 6 7.0866 -5.7070 7.3149 23 8 7.4327 -6.6550 6.4288 24 6 6.3723 -6.9610 5.6634 25 6 3.1412 -3.4713 2.1753 26 6 3.2674 -3.7810 0.6817 27 6 1.9201 -3.7267 -0.0005 28 1 2.0449 -4.0465 -1.0351 29 1 -0.4850 0.8400 0.0004 30 1 -0.5645 -2.0583 0.8796 31 1 -0.5608 -2.1047 -0.9043 32 1 -1.2920 -4.2683 0.6855 33 1 -0.6084 -4.4472 -0.9626 34 1 0.2044 -5.1795 2.6237 35 1 0.3274 -3.4301 2.3358 36 1 4.0712 -4.2053 4.7261 37 1 4.5701 -5.4570 3.5631 38 1 3.7193 -7.2150 5.0915 39 1 3.2205 -5.9628 6.2540 40 1 5.2150 -4.6699 7.6741 41 1 7.7370 -5.2690 8.0576 42 1 6.3578 -7.6899 4.8666 43 1 2.8115 -2.4415 2.3125 44 1 4.1030 -3.6206 2.6660 45 1 3.9320 -3.0508 0.2200 46 1 3.6902 -4.7780 0.5577 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036685899.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:35 Heat of formation + Delta-G solvation = 3.444213 kcal Electronic energy + Delta-G solvation = -27281.173229 eV Core-core repulsion = 23558.976950 eV Total energy + Delta-G solvation = -3722.196279 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.71071 -40.11117 -38.31266 -35.04933 -34.87832 -32.84569 -31.64470 -31.54101 -29.63577 -29.05579 -27.61125 -25.64299 -24.60851 -23.30147 -22.51744 -21.76578 -20.41004 -20.05232 -19.40943 -18.13700 -17.68251 -16.72134 -16.33609 -16.12602 -15.60892 -15.52650 -15.09338 -14.82041 -14.41863 -14.03714 -13.86742 -13.66740 -13.03243 -12.97066 -12.92044 -12.58785 -12.50539 -12.21917 -12.09971 -11.89228 -11.52746 -11.40543 -11.10710 -11.04047 -10.98427 -10.78810 -10.66699 -10.20439 -10.04153 -9.92472 -9.84775 -9.64944 -9.62122 -9.41722 -8.70773 -8.62505 -8.16068 -6.84448 -5.74408 -3.07282 1.58835 2.40688 2.89420 2.97066 3.36485 3.37993 3.41400 3.43194 4.45748 4.55634 4.63354 4.81190 5.01441 5.06097 5.14804 5.17619 5.28397 5.34802 5.51777 5.52265 5.54859 5.60033 5.61833 5.63510 5.78092 5.89640 5.90416 6.03891 6.04770 6.11134 6.13824 6.27455 6.31193 6.34635 6.36645 6.44162 6.54702 6.71013 6.77108 6.89339 6.93895 6.96057 7.53439 7.59614 7.78985 7.81687 8.22241 8.45993 9.17809 9.80166 10.48062 11.37600 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.015439 B = 0.003314 C = 0.002921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1813.112366 B = 8447.532517 C = 9582.990162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.006 4.006 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.226 4.226 8 H 0.078 0.922 9 N -0.593 5.593 10 C 0.176 3.824 11 C -0.142 4.142 12 C -0.116 4.116 13 H 0.076 0.924 14 C 0.126 3.874 15 N -0.600 5.600 16 C 0.512 3.488 17 O -0.557 6.557 18 C -0.132 4.132 19 C -0.034 4.034 20 C -0.175 4.175 21 C -0.208 4.208 22 C -0.046 4.046 23 O -0.180 6.180 24 C -0.042 4.042 25 C 0.113 3.887 26 C -0.128 4.128 27 C 0.171 3.829 28 H 0.016 0.984 29 H 0.252 0.748 30 H 0.046 0.954 31 H 0.042 0.958 32 H 0.061 0.939 33 H 0.058 0.942 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.148 0.852 41 H 0.200 0.800 42 H 0.201 0.799 43 H 0.090 0.910 44 H 0.072 0.928 45 H 0.075 0.925 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.447 -11.721 9.544 18.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.203 4.203 3 Si 0.738 3.262 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.354 4.354 8 H 0.096 0.904 9 N -0.319 5.319 10 C 0.052 3.948 11 C -0.181 4.181 12 C -0.137 4.137 13 H 0.094 0.906 14 C 0.004 3.996 15 N -0.332 5.332 16 C 0.300 3.700 17 O -0.437 6.437 18 C -0.172 4.172 19 C -0.072 4.072 20 C -0.176 4.176 21 C -0.227 4.227 22 C -0.113 4.113 23 O -0.075 6.075 24 C -0.110 4.110 25 C -0.010 4.010 26 C -0.168 4.168 27 C 0.063 3.937 28 H 0.034 0.966 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.111 0.889 37 H 0.109 0.891 38 H 0.096 0.904 39 H 0.098 0.902 40 H 0.165 0.835 41 H 0.217 0.783 42 H 0.218 0.782 43 H 0.108 0.892 44 H 0.091 0.909 45 H 0.094 0.906 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 10.218 -11.973 9.747 18.514 hybrid contribution 0.289 1.231 -0.159 1.274 sum 10.507 -10.742 9.588 17.825 Atomic orbital electron populations 1.69939 1.04865 1.25125 1.56773 1.24769 0.95624 0.97525 1.02341 0.86275 0.78507 0.83572 0.77841 1.21240 1.21690 1.21228 1.18902 0.90327 0.82203 1.43979 0.90412 1.44309 1.01488 0.99351 1.86776 1.21240 0.84311 0.88284 1.00985 1.23133 0.95917 0.99588 0.99492 1.22652 0.97814 0.98374 0.94817 0.90591 1.21415 0.82919 1.02813 0.92470 1.48100 1.13389 1.38343 1.33319 1.20580 0.90034 0.79679 0.79708 1.90648 1.51160 1.40709 1.61160 1.21648 0.94858 1.01810 0.98901 1.19699 0.90976 0.99654 0.96848 1.20541 0.97337 1.00088 0.99653 1.21809 0.95649 1.04076 1.01166 1.24006 0.96929 0.93905 0.96457 1.84061 1.37566 1.47014 1.38901 1.23906 0.84727 1.03527 0.98835 1.21795 0.90733 0.94717 0.93747 1.21586 0.99194 1.00696 0.95282 1.20226 0.90786 0.87100 0.95605 0.96627 0.93723 0.93548 0.93956 0.92036 0.92369 0.90366 0.90478 0.88943 0.89071 0.90405 0.90226 0.83470 0.78284 0.78226 0.89209 0.90933 0.90626 0.92790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.03 10.38 55.49 0.58 -25.45 16 2 C -0.01 -0.16 5.49 -17.43 -0.10 -0.26 16 3 Si 0.91 21.22 29.55 -169.99 -5.02 16.20 16 4 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.23 -5.77 9.02 -15.06 -0.14 -5.90 16 8 H 0.08 1.89 6.69 -52.49 -0.35 1.54 16 9 N -0.59 -13.89 3.13 -164.53 -0.51 -14.40 16 10 C 0.18 4.08 4.64 -2.75 -0.01 4.07 16 11 C -0.14 -2.60 6.28 -24.33 -0.15 -2.75 16 12 C -0.12 -2.03 3.84 -88.64 -0.34 -2.37 16 13 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 14 C 0.13 2.25 5.44 -4.16 -0.02 2.23 16 15 N -0.60 -9.85 2.94 -173.28 -0.51 -10.36 16 16 C 0.51 8.02 7.71 -10.98 -0.08 7.93 16 17 O -0.56 -10.37 15.41 5.56 0.09 -10.28 16 18 C -0.13 -1.55 4.04 -27.88 -0.11 -1.66 16 19 C -0.03 -0.38 5.02 -27.89 -0.14 -0.52 16 20 C -0.17 -1.81 5.42 -104.74 -0.57 -2.38 16 21 C -0.21 -2.01 10.87 -39.70 -0.43 -2.44 16 22 C -0.05 -0.39 12.09 29.41 0.36 -0.03 16 23 O -0.18 -1.79 10.65 5.71 0.06 -1.73 16 24 C -0.04 -0.40 12.01 29.42 0.35 -0.04 16 25 C 0.11 1.77 6.27 -3.67 -0.02 1.74 16 26 C -0.13 -2.10 5.19 -27.65 -0.14 -2.25 16 27 C 0.17 3.29 2.84 -68.39 -0.19 3.09 16 28 H 0.02 0.33 8.14 -51.92 -0.42 -0.10 16 29 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 30 H 0.05 1.19 6.99 -51.93 -0.36 0.83 16 31 H 0.04 1.10 7.56 -51.93 -0.39 0.71 16 32 H 0.06 1.03 7.97 -51.93 -0.41 0.62 16 33 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.08 1.40 7.00 -51.93 -0.36 1.04 16 35 H 0.08 1.56 6.79 -51.93 -0.35 1.21 16 36 H 0.09 1.03 7.90 -51.93 -0.41 0.62 16 37 H 0.09 0.94 7.78 -51.93 -0.40 0.54 16 38 H 0.08 0.88 8.10 -51.93 -0.42 0.46 16 39 H 0.08 0.97 8.10 -51.93 -0.42 0.55 16 40 H 0.15 1.24 8.06 -52.48 -0.42 0.82 16 41 H 0.20 0.97 8.06 -52.49 -0.42 0.55 16 42 H 0.20 1.30 8.06 -52.49 -0.42 0.87 16 43 H 0.09 1.68 7.48 -51.93 -0.39 1.29 16 44 H 0.07 0.91 5.99 -51.93 -0.31 0.60 16 45 H 0.08 1.27 7.01 -51.93 -0.36 0.91 16 46 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 LS Contribution 359.94 15.07 5.42 5.42 Total: -1.00 -30.91 359.94 -8.70 -39.61 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -7.05 Total: 2.53 kcal Atomic # 6 Polarization: 0.21 SS G_CDS: -1.75 Total: -1.54 kcal Atomic # 7 Polarization: -49.76 SS G_CDS: -0.45 Total: -50.21 kcal Atomic # 8 Polarization: -12.15 SS G_CDS: 0.15 Total: -12.01 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -30.91 -8.70 -39.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036685899.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.052 kcal (2) G-P(sol) polarization free energy of solvation -30.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.608 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds