Wall clock time and date at job start Tue Mar 31 2020 12:25:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86800 * 119.99995 * 2 1 4 4 H 1.48498 * 109.47361 * 240.00401 * 3 2 1 5 5 H 1.48500 * 109.47169 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47103 * 120.00044 * 3 2 1 7 7 C 1.38810 * 120.00179 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00344 * 180.02562 * 7 2 1 9 9 N 1.36932 * 120.00247 * 359.97438 * 7 2 1 10 10 C 1.47437 * 126.05479 * 359.97438 * 9 7 2 11 11 C 1.54491 * 107.15497 * 181.61309 * 10 9 7 12 12 C 1.56020 * 102.62057 * 22.82860 * 11 10 9 13 13 H 1.09007 * 112.89537 * 202.90465 * 12 11 10 14 14 C 1.52734 * 106.47359 * 78.39597 * 12 11 10 15 15 N 1.46529 * 110.46842 * 203.10152 * 14 12 11 16 16 C 1.34780 * 121.00591 * 235.55861 * 15 14 12 17 17 O 1.21273 * 120.00836 * 359.72366 * 16 15 14 18 18 C 1.50710 * 119.99368 * 179.72204 * 16 15 14 19 19 C 1.52998 * 109.47060 * 179.97438 * 18 16 15 20 20 C 1.50696 * 109.47064 * 179.97438 * 19 18 16 21 21 C 1.41385 * 126.57985 * 90.00242 * 20 19 18 22 22 C 1.34507 * 106.84104 * 179.73601 * 21 20 19 23 23 O 1.34300 * 108.42410 * 359.97438 * 22 21 20 24 24 C 1.34307 * 109.47608 * 359.97438 * 23 22 21 25 25 C 1.47135 * 117.97371 * 55.29026 * 15 14 12 26 26 C 1.53051 * 107.68744 * 302.82670 * 25 15 14 27 27 C 1.46469 * 126.06130 * 180.02562 * 9 7 2 28 28 H 1.09008 * 108.33966 * 269.13094 * 27 9 7 29 29 H 0.96999 * 120.00284 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.90158 * 300.99943 * 10 9 7 31 31 H 1.08998 * 109.90014 * 62.05029 * 10 9 7 32 32 H 1.08995 * 110.78417 * 141.11240 * 11 10 9 33 33 H 1.09006 * 110.78195 * 264.35718 * 11 10 9 34 34 H 1.08998 * 109.25296 * 82.77075 * 14 12 11 35 35 H 1.08997 * 109.17676 * 323.38293 * 14 12 11 36 36 H 1.08998 * 109.47150 * 59.99692 * 18 16 15 37 37 H 1.09000 * 109.46941 * 300.00185 * 18 16 15 38 38 H 1.09002 * 109.46661 * 59.99971 * 19 18 16 39 39 H 1.09003 * 109.47111 * 300.00622 * 19 18 16 40 40 H 1.08003 * 126.57418 * 359.76478 * 21 20 19 41 41 H 1.08001 * 125.78847 * 180.02562 * 22 21 20 42 42 H 1.07996 * 125.79095 * 179.97438 * 24 23 22 43 43 H 1.08996 * 109.82142 * 62.37305 * 25 15 14 44 44 H 1.09001 * 109.81842 * 183.28194 * 25 15 14 45 45 H 1.08995 * 109.15197 * 174.82336 * 26 25 15 46 46 H 1.09004 * 109.14942 * 294.04339 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 -0.1405 -2.5436 0.0005 11 6 -0.4378 -4.0591 0.0416 12 6 0.8723 -4.6471 0.6516 13 1 1.0216 -5.6979 0.4027 14 6 0.8003 -4.3956 2.1564 15 7 2.1442 -4.3940 2.7405 16 6 2.4588 -5.2166 3.7607 17 8 1.6226 -5.9697 4.2125 18 6 3.8500 -5.2003 4.3401 19 6 3.9408 -6.2199 5.4773 20 6 5.3320 -6.2041 6.0562 21 6 5.7922 -5.3965 7.1215 22 6 7.0866 -5.7070 7.3149 23 8 7.4327 -6.6550 6.4288 24 6 6.3723 -6.9610 5.6634 25 6 3.1412 -3.4713 2.1753 26 6 3.2674 -3.7810 0.6817 27 6 1.9201 -3.7267 -0.0005 28 1 2.0449 -4.0465 -1.0351 29 1 -0.4850 0.8400 0.0004 30 1 -0.5645 -2.0583 0.8796 31 1 -0.5608 -2.1047 -0.9043 32 1 -1.2920 -4.2683 0.6855 33 1 -0.6084 -4.4472 -0.9626 34 1 0.2044 -5.1795 2.6237 35 1 0.3274 -3.4301 2.3358 36 1 4.0712 -4.2053 4.7261 37 1 4.5701 -5.4570 3.5631 38 1 3.7193 -7.2150 5.0915 39 1 3.2205 -5.9628 6.2540 40 1 5.2150 -4.6699 7.6741 41 1 7.7370 -5.2690 8.0576 42 1 6.3578 -7.6899 4.8666 43 1 2.8115 -2.4415 2.3125 44 1 4.1030 -3.6206 2.6660 45 1 3.9320 -3.0508 0.2200 46 1 3.6902 -4.7780 0.5577 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036685899.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:34 Heat of formation + Delta-G solvation = -14.045672 kcal Electronic energy + Delta-G solvation = -27281.931647 eV Core-core repulsion = 23558.976950 eV Total energy + Delta-G solvation = -3722.954697 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.38899 -41.48428 -39.76671 -36.47891 -35.79877 -34.60366 -33.16636 -32.42579 -31.08085 -30.12024 -29.10369 -27.03245 -26.18722 -24.59311 -23.94970 -22.42068 -21.82547 -21.19330 -20.69037 -19.56484 -18.60439 -18.22785 -17.69671 -17.07343 -16.88544 -16.71755 -16.54590 -16.13456 -15.67047 -15.46706 -15.17127 -14.96968 -14.40892 -14.22249 -13.93196 -13.91067 -13.62377 -13.42338 -13.22324 -13.07223 -13.01836 -12.86069 -12.78832 -12.60077 -12.49682 -12.22689 -12.01586 -11.86161 -11.63870 -11.50976 -11.45462 -11.17577 -10.80253 -10.61826 -10.48952 -9.55717 -9.38018 -8.78813 -7.77494 -5.10549 0.93221 1.49061 1.50950 1.56707 1.66382 1.68271 2.12259 2.38228 2.54181 3.41829 3.51099 3.62859 3.84119 3.92641 3.96258 4.05524 4.08707 4.18894 4.24073 4.28934 4.30500 4.40926 4.49552 4.58864 4.63897 4.67740 4.77431 4.83268 4.85841 4.89945 4.94160 4.99214 5.14613 5.15884 5.26616 5.26926 5.29439 5.39401 5.40751 5.55974 5.61522 5.64982 5.69479 5.81668 6.25861 6.26906 6.54950 7.16156 7.20288 7.86300 8.53559 9.34050 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.015439 B = 0.003314 C = 0.002921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1813.112366 B = 8447.532517 C = 9582.990162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.070 4.070 3 Si 0.968 3.032 4 H -0.279 1.279 5 H -0.304 1.304 6 H -0.275 1.275 7 C -0.218 4.218 8 H 0.092 0.908 9 N -0.608 5.608 10 C 0.186 3.814 11 C -0.131 4.131 12 C -0.102 4.102 13 H 0.104 0.896 14 C 0.133 3.867 15 N -0.603 5.603 16 C 0.511 3.489 17 O -0.589 6.589 18 C -0.122 4.122 19 C -0.025 4.025 20 C -0.193 4.193 21 C -0.230 4.230 22 C -0.041 4.041 23 O -0.190 6.190 24 C -0.042 4.042 25 C 0.118 3.882 26 C -0.124 4.124 27 C 0.161 3.839 28 H 0.015 0.985 29 H 0.242 0.758 30 H 0.009 0.991 31 H 0.003 0.997 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.043 0.957 36 H 0.102 0.898 37 H 0.116 0.884 38 H 0.075 0.925 39 H 0.062 0.938 40 H 0.152 0.848 41 H 0.232 0.768 42 H 0.226 0.774 43 H 0.054 0.946 44 H 0.112 0.888 45 H 0.072 0.928 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.461 -13.450 9.999 21.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.605 5.605 2 C -0.262 4.262 3 Si 0.798 3.202 4 H -0.205 1.205 5 H -0.231 1.231 6 H -0.201 1.201 7 C -0.347 4.347 8 H 0.109 0.891 9 N -0.333 5.333 10 C 0.060 3.940 11 C -0.169 4.169 12 C -0.122 4.122 13 H 0.122 0.878 14 C 0.009 3.991 15 N -0.334 5.334 16 C 0.301 3.699 17 O -0.470 6.470 18 C -0.162 4.162 19 C -0.063 4.063 20 C -0.194 4.194 21 C -0.249 4.249 22 C -0.108 4.108 23 O -0.086 6.086 24 C -0.109 4.109 25 C -0.004 4.004 26 C -0.163 4.163 27 C 0.055 3.945 28 H 0.032 0.968 29 H 0.051 0.949 30 H 0.027 0.973 31 H 0.021 0.979 32 H 0.094 0.906 33 H 0.092 0.908 34 H 0.096 0.904 35 H 0.062 0.938 36 H 0.120 0.880 37 H 0.134 0.866 38 H 0.094 0.906 39 H 0.081 0.919 40 H 0.170 0.830 41 H 0.248 0.752 42 H 0.242 0.758 43 H 0.073 0.927 44 H 0.130 0.870 45 H 0.091 0.909 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 13.280 -13.731 10.204 21.657 hybrid contribution -0.648 1.710 -0.272 1.849 sum 12.632 -12.020 9.933 20.068 Atomic orbital electron populations 1.70175 1.06353 1.24827 1.59156 1.25542 0.96340 1.00728 1.03618 0.85294 0.77113 0.79574 0.78249 1.20478 1.23115 1.20107 1.19328 0.91103 0.82997 1.41272 0.89066 1.44542 1.01772 1.00673 1.86344 1.20949 0.84395 0.91272 0.97351 1.23013 0.97215 0.95779 1.00937 1.22612 0.96204 0.99313 0.94036 0.87754 1.21178 0.84004 1.00879 0.93005 1.48156 1.12805 1.38737 1.33709 1.21273 0.91265 0.78576 0.78751 1.90637 1.52553 1.41984 1.61830 1.21663 0.92403 1.02591 0.99529 1.19546 0.91340 0.99275 0.96176 1.20526 0.97053 1.01285 1.00551 1.22032 0.96489 1.04771 1.01631 1.24628 0.97041 0.92942 0.96209 1.84082 1.37895 1.47378 1.39240 1.24379 0.84184 1.03366 0.98943 1.21763 0.92026 0.92674 0.93904 1.21548 0.97151 1.02511 0.95085 1.20477 0.92788 0.85123 0.96117 0.96797 0.94919 0.97252 0.97857 0.90616 0.90830 0.90409 0.93849 0.87995 0.86554 0.90649 0.91909 0.82980 0.75167 0.75808 0.92726 0.86963 0.90904 0.89563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -56.72 10.38 21.65 0.22 -56.50 16 2 C -0.07 -3.83 5.49 84.86 0.47 -3.36 16 3 Si 0.97 44.39 29.55 68.60 2.03 46.42 16 4 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 5 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 6 H -0.28 -11.99 7.11 99.48 0.71 -11.29 16 7 C -0.22 -11.21 9.02 84.03 0.76 -10.45 16 8 H 0.09 4.35 6.69 -2.91 -0.02 4.33 16 9 N -0.61 -28.77 3.13 -674.44 -2.11 -30.88 16 10 C 0.19 8.95 4.64 86.71 0.40 9.35 16 11 C -0.13 -4.72 6.28 32.15 0.20 -4.52 16 12 C -0.10 -3.36 3.84 -9.51 -0.04 -3.40 16 13 H 0.10 2.97 8.14 -2.38 -0.02 2.95 16 14 C 0.13 4.65 5.44 86.29 0.47 5.12 16 15 N -0.60 -18.75 2.94 -820.54 -2.41 -21.16 16 16 C 0.51 14.99 7.71 87.66 0.68 15.67 16 17 O -0.59 -21.24 15.41 -3.01 -0.05 -21.29 16 18 C -0.12 -2.51 4.04 29.85 0.12 -2.39 16 19 C -0.03 -0.52 5.02 29.85 0.15 -0.37 16 20 C -0.19 -3.55 5.42 -19.94 -0.11 -3.66 16 21 C -0.23 -3.98 10.87 22.19 0.24 -3.74 16 22 C -0.04 -0.59 12.09 66.97 0.81 0.22 16 23 O -0.19 -3.26 10.65 -2.50 -0.03 -3.29 16 24 C -0.04 -0.66 12.01 66.97 0.80 0.15 16 25 C 0.12 3.44 6.27 86.28 0.54 3.98 16 26 C -0.12 -3.70 5.19 30.00 0.16 -3.54 16 27 C 0.16 5.97 2.84 44.71 0.13 6.09 16 28 H 0.01 0.55 8.14 -2.38 -0.02 0.53 16 29 H 0.24 14.23 8.31 -92.71 -0.77 13.46 16 30 H 0.01 0.51 6.99 -2.39 -0.02 0.49 16 31 H 0.00 0.18 7.56 -2.39 -0.02 0.16 16 32 H 0.08 2.51 7.97 -2.39 -0.02 2.49 16 33 H 0.07 2.44 8.14 -2.38 -0.02 2.42 16 34 H 0.08 2.73 7.00 -2.39 -0.02 2.72 16 35 H 0.04 1.81 6.79 -2.39 -0.02 1.80 16 36 H 0.10 1.96 7.90 -2.39 -0.02 1.94 16 37 H 0.12 1.86 7.78 -2.39 -0.02 1.84 16 38 H 0.07 1.57 8.10 -2.39 -0.02 1.55 16 39 H 0.06 1.48 8.10 -2.39 -0.02 1.46 16 40 H 0.15 2.35 8.06 -2.91 -0.02 2.32 16 41 H 0.23 1.49 8.06 -2.91 -0.02 1.46 16 42 H 0.23 2.13 8.06 -2.91 -0.02 2.10 16 43 H 0.05 2.00 7.48 -2.39 -0.02 1.98 16 44 H 0.11 2.37 5.99 -2.39 -0.01 2.35 16 45 H 0.07 2.24 7.01 -2.39 -0.02 2.22 16 46 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 Total: -1.00 -70.02 359.94 4.41 -65.61 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: 0.97 Total: 15.95 kcal Atomic # 6 Polarization: -0.65 SS G_CDS: 5.78 Total: 5.13 kcal Atomic # 7 Polarization: -104.24 SS G_CDS: -4.30 Total: -108.54 kcal Atomic # 8 Polarization: -24.50 SS G_CDS: -0.07 Total: -24.57 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Total: -70.02 4.41 -65.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036685899.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.564 kcal (2) G-P(sol) polarization free energy of solvation -70.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds