Wall clock time and date at job start Tue Mar 31 2020 12:25:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86799 * 120.00049 * 2 1 4 4 H 1.48499 * 109.47317 * 269.99442 * 3 2 1 5 5 H 1.48500 * 109.47186 * 29.99938 * 3 2 1 6 6 H 1.48502 * 109.47213 * 149.99831 * 3 2 1 7 7 C 1.38815 * 120.00075 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00204 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99873 * 0.02562 * 7 2 1 10 10 C 1.48168 * 126.40431 * 0.02562 * 9 7 2 11 11 C 1.55287 * 107.04287 * 175.03554 * 10 9 7 12 12 C 1.53743 * 101.84299 * 337.51719 * 11 10 9 13 13 H 1.09002 * 111.30261 * 281.04484 * 12 11 10 14 14 C 1.52234 * 114.75130 * 153.64804 * 12 11 10 15 15 N 1.48105 * 106.16899 * 191.10412 * 14 12 11 16 16 C 1.34774 * 119.01867 * 231.26124 * 15 14 12 17 17 O 1.21276 * 120.00366 * 359.45691 * 16 15 14 18 18 C 1.50702 * 119.99518 * 179.45650 * 16 15 14 19 19 C 1.53003 * 109.46987 * 179.97438 * 18 16 15 20 20 C 1.50702 * 109.46987 * 179.97438 * 19 18 16 21 21 C 1.41385 * 126.57468 * 90.00506 * 20 19 18 22 22 C 1.34512 * 106.83716 * 179.97438 * 21 20 19 23 23 O 1.34299 * 108.42255 * 0.02562 * 22 21 20 24 24 C 1.34302 * 109.47760 * 359.76615 * 23 22 21 25 25 C 1.46587 * 121.28972 * 50.70896 * 15 14 12 26 26 C 1.53956 * 110.58915 * 312.74183 * 25 15 14 27 27 C 1.45470 * 126.40601 * 179.97438 * 9 7 2 28 28 H 1.09001 * 109.27066 * 93.82958 * 27 9 7 29 29 H 0.97005 * 120.00046 * 0.02562 * 1 2 3 30 30 H 1.08995 * 109.92214 * 55.68294 * 10 9 7 31 31 H 1.09003 * 109.91200 * 294.37946 * 10 9 7 32 32 H 1.08996 * 110.95674 * 219.38076 * 11 10 9 33 33 H 1.08998 * 110.95592 * 95.65362 * 11 10 9 34 34 H 1.09005 * 110.07188 * 308.67017 * 14 12 11 35 35 H 1.09008 * 110.07147 * 70.24828 * 14 12 11 36 36 H 1.08996 * 109.47428 * 300.00276 * 18 16 15 37 37 H 1.09004 * 109.46869 * 60.00214 * 18 16 15 38 38 H 1.08996 * 109.47633 * 300.00605 * 19 18 16 39 39 H 1.09004 * 109.46771 * 60.00607 * 19 18 16 40 40 H 1.08002 * 126.58070 * 0.02562 * 21 20 19 41 41 H 1.08008 * 125.79015 * 180.02562 * 22 21 20 42 42 H 1.07995 * 125.79258 * 180.23905 * 24 23 22 43 43 H 1.09000 * 109.25567 * 192.45701 * 25 15 14 44 44 H 1.09001 * 109.22726 * 73.00707 * 25 15 14 45 45 H 1.09003 * 109.87952 * 291.59057 * 26 25 15 46 46 H 1.08994 * 109.88506 * 170.50817 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.1469 -2.5533 -0.0005 11 6 -0.4341 -4.0740 -0.1286 12 6 0.8687 -4.5890 -0.7619 13 1 0.8929 -4.3918 -1.8337 14 6 1.1902 -6.0466 -0.4627 15 7 2.5828 -6.2636 -0.9179 16 6 2.8493 -7.3023 -1.7342 17 8 1.9570 -8.0485 -2.0774 18 6 4.2564 -7.5365 -2.2206 19 6 4.2846 -8.7705 -3.1248 20 6 5.6915 -9.0043 -3.6117 21 6 6.6814 -9.7923 -2.9807 22 6 7.7818 -9.7262 -3.7514 23 8 7.5127 -8.9440 -4.8094 24 6 6.2450 -8.5072 -4.7324 25 6 3.6666 -5.3660 -0.5075 26 6 3.2478 -3.8951 -0.6849 27 6 1.9078 -3.7212 0.0005 28 1 1.9888 -4.0783 1.0272 29 1 -0.4850 0.8401 -0.0004 30 1 -0.5797 -2.0210 -0.8475 31 1 -0.5637 -2.1739 0.9325 32 1 -1.2851 -4.2561 -0.7848 33 1 -0.5958 -4.5240 0.8510 34 1 1.1397 -6.2280 0.6110 35 1 0.4916 -6.6990 -0.9867 36 1 4.5963 -6.6663 -2.7821 37 1 4.9140 -7.6974 -1.3663 38 1 3.9448 -9.6405 -2.5630 39 1 3.6269 -8.6100 -3.9791 40 1 6.5742 -10.3424 -2.0575 41 1 8.7224 -10.2187 -3.5530 42 1 5.7539 -7.8643 -5.4478 43 1 4.5481 -5.5647 -1.1169 44 1 3.9057 -5.5476 0.5404 45 1 3.1548 -3.6616 -1.7456 46 1 3.9877 -3.2408 -0.2239 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036685901.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:41 Heat of formation + Delta-G solvation = 4.674751 kcal Electronic energy + Delta-G solvation = -26744.424192 eV Core-core repulsion = 23022.281274 eV Total energy + Delta-G solvation = -3722.142919 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.77621 -40.23958 -38.33478 -35.39508 -35.01985 -32.77669 -31.69421 -31.53950 -29.89955 -29.15746 -28.07136 -25.31502 -24.63308 -23.00497 -22.36216 -21.83298 -20.48869 -20.07289 -19.71058 -18.73972 -17.80122 -16.95040 -16.21776 -16.18404 -15.79690 -15.61415 -15.06476 -14.86348 -14.39573 -14.18500 -13.90537 -13.69798 -13.18320 -13.07283 -13.03499 -12.75578 -12.53982 -12.36842 -12.30347 -12.04020 -11.64447 -11.47831 -11.40865 -11.09824 -10.84175 -10.82298 -10.72180 -10.17481 -10.10090 -9.96821 -9.87683 -9.64808 -9.58250 -9.47015 -8.77278 -8.64422 -8.49024 -6.85764 -5.73551 -3.06854 1.52807 2.33055 2.71365 2.91161 3.11923 3.37835 3.42711 3.44884 4.41127 4.47250 4.56032 4.71376 4.91063 4.91695 5.00464 5.06626 5.11792 5.25030 5.32962 5.42782 5.47098 5.52439 5.55312 5.59423 5.61501 5.79415 5.83700 5.88689 5.95261 6.02583 6.03003 6.14498 6.17257 6.22520 6.28145 6.35651 6.50257 6.60316 6.62604 6.82762 6.87829 7.05061 7.50900 7.53758 7.60173 7.79208 8.22418 8.25979 9.17285 9.80974 10.49173 11.38985 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.018048 B = 0.002783 C = 0.002496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.022791 B =10059.678018 C =11214.453677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.008 4.008 3 Si 0.910 3.090 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.226 4.226 8 H 0.078 0.922 9 N -0.595 5.595 10 C 0.177 3.823 11 C -0.136 4.136 12 C -0.124 4.124 13 H 0.078 0.922 14 C 0.127 3.873 15 N -0.608 5.608 16 C 0.510 3.490 17 O -0.551 6.551 18 C -0.135 4.135 19 C -0.034 4.034 20 C -0.178 4.178 21 C -0.209 4.209 22 C -0.045 4.045 23 O -0.179 6.179 24 C -0.040 4.040 25 C 0.112 3.888 26 C -0.131 4.131 27 C 0.168 3.832 28 H 0.019 0.981 29 H 0.252 0.748 30 H 0.054 0.946 31 H 0.038 0.962 32 H 0.061 0.939 33 H 0.058 0.942 34 H 0.065 0.935 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.147 0.853 41 H 0.201 0.799 42 H 0.202 0.798 43 H 0.080 0.920 44 H 0.065 0.935 45 H 0.067 0.933 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.702 -17.932 -4.751 21.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.205 4.205 3 Si 0.740 3.260 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.354 4.354 8 H 0.096 0.904 9 N -0.319 5.319 10 C 0.053 3.947 11 C -0.175 4.175 12 C -0.145 4.145 13 H 0.096 0.904 14 C 0.006 3.994 15 N -0.341 5.341 16 C 0.298 3.702 17 O -0.429 6.429 18 C -0.174 4.174 19 C -0.072 4.072 20 C -0.179 4.179 21 C -0.228 4.228 22 C -0.113 4.113 23 O -0.074 6.074 24 C -0.107 4.107 25 C -0.011 4.011 26 C -0.170 4.170 27 C 0.060 3.940 28 H 0.036 0.964 29 H 0.063 0.937 30 H 0.073 0.927 31 H 0.056 0.944 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.110 0.890 36 H 0.112 0.888 37 H 0.111 0.889 38 H 0.098 0.902 39 H 0.097 0.903 40 H 0.165 0.835 41 H 0.217 0.783 42 H 0.218 0.782 43 H 0.099 0.901 44 H 0.083 0.917 45 H 0.086 0.914 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 11.383 -17.974 -5.110 21.881 hybrid contribution 0.418 1.043 0.274 1.156 sum 11.802 -16.931 -4.836 21.198 Atomic orbital electron populations 1.69940 1.04904 1.25053 1.56967 1.24797 0.95679 0.97648 1.02328 0.86153 0.78602 0.83666 0.77541 1.21655 1.21701 1.20710 1.18988 0.90336 0.82309 1.43784 0.90388 1.44209 1.01671 0.99452 1.86592 1.21534 0.83920 0.88325 1.00960 1.22717 0.95819 0.99667 0.99325 1.22624 0.97862 0.93324 1.00644 0.90363 1.21667 0.81645 0.96953 0.99184 1.48475 1.09623 1.27653 1.48376 1.20696 0.90940 0.80498 0.78071 1.90666 1.48031 1.46521 1.57708 1.21697 0.94615 1.00013 1.01118 1.19698 0.90527 0.97557 0.99419 1.20527 0.97922 1.02484 0.96960 1.21788 0.93515 1.04734 1.02747 1.24016 1.00929 0.98393 0.87918 1.84070 1.29357 1.52042 1.41978 1.23941 0.82580 1.03390 1.00823 1.21798 0.88729 0.90366 1.00206 1.21906 0.99511 0.93545 1.02024 1.20603 0.91076 0.87217 0.95126 0.96354 0.93742 0.92728 0.94360 0.92066 0.92345 0.91676 0.88999 0.88832 0.88944 0.90230 0.90315 0.83507 0.78279 0.78158 0.90147 0.91659 0.91412 0.90515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.78 10.44 55.49 0.58 -26.20 16 2 C -0.01 -0.23 5.49 -17.43 -0.10 -0.32 16 3 Si 0.91 21.73 29.55 -169.99 -5.02 16.71 16 4 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.23 -6.06 9.88 -15.06 -0.15 -6.21 16 8 H 0.08 2.00 7.21 -52.49 -0.38 1.62 16 9 N -0.59 -14.64 3.35 -163.08 -0.55 -15.18 16 10 C 0.18 4.23 5.45 -1.91 -0.01 4.22 16 11 C -0.14 -2.52 6.53 -25.13 -0.16 -2.68 16 12 C -0.12 -2.19 2.81 -89.36 -0.25 -2.44 16 13 H 0.08 1.50 8.12 -51.93 -0.42 1.08 16 14 C 0.13 1.93 5.96 -3.55 -0.02 1.91 16 15 N -0.61 -8.51 3.02 -172.17 -0.52 -9.03 16 16 C 0.51 7.05 7.66 -10.99 -0.08 6.96 16 17 O -0.55 -9.35 15.33 5.56 0.09 -9.26 16 18 C -0.13 -1.37 4.01 -27.88 -0.11 -1.48 16 19 C -0.03 -0.34 5.02 -27.88 -0.14 -0.48 16 20 C -0.18 -1.68 5.42 -104.74 -0.57 -2.25 16 21 C -0.21 -1.79 10.87 -39.70 -0.43 -2.22 16 22 C -0.05 -0.35 12.09 29.42 0.36 0.01 16 23 O -0.18 -1.68 10.65 5.72 0.06 -1.62 16 24 C -0.04 -0.35 12.01 29.41 0.35 0.00 16 25 C 0.11 1.41 6.22 -3.50 -0.02 1.38 16 26 C -0.13 -2.13 5.48 -26.98 -0.15 -2.27 16 27 C 0.17 3.28 2.58 -67.97 -0.18 3.11 16 28 H 0.02 0.38 7.96 -51.93 -0.41 -0.03 16 29 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 30 H 0.05 1.45 7.21 -51.93 -0.37 1.08 16 31 H 0.04 1.00 7.77 -51.93 -0.40 0.60 16 32 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.06 1.00 8.12 -51.93 -0.42 0.58 16 34 H 0.06 0.94 8.10 -51.93 -0.42 0.52 16 35 H 0.09 1.44 7.06 -51.92 -0.37 1.07 16 36 H 0.09 0.86 7.55 -51.93 -0.39 0.47 16 37 H 0.09 0.82 7.99 -51.93 -0.41 0.40 16 38 H 0.08 0.86 8.10 -51.93 -0.42 0.44 16 39 H 0.08 0.83 8.10 -51.93 -0.42 0.41 16 40 H 0.15 1.04 8.06 -52.49 -0.42 0.62 16 41 H 0.20 0.81 8.06 -52.48 -0.42 0.38 16 42 H 0.20 1.25 8.06 -52.49 -0.42 0.82 16 43 H 0.08 0.80 5.84 -51.93 -0.30 0.50 16 44 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.07 1.17 8.12 -51.93 -0.42 0.75 16 46 H 0.08 1.26 7.62 -51.93 -0.40 0.86 16 LS Contribution 364.77 15.07 5.50 5.50 Total: -1.00 -32.45 364.77 -8.75 -41.20 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -7.22 Total: 0.66 kcal Atomic # 6 Polarization: -1.10 SS G_CDS: -1.66 Total: -2.77 kcal Atomic # 7 Polarization: -49.93 SS G_CDS: -0.49 Total: -50.42 kcal Atomic # 8 Polarization: -11.03 SS G_CDS: 0.15 Total: -10.88 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.45 -8.75 -41.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036685901.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.870 kcal (2) G-P(sol) polarization free energy of solvation -32.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds