Wall clock time and date at job start Tue Mar 31 2020 12:25:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86799 * 120.00049 * 2 1 4 4 H 1.48499 * 109.47317 * 269.99442 * 3 2 1 5 5 H 1.48500 * 109.47186 * 29.99938 * 3 2 1 6 6 H 1.48502 * 109.47213 * 149.99831 * 3 2 1 7 7 C 1.38815 * 120.00075 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00204 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99873 * 0.02562 * 7 2 1 10 10 C 1.48168 * 126.40431 * 0.02562 * 9 7 2 11 11 C 1.55287 * 107.04287 * 175.03554 * 10 9 7 12 12 C 1.53743 * 101.84299 * 337.51719 * 11 10 9 13 13 H 1.09002 * 111.30261 * 281.04484 * 12 11 10 14 14 C 1.52234 * 114.75130 * 153.64804 * 12 11 10 15 15 N 1.48105 * 106.16899 * 191.10412 * 14 12 11 16 16 C 1.34774 * 119.01867 * 231.26124 * 15 14 12 17 17 O 1.21276 * 120.00366 * 359.45691 * 16 15 14 18 18 C 1.50702 * 119.99518 * 179.45650 * 16 15 14 19 19 C 1.53003 * 109.46987 * 179.97438 * 18 16 15 20 20 C 1.50702 * 109.46987 * 179.97438 * 19 18 16 21 21 C 1.41385 * 126.57468 * 90.00506 * 20 19 18 22 22 C 1.34512 * 106.83716 * 179.97438 * 21 20 19 23 23 O 1.34299 * 108.42255 * 0.02562 * 22 21 20 24 24 C 1.34302 * 109.47760 * 359.76615 * 23 22 21 25 25 C 1.46587 * 121.28972 * 50.70896 * 15 14 12 26 26 C 1.53956 * 110.58915 * 312.74183 * 25 15 14 27 27 C 1.45470 * 126.40601 * 179.97438 * 9 7 2 28 28 H 1.09001 * 109.27066 * 93.82958 * 27 9 7 29 29 H 0.97005 * 120.00046 * 0.02562 * 1 2 3 30 30 H 1.08995 * 109.92214 * 55.68294 * 10 9 7 31 31 H 1.09003 * 109.91200 * 294.37946 * 10 9 7 32 32 H 1.08996 * 110.95674 * 219.38076 * 11 10 9 33 33 H 1.08998 * 110.95592 * 95.65362 * 11 10 9 34 34 H 1.09005 * 110.07188 * 308.67017 * 14 12 11 35 35 H 1.09008 * 110.07147 * 70.24828 * 14 12 11 36 36 H 1.08996 * 109.47428 * 300.00276 * 18 16 15 37 37 H 1.09004 * 109.46869 * 60.00214 * 18 16 15 38 38 H 1.08996 * 109.47633 * 300.00605 * 19 18 16 39 39 H 1.09004 * 109.46771 * 60.00607 * 19 18 16 40 40 H 1.08002 * 126.58070 * 0.02562 * 21 20 19 41 41 H 1.08008 * 125.79015 * 180.02562 * 22 21 20 42 42 H 1.07995 * 125.79258 * 180.23905 * 24 23 22 43 43 H 1.09000 * 109.25567 * 192.45701 * 25 15 14 44 44 H 1.09001 * 109.22726 * 73.00707 * 25 15 14 45 45 H 1.09003 * 109.87952 * 291.59057 * 26 25 15 46 46 H 1.08994 * 109.88506 * 170.50817 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.1469 -2.5533 -0.0005 11 6 -0.4341 -4.0740 -0.1286 12 6 0.8687 -4.5890 -0.7619 13 1 0.8929 -4.3918 -1.8337 14 6 1.1902 -6.0466 -0.4627 15 7 2.5828 -6.2636 -0.9179 16 6 2.8493 -7.3023 -1.7342 17 8 1.9570 -8.0485 -2.0774 18 6 4.2564 -7.5365 -2.2206 19 6 4.2846 -8.7705 -3.1248 20 6 5.6915 -9.0043 -3.6117 21 6 6.6814 -9.7923 -2.9807 22 6 7.7818 -9.7262 -3.7514 23 8 7.5127 -8.9440 -4.8094 24 6 6.2450 -8.5072 -4.7324 25 6 3.6666 -5.3660 -0.5075 26 6 3.2478 -3.8951 -0.6849 27 6 1.9078 -3.7212 0.0005 28 1 1.9888 -4.0783 1.0272 29 1 -0.4850 0.8401 -0.0004 30 1 -0.5797 -2.0210 -0.8475 31 1 -0.5637 -2.1739 0.9325 32 1 -1.2851 -4.2561 -0.7848 33 1 -0.5958 -4.5240 0.8510 34 1 1.1397 -6.2280 0.6110 35 1 0.4916 -6.6990 -0.9867 36 1 4.5963 -6.6663 -2.7821 37 1 4.9140 -7.6974 -1.3663 38 1 3.9448 -9.6405 -2.5630 39 1 3.6269 -8.6100 -3.9791 40 1 6.5742 -10.3424 -2.0575 41 1 8.7224 -10.2187 -3.5530 42 1 5.7539 -7.8643 -5.4478 43 1 4.5481 -5.5647 -1.1169 44 1 3.9057 -5.5476 0.5404 45 1 3.1548 -3.6616 -1.7456 46 1 3.9877 -3.2408 -0.2239 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036685901.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:40 Heat of formation + Delta-G solvation = -14.274638 kcal Electronic energy + Delta-G solvation = -26745.245899 eV Core-core repulsion = 23022.281274 eV Total energy + Delta-G solvation = -3722.964626 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.39280 -41.45689 -39.75016 -36.79286 -35.80329 -34.54067 -33.03343 -32.48003 -31.30594 -30.18889 -29.43691 -26.75204 -26.04194 -24.25930 -23.72319 -22.41692 -21.88251 -21.29256 -20.96357 -19.89819 -18.74400 -18.30755 -17.55146 -16.99890 -16.89090 -16.75953 -16.59880 -15.99251 -15.70016 -15.48746 -15.15222 -15.00637 -14.55047 -14.28856 -14.07099 -13.81555 -13.61289 -13.47396 -13.29038 -13.12508 -13.07804 -12.97706 -12.87017 -12.66739 -12.45899 -12.08624 -11.99673 -11.84793 -11.76036 -11.60354 -11.50697 -11.02016 -10.78832 -10.70394 -10.48556 -9.65834 -9.38458 -8.87034 -7.82754 -5.17265 0.92732 1.46696 1.48216 1.56561 1.64391 1.69198 2.05068 2.38112 2.51261 3.36147 3.42229 3.58627 3.85847 3.88503 3.95101 4.00770 4.05004 4.18800 4.23040 4.23784 4.29850 4.40646 4.44164 4.52501 4.64566 4.68413 4.73571 4.81947 4.85501 4.87195 4.90776 4.93082 5.06905 5.09736 5.15853 5.23732 5.27415 5.39156 5.47444 5.55029 5.56901 5.65684 5.66603 5.76705 6.21288 6.27189 6.43716 7.09832 7.18568 7.80383 8.49365 9.29350 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.018048 B = 0.002783 C = 0.002496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.022791 B =10059.678018 C =11214.453677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.072 4.072 3 Si 0.975 3.025 4 H -0.288 1.288 5 H -0.299 1.299 6 H -0.265 1.265 7 C -0.228 4.228 8 H 0.089 0.911 9 N -0.616 5.616 10 C 0.182 3.818 11 C -0.123 4.123 12 C -0.109 4.109 13 H 0.060 0.940 14 C 0.135 3.865 15 N -0.611 5.611 16 C 0.508 3.492 17 O -0.586 6.586 18 C -0.125 4.125 19 C -0.027 4.027 20 C -0.192 4.192 21 C -0.226 4.226 22 C -0.043 4.043 23 O -0.192 6.192 24 C -0.047 4.047 25 C 0.120 3.880 26 C -0.125 4.125 27 C 0.157 3.843 28 H 0.022 0.978 29 H 0.244 0.756 30 H 0.016 0.984 31 H 0.004 0.996 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.088 0.912 36 H 0.109 0.891 37 H 0.114 0.886 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.158 0.842 41 H 0.233 0.767 42 H 0.219 0.781 43 H 0.115 0.885 44 H 0.083 0.917 45 H 0.054 0.946 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.503 -19.549 -4.686 24.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.606 5.606 2 C -0.265 4.265 3 Si 0.804 3.196 4 H -0.216 1.216 5 H -0.226 1.226 6 H -0.189 1.189 7 C -0.357 4.357 8 H 0.107 0.893 9 N -0.340 5.340 10 C 0.057 3.943 11 C -0.162 4.162 12 C -0.129 4.129 13 H 0.079 0.921 14 C 0.013 3.987 15 N -0.344 5.344 16 C 0.298 3.702 17 O -0.467 6.467 18 C -0.165 4.165 19 C -0.065 4.065 20 C -0.193 4.193 21 C -0.245 4.245 22 C -0.109 4.109 23 O -0.088 6.088 24 C -0.114 4.114 25 C -0.002 4.002 26 C -0.164 4.164 27 C 0.050 3.950 28 H 0.039 0.961 29 H 0.053 0.947 30 H 0.034 0.966 31 H 0.022 0.978 32 H 0.094 0.906 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.107 0.893 36 H 0.127 0.873 37 H 0.132 0.868 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.176 0.824 41 H 0.249 0.751 42 H 0.236 0.764 43 H 0.133 0.867 44 H 0.102 0.898 45 H 0.073 0.927 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 14.232 -19.625 -5.041 24.761 hybrid contribution -0.453 1.494 0.255 1.582 sum 13.779 -18.131 -4.786 23.270 Atomic orbital electron populations 1.70172 1.06429 1.25064 1.58886 1.25645 0.96518 1.01061 1.03242 0.85121 0.77807 0.79379 0.77330 1.21556 1.22612 1.18941 1.19426 0.91087 0.83326 1.41851 0.89290 1.44504 1.02185 1.00941 1.86403 1.21297 0.83888 0.91608 0.97532 1.22590 0.97035 0.95573 1.00956 1.22447 0.96485 0.94857 0.99109 0.92137 1.21497 0.82738 0.94513 0.99990 1.48548 1.09303 1.28056 1.48445 1.21315 0.92056 0.79682 0.77114 1.90657 1.49487 1.47740 1.58772 1.21708 0.92266 1.00567 1.01950 1.19561 0.90884 0.97175 0.98888 1.20550 0.97681 1.03408 0.97655 1.22033 0.93673 1.05183 1.03580 1.24682 1.01937 0.97433 0.86894 1.84082 1.29577 1.52444 1.42696 1.24337 0.82535 1.03501 1.01059 1.21868 0.89025 0.87214 1.02133 1.21838 0.97450 0.96516 1.00605 1.20854 0.93382 0.84931 0.95786 0.96105 0.94652 0.96586 0.97811 0.90570 0.90400 0.90341 0.89341 0.87274 0.86792 0.91286 0.91361 0.82396 0.75114 0.76408 0.86724 0.89845 0.92720 0.90530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -57.93 10.44 21.65 0.23 -57.71 16 2 C -0.07 -4.08 5.49 84.86 0.47 -3.62 16 3 Si 0.97 45.32 29.55 68.60 2.03 47.35 16 4 H -0.29 -13.24 7.11 99.48 0.71 -12.54 16 5 H -0.30 -14.20 7.11 99.48 0.71 -13.50 16 6 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 7 C -0.23 -12.34 9.88 84.03 0.83 -11.51 16 8 H 0.09 4.50 7.21 -2.91 -0.02 4.47 16 9 N -0.62 -30.76 3.35 -669.86 -2.24 -33.01 16 10 C 0.18 9.03 5.45 86.84 0.47 9.50 16 11 C -0.12 -4.51 6.53 31.63 0.21 -4.31 16 12 C -0.11 -3.73 2.81 -9.98 -0.03 -3.76 16 13 H 0.06 2.30 8.12 -2.39 -0.02 2.28 16 14 C 0.14 3.83 5.96 85.82 0.51 4.34 16 15 N -0.61 -15.41 3.02 -817.03 -2.47 -17.87 16 16 C 0.51 12.82 7.66 87.66 0.67 13.49 16 17 O -0.59 -19.11 15.33 -3.02 -0.05 -19.15 16 18 C -0.13 -2.15 4.01 29.85 0.12 -2.03 16 19 C -0.03 -0.50 5.02 29.85 0.15 -0.35 16 20 C -0.19 -3.23 5.42 -19.94 -0.11 -3.33 16 21 C -0.23 -3.33 10.87 22.19 0.24 -3.09 16 22 C -0.04 -0.54 12.09 66.97 0.81 0.27 16 23 O -0.19 -3.18 10.65 -2.44 -0.03 -3.21 16 24 C -0.05 -0.74 12.01 66.97 0.80 0.07 16 25 C 0.12 2.56 6.22 86.69 0.54 3.10 16 26 C -0.12 -3.81 5.48 30.43 0.17 -3.64 16 27 C 0.16 5.99 2.58 45.52 0.12 6.11 16 28 H 0.02 0.82 7.96 -2.39 -0.02 0.80 16 29 H 0.24 14.49 8.31 -92.70 -0.77 13.72 16 30 H 0.02 0.90 7.21 -2.39 -0.02 0.88 16 31 H 0.00 0.20 7.77 -2.39 -0.02 0.18 16 32 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 33 H 0.08 2.57 8.12 -2.39 -0.02 2.55 16 34 H 0.08 2.05 8.10 -2.38 -0.02 2.03 16 35 H 0.09 2.63 7.06 -2.38 -0.02 2.61 16 36 H 0.11 1.59 7.55 -2.39 -0.02 1.57 16 37 H 0.11 1.52 7.99 -2.38 -0.02 1.50 16 38 H 0.07 1.40 8.10 -2.39 -0.02 1.38 16 39 H 0.07 1.38 8.10 -2.38 -0.02 1.36 16 40 H 0.16 1.85 8.06 -2.91 -0.02 1.83 16 41 H 0.23 1.08 8.06 -2.91 -0.02 1.06 16 42 H 0.22 2.28 8.06 -2.91 -0.02 2.26 16 43 H 0.11 1.72 5.84 -2.39 -0.01 1.71 16 44 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 45 H 0.05 1.80 8.12 -2.39 -0.02 1.78 16 46 H 0.08 2.34 7.62 -2.39 -0.02 2.32 16 Total: -1.00 -73.13 364.77 4.40 -68.72 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: 0.96 Total: 13.63 kcal Atomic # 6 Polarization: -4.73 SS G_CDS: 5.97 Total: 1.24 kcal Atomic # 7 Polarization: -104.10 SS G_CDS: -4.48 Total: -108.58 kcal Atomic # 8 Polarization: -22.29 SS G_CDS: -0.07 Total: -22.36 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Total: -73.13 4.40 -68.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036685901.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.448 kcal (2) G-P(sol) polarization free energy of solvation -73.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds