Wall clock time and date at job start Tue Mar 31 2020 12:17:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86799 * 119.99896 * 2 1 4 4 H 1.48494 * 109.47345 * 270.00201 * 3 2 1 5 5 H 1.48506 * 109.47087 * 30.00213 * 3 2 1 6 6 H 1.48503 * 109.47344 * 149.99767 * 3 2 1 7 7 C 1.38807 * 119.99977 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99656 * 180.02562 * 7 2 1 9 9 N 1.36930 * 120.00129 * 0.02562 * 7 2 1 10 10 C 1.47022 * 125.65147 * 359.96061 * 9 7 2 11 11 C 1.54367 * 107.29082 * 181.12783 * 10 9 7 12 12 C 1.55150 * 102.92152 * 22.13770 * 11 10 9 13 13 H 1.08998 * 111.00689 * 82.64244 * 12 11 10 14 14 C 1.53004 * 111.00172 * 206.45511 * 12 11 10 15 15 C 1.53038 * 109.46077 * 296.81451 * 14 12 11 16 16 C 1.53190 * 109.34019 * 178.60078 * 15 14 12 17 17 N 1.46998 * 108.73810 * 54.62370 * 16 15 14 18 18 C 1.34774 * 120.61333 * 126.41009 * 17 16 15 19 19 O 1.21695 * 120.00244 * 173.57524 * 18 17 16 20 20 C 1.46662 * 119.99937 * 353.58118 * 18 17 16 21 21 C 1.36537 * 125.98778 * 173.15953 * 20 18 17 22 22 C 1.40367 * 106.71107 * 179.90785 * 21 20 18 23 23 C 1.35131 * 107.11109 * 0.34666 * 22 21 20 24 24 O 1.33928 * 108.76827 * 359.78550 * 23 22 21 25 25 C 1.46920 * 118.75311 * 306.41025 * 17 16 15 26 26 C 1.53046 * 109.45874 * 176.75097 * 14 12 11 27 27 C 1.47433 * 125.65013 * 179.97438 * 9 7 2 28 28 H 0.97006 * 120.00137 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.88031 * 300.51416 * 10 9 7 30 30 H 1.09008 * 109.88383 * 61.67002 * 10 9 7 31 31 H 1.09001 * 110.70585 * 263.78853 * 11 10 9 32 32 H 1.09003 * 110.75183 * 140.50813 * 11 10 9 33 33 H 1.09000 * 109.44992 * 56.78776 * 14 12 11 34 34 H 1.08997 * 109.49770 * 298.57214 * 15 14 12 35 35 H 1.09009 * 109.49162 * 58.63274 * 15 14 12 36 36 H 1.08999 * 109.58588 * 174.44329 * 16 15 14 37 37 H 1.09000 * 109.58480 * 294.86347 * 16 15 14 38 38 H 1.08001 * 126.64853 * 0.03148 * 21 20 18 39 39 H 1.07998 * 126.44384 * 180.15734 * 22 21 20 40 40 H 1.07995 * 125.61354 * 179.77957 * 23 22 21 41 41 H 1.09000 * 109.59155 * 293.81998 * 25 17 16 42 42 H 1.09000 * 109.70317 * 173.46381 * 25 17 16 43 43 H 1.09004 * 109.49413 * 301.33845 * 26 14 12 44 44 H 1.09004 * 109.49906 * 61.39626 * 26 14 12 45 45 H 1.08998 * 110.35856 * 37.00101 * 27 9 7 46 46 H 1.08994 * 110.46068 * 274.72880 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5478 1.4403 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3256 -2.3880 -0.0016 10 6 -0.1374 -2.5328 -0.0014 11 6 -0.4489 -4.0445 0.0261 12 6 0.8521 -4.6561 0.6097 13 1 0.8577 -4.5970 1.6980 14 6 1.0371 -6.1008 0.1410 15 6 -0.1122 -6.9604 0.6723 16 6 0.0568 -8.3986 0.1726 17 7 1.3941 -8.8763 0.5524 18 6 1.5426 -10.0267 1.2388 19 8 2.6559 -10.4722 1.4460 20 6 0.3624 -10.7416 1.7359 21 6 0.3598 -11.9730 2.3257 22 6 -0.9758 -12.2654 2.6434 23 6 -1.7214 -11.2163 2.2316 24 8 -0.9115 -10.3002 1.6853 25 6 2.5654 -8.0764 0.1697 26 6 2.3675 -6.6419 0.6695 27 6 1.9335 -3.7311 -0.0028 28 1 -0.4850 0.8401 -0.0004 29 1 -0.5574 -2.0522 0.8822 30 1 -0.5545 -2.0843 -0.9032 31 1 -0.6329 -4.4184 -0.9811 32 1 -1.2984 -4.2520 0.6768 33 1 1.0398 -6.1314 -0.9486 34 1 -0.1004 -6.9501 1.7622 35 1 -1.0611 -6.5601 0.3150 36 1 -0.7023 -9.0350 0.6274 37 1 -0.0454 -8.4228 -0.9123 38 1 1.2191 -12.5997 2.5135 39 1 -1.3396 -13.1618 3.1235 40 1 -2.7937 -11.1308 2.3273 41 1 2.6679 -8.0743 -0.9155 42 1 3.4629 -8.4998 0.6207 43 1 3.1837 -6.0153 0.3097 44 1 2.3563 -6.6341 1.7594 45 1 2.8334 -3.7406 0.6122 46 1 2.1673 -4.0426 -1.0208 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039100721.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:01 Heat of formation + Delta-G solvation = 11.775302 kcal Electronic energy + Delta-G solvation = -26971.120750 eV Core-core repulsion = 23249.285735 eV Total energy + Delta-G solvation = -3721.835016 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -43.07106 -40.16875 -38.42294 -36.69471 -33.93043 -33.33236 -31.94409 -31.41704 -30.04414 -29.14074 -27.72990 -25.40810 -24.30966 -23.37324 -22.65059 -22.08637 -20.91652 -19.97030 -19.81529 -19.43036 -17.96946 -17.00694 -16.77273 -16.59688 -16.07207 -15.23541 -14.93848 -14.48129 -14.42841 -14.27677 -13.84548 -13.80110 -13.48784 -13.30233 -13.16106 -13.05160 -12.52179 -12.34926 -12.15677 -11.98841 -11.72922 -11.29046 -11.03947 -10.97561 -10.83846 -10.71785 -10.55536 -10.41624 -10.36491 -10.07935 -9.81288 -9.78202 -9.68745 -9.56022 -9.11924 -8.74210 -8.56708 -6.78279 -5.67847 -3.00765 0.76310 2.03247 2.28721 2.84441 2.95115 3.41602 3.46505 3.48433 4.16326 4.51911 4.53869 4.60215 4.77198 4.82044 4.84132 5.02130 5.15281 5.19582 5.37917 5.40924 5.44925 5.50851 5.54117 5.58158 5.67340 5.70378 5.82462 5.85979 5.95083 5.97673 6.01219 6.02973 6.16629 6.19644 6.35665 6.42783 6.48247 6.54092 6.59884 6.64362 6.80251 7.03637 7.12262 7.60084 7.68145 7.80399 7.86541 8.30479 9.26303 9.87056 10.53826 11.43917 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.030772 B = 0.002544 C = 0.002406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.696102 B =11003.489579 C =11635.383758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.011 4.011 3 Si 0.911 3.089 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.226 4.226 8 H 0.077 0.923 9 N -0.607 5.607 10 C 0.177 3.823 11 C -0.138 4.138 12 C -0.096 4.096 13 H 0.071 0.929 14 C -0.075 4.075 15 C -0.126 4.126 16 C 0.090 3.910 17 N -0.599 5.599 18 C 0.600 3.400 19 O -0.527 6.527 20 C -0.075 4.075 21 C -0.122 4.122 22 C -0.225 4.225 23 C -0.016 4.016 24 O -0.155 6.155 25 C 0.113 3.887 26 C -0.130 4.130 27 C 0.142 3.858 28 H 0.251 0.749 29 H 0.043 0.957 30 H 0.039 0.961 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.072 0.928 34 H 0.066 0.934 35 H 0.080 0.920 36 H 0.108 0.892 37 H 0.072 0.928 38 H 0.159 0.841 39 H 0.155 0.845 40 H 0.209 0.791 41 H 0.071 0.929 42 H 0.092 0.908 43 H 0.083 0.917 44 H 0.066 0.934 45 H 0.035 0.965 46 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.442 -24.147 2.551 24.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.206 4.206 3 Si 0.742 3.258 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.354 4.354 8 H 0.095 0.905 9 N -0.333 5.333 10 C 0.053 3.947 11 C -0.176 4.176 12 C -0.115 4.115 13 H 0.089 0.911 14 C -0.094 4.094 15 C -0.164 4.164 16 C -0.032 4.032 17 N -0.330 5.330 18 C 0.388 3.612 19 O -0.406 6.406 20 C -0.126 4.126 21 C -0.142 4.142 22 C -0.244 4.244 23 C -0.085 4.085 24 O -0.051 6.051 25 C -0.009 4.009 26 C -0.168 4.168 27 C 0.016 3.984 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.090 0.910 34 H 0.085 0.915 35 H 0.099 0.901 36 H 0.125 0.875 37 H 0.090 0.910 38 H 0.177 0.823 39 H 0.173 0.827 40 H 0.225 0.775 41 H 0.089 0.911 42 H 0.110 0.890 43 H 0.101 0.899 44 H 0.085 0.915 45 H 0.053 0.947 46 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -3.955 -23.823 2.518 24.281 hybrid contribution 0.209 0.788 0.101 0.821 sum -3.746 -23.036 2.619 23.485 Atomic orbital electron populations 1.69978 1.04867 1.24893 1.57363 1.24800 0.95722 0.97643 1.02480 0.86129 0.78581 0.83587 0.77542 1.21652 1.21716 1.20725 1.19066 0.90414 0.82544 1.43414 0.90542 1.44495 1.01787 0.99972 1.87095 1.21132 0.84327 0.88511 1.00778 1.22906 0.96133 0.99364 0.99221 1.22350 0.97290 0.92105 0.99794 0.91052 1.21121 0.93561 0.94481 1.00203 1.21951 0.99757 0.93289 1.01408 1.22402 0.83337 0.96870 1.00575 1.48062 1.08876 1.21727 1.54381 1.16721 0.86057 0.80310 0.78112 1.90864 1.23709 1.66723 1.59253 1.22127 0.82946 0.97333 1.10221 1.21977 0.98490 0.95043 0.98715 1.21853 0.93057 1.01688 1.07767 1.24605 0.97061 0.88568 0.98249 1.84234 1.16501 1.42008 1.62379 1.21745 0.87991 0.90966 1.00202 1.22008 0.98791 0.94473 1.01498 1.21559 0.94306 0.86025 0.96510 0.93853 0.93851 0.94232 0.92662 0.92519 0.90962 0.91542 0.90134 0.87461 0.91020 0.82326 0.82688 0.77462 0.91059 0.88960 0.89875 0.91500 0.94682 0.96594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.48 10.31 55.49 0.57 -26.90 16 2 C -0.01 -0.30 5.49 -17.43 -0.10 -0.40 16 3 Si 0.91 22.36 29.55 -169.99 -5.02 17.34 16 4 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.23 -6.39 10.28 -15.06 -0.15 -6.55 16 8 H 0.08 2.09 7.83 -52.48 -0.41 1.68 16 9 N -0.61 -15.67 3.39 -170.03 -0.58 -16.25 16 10 C 0.18 4.32 5.37 -3.04 -0.02 4.31 16 11 C -0.14 -2.48 5.43 -24.88 -0.13 -2.62 16 12 C -0.10 -1.59 2.56 -88.46 -0.23 -1.82 16 13 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 14 C -0.07 -0.95 1.65 -90.57 -0.15 -1.10 16 15 C -0.13 -1.38 5.20 -26.61 -0.14 -1.52 16 16 C 0.09 0.89 6.33 -3.67 -0.02 0.87 16 17 N -0.60 -6.98 2.97 -174.27 -0.52 -7.49 16 18 C 0.60 7.81 7.65 -12.86 -0.10 7.71 16 19 O -0.53 -8.24 16.32 5.19 0.08 -8.15 16 20 C -0.07 -0.83 6.83 -36.80 -0.25 -1.08 16 21 C -0.12 -1.17 10.63 -39.39 -0.42 -1.59 16 22 C -0.22 -1.60 10.88 -39.89 -0.43 -2.04 16 23 C -0.02 -0.10 12.08 29.63 0.36 0.25 16 24 O -0.15 -1.43 7.13 5.00 0.04 -1.40 16 25 C 0.11 1.27 6.41 -3.72 -0.02 1.25 16 26 C -0.13 -1.56 5.21 -26.61 -0.14 -1.69 16 27 C 0.14 2.89 5.80 -2.51 -0.01 2.88 16 28 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 29 H 0.04 1.18 7.38 -51.93 -0.38 0.79 16 30 H 0.04 1.07 7.51 -51.92 -0.39 0.68 16 31 H 0.05 0.93 8.04 -51.93 -0.42 0.51 16 32 H 0.06 0.92 8.09 -51.93 -0.42 0.50 16 33 H 0.07 0.93 8.13 -51.93 -0.42 0.51 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.08 0.85 7.32 -51.92 -0.38 0.47 16 36 H 0.11 1.01 3.80 -55.04 -0.21 0.80 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.16 1.41 8.06 -52.49 -0.42 0.99 16 39 H 0.16 0.71 8.06 -52.49 -0.42 0.29 16 40 H 0.21 0.52 8.06 -52.49 -0.42 0.10 16 41 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.09 1.10 7.06 -51.93 -0.37 0.74 16 43 H 0.08 1.00 7.32 -51.93 -0.38 0.62 16 44 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.03 0.70 8.02 -51.93 -0.42 0.29 16 46 H 0.02 0.33 8.03 -51.93 -0.42 -0.09 16 LS Contribution 360.50 15.07 5.43 5.43 Total: -1.00 -33.33 360.50 -9.08 -42.41 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: -7.13 Total: -1.85 kcal Atomic # 6 Polarization: -1.17 SS G_CDS: -1.96 Total: -3.13 kcal Atomic # 7 Polarization: -50.12 SS G_CDS: -0.52 Total: -50.65 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: 0.12 Total: -9.55 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.33 -9.08 -42.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039100721.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.187 kcal (2) G-P(sol) polarization free energy of solvation -33.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.412 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds