Wall clock time and date at job start Tue Mar 31 2020 12:16:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86799 * 119.99896 * 2 1 4 4 H 1.48494 * 109.47345 * 270.00201 * 3 2 1 5 5 H 1.48506 * 109.47087 * 30.00213 * 3 2 1 6 6 H 1.48503 * 109.47344 * 149.99767 * 3 2 1 7 7 C 1.38807 * 119.99977 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99656 * 180.02562 * 7 2 1 9 9 N 1.36930 * 120.00129 * 0.02562 * 7 2 1 10 10 C 1.47022 * 125.65147 * 359.96061 * 9 7 2 11 11 C 1.54367 * 107.29082 * 181.12783 * 10 9 7 12 12 C 1.55150 * 102.92152 * 22.13770 * 11 10 9 13 13 H 1.08998 * 111.00689 * 82.64244 * 12 11 10 14 14 C 1.53004 * 111.00172 * 206.45511 * 12 11 10 15 15 C 1.53038 * 109.46077 * 296.81451 * 14 12 11 16 16 C 1.53190 * 109.34019 * 178.60078 * 15 14 12 17 17 N 1.46998 * 108.73810 * 54.62370 * 16 15 14 18 18 C 1.34774 * 120.61333 * 126.41009 * 17 16 15 19 19 O 1.21695 * 120.00244 * 173.57524 * 18 17 16 20 20 C 1.46662 * 119.99937 * 353.58118 * 18 17 16 21 21 C 1.36537 * 125.98778 * 173.15953 * 20 18 17 22 22 C 1.40367 * 106.71107 * 179.90785 * 21 20 18 23 23 C 1.35131 * 107.11109 * 0.34666 * 22 21 20 24 24 O 1.33928 * 108.76827 * 359.78550 * 23 22 21 25 25 C 1.46920 * 118.75311 * 306.41025 * 17 16 15 26 26 C 1.53046 * 109.45874 * 176.75097 * 14 12 11 27 27 C 1.47433 * 125.65013 * 179.97438 * 9 7 2 28 28 H 0.97006 * 120.00137 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.88031 * 300.51416 * 10 9 7 30 30 H 1.09008 * 109.88383 * 61.67002 * 10 9 7 31 31 H 1.09001 * 110.70585 * 263.78853 * 11 10 9 32 32 H 1.09003 * 110.75183 * 140.50813 * 11 10 9 33 33 H 1.09000 * 109.44992 * 56.78776 * 14 12 11 34 34 H 1.08997 * 109.49770 * 298.57214 * 15 14 12 35 35 H 1.09009 * 109.49162 * 58.63274 * 15 14 12 36 36 H 1.08999 * 109.58588 * 174.44329 * 16 15 14 37 37 H 1.09000 * 109.58480 * 294.86347 * 16 15 14 38 38 H 1.08001 * 126.64853 * 0.03148 * 21 20 18 39 39 H 1.07998 * 126.44384 * 180.15734 * 22 21 20 40 40 H 1.07995 * 125.61354 * 179.77957 * 23 22 21 41 41 H 1.09000 * 109.59155 * 293.81998 * 25 17 16 42 42 H 1.09000 * 109.70317 * 173.46381 * 25 17 16 43 43 H 1.09004 * 109.49413 * 301.33845 * 26 14 12 44 44 H 1.09004 * 109.49906 * 61.39626 * 26 14 12 45 45 H 1.08998 * 110.35856 * 37.00101 * 27 9 7 46 46 H 1.08994 * 110.46068 * 274.72880 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5478 1.4403 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3256 -2.3880 -0.0016 10 6 -0.1374 -2.5328 -0.0014 11 6 -0.4489 -4.0445 0.0261 12 6 0.8521 -4.6561 0.6097 13 1 0.8577 -4.5970 1.6980 14 6 1.0371 -6.1008 0.1410 15 6 -0.1122 -6.9604 0.6723 16 6 0.0568 -8.3986 0.1726 17 7 1.3941 -8.8763 0.5524 18 6 1.5426 -10.0267 1.2388 19 8 2.6559 -10.4722 1.4460 20 6 0.3624 -10.7416 1.7359 21 6 0.3598 -11.9730 2.3257 22 6 -0.9758 -12.2654 2.6434 23 6 -1.7214 -11.2163 2.2316 24 8 -0.9115 -10.3002 1.6853 25 6 2.5654 -8.0764 0.1697 26 6 2.3675 -6.6419 0.6695 27 6 1.9335 -3.7311 -0.0028 28 1 -0.4850 0.8401 -0.0004 29 1 -0.5574 -2.0522 0.8822 30 1 -0.5545 -2.0843 -0.9032 31 1 -0.6329 -4.4184 -0.9811 32 1 -1.2984 -4.2520 0.6768 33 1 1.0398 -6.1314 -0.9486 34 1 -0.1004 -6.9501 1.7622 35 1 -1.0611 -6.5601 0.3150 36 1 -0.7023 -9.0350 0.6274 37 1 -0.0454 -8.4228 -0.9123 38 1 1.2191 -12.5997 2.5135 39 1 -1.3396 -13.1618 3.1235 40 1 -2.7937 -11.1308 2.3273 41 1 2.6679 -8.0743 -0.9155 42 1 3.4629 -8.4998 0.6207 43 1 3.1837 -6.0153 0.3097 44 1 2.3563 -6.6341 1.7594 45 1 2.8334 -3.7406 0.6122 46 1 2.1673 -4.0426 -1.0208 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039100721.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:58 Heat of formation + Delta-G solvation = -8.183053 kcal Electronic energy + Delta-G solvation = -26971.986210 eV Core-core repulsion = 23249.285735 eV Total energy + Delta-G solvation = -3722.700475 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.70908 -41.12240 -39.72248 -38.03233 -35.31003 -34.11009 -33.51373 -32.42494 -30.96167 -30.73421 -29.18959 -26.96924 -25.62863 -24.47513 -23.58045 -22.71150 -21.87560 -21.68965 -21.01699 -20.54344 -18.84429 -18.74946 -17.75813 -17.32330 -16.88843 -16.78897 -16.32012 -15.94697 -15.72912 -15.30930 -15.16000 -14.71043 -14.37535 -14.35549 -14.09061 -13.92529 -13.81355 -13.73777 -13.52155 -13.40356 -13.05767 -12.89572 -12.71600 -12.31618 -12.17432 -12.11572 -11.99529 -11.80781 -11.65396 -11.44399 -11.32060 -11.06583 -11.05361 -10.90944 -10.69862 -9.91694 -9.51791 -8.87286 -7.84534 -5.19498 0.03485 1.44473 1.44691 1.46588 1.55184 1.58068 2.04258 2.13378 2.49619 3.33112 3.44570 3.62007 3.72239 3.84311 3.92625 3.97494 4.10698 4.13255 4.22405 4.29939 4.42826 4.43241 4.44430 4.59378 4.64256 4.75657 4.81790 4.84712 4.89364 4.90938 4.96858 5.02231 5.04318 5.12691 5.15389 5.17294 5.29888 5.41386 5.42154 5.46222 5.58473 5.60642 5.73058 5.81293 5.90201 6.21975 6.26678 6.89722 7.12032 7.80589 8.45058 9.25884 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.030772 B = 0.002544 C = 0.002406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.696102 B =11003.489579 C =11635.383758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.070 4.070 3 Si 0.978 3.022 4 H -0.285 1.285 5 H -0.294 1.294 6 H -0.269 1.269 7 C -0.242 4.242 8 H 0.080 0.920 9 N -0.632 5.632 10 C 0.182 3.818 11 C -0.121 4.121 12 C -0.078 4.078 13 H 0.063 0.937 14 C -0.065 4.065 15 C -0.120 4.120 16 C 0.092 3.908 17 N -0.599 5.599 18 C 0.595 3.405 19 O -0.567 6.567 20 C -0.108 4.108 21 C -0.125 4.125 22 C -0.233 4.233 23 C 0.003 3.997 24 O -0.161 6.161 25 C 0.115 3.885 26 C -0.123 4.123 27 C 0.137 3.863 28 H 0.246 0.754 29 H 0.005 0.995 30 H 0.002 0.998 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.059 0.941 35 H 0.093 0.907 36 H 0.119 0.881 37 H 0.087 0.913 38 H 0.156 0.844 39 H 0.181 0.819 40 H 0.252 0.748 41 H 0.086 0.914 42 H 0.081 0.919 43 H 0.081 0.919 44 H 0.057 0.943 45 H 0.035 0.965 46 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.573 -25.983 2.491 26.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.262 4.262 3 Si 0.806 3.194 4 H -0.212 1.212 5 H -0.220 1.220 6 H -0.194 1.194 7 C -0.371 4.371 8 H 0.098 0.902 9 N -0.358 5.358 10 C 0.057 3.943 11 C -0.159 4.159 12 C -0.097 4.097 13 H 0.082 0.918 14 C -0.084 4.084 15 C -0.158 4.158 16 C -0.029 4.029 17 N -0.330 5.330 18 C 0.384 3.616 19 O -0.449 6.449 20 C -0.159 4.159 21 C -0.146 4.146 22 C -0.252 4.252 23 C -0.065 4.065 24 O -0.057 6.057 25 C -0.007 4.007 26 C -0.162 4.162 27 C 0.012 3.988 28 H 0.055 0.945 29 H 0.023 0.977 30 H 0.020 0.980 31 H 0.093 0.907 32 H 0.098 0.902 33 H 0.099 0.901 34 H 0.078 0.922 35 H 0.111 0.889 36 H 0.136 0.864 37 H 0.105 0.895 38 H 0.174 0.826 39 H 0.199 0.801 40 H 0.268 0.732 41 H 0.104 0.896 42 H 0.100 0.900 43 H 0.099 0.901 44 H 0.075 0.925 45 H 0.053 0.947 46 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -5.078 -25.681 2.448 26.292 hybrid contribution 0.518 1.303 0.151 1.410 sum -4.560 -24.378 2.599 24.936 Atomic orbital electron populations 1.70207 1.06283 1.25153 1.58538 1.25666 0.96660 1.01062 1.02857 0.85082 0.77635 0.79149 0.77509 1.21221 1.22041 1.19422 1.19474 0.90967 0.83993 1.42654 0.90195 1.44856 1.02688 1.01318 1.86927 1.20934 0.83642 0.92547 0.97171 1.22764 0.97554 0.94438 1.01117 1.22208 0.94799 0.93723 0.99016 0.91842 1.21028 0.94723 0.91950 1.00654 1.21894 0.99325 0.93577 1.00977 1.22503 0.82711 0.96121 1.01538 1.48165 1.09559 1.21379 1.53889 1.17013 0.86298 0.80492 0.77759 1.90826 1.25337 1.67879 1.60887 1.21796 0.83298 0.98069 1.12770 1.22238 0.99885 0.94599 0.97864 1.22187 0.91791 1.03063 1.08159 1.25516 0.98417 0.87187 0.95408 1.84171 1.15937 1.42772 1.62863 1.21697 0.87835 0.90189 1.00934 1.21925 0.98437 0.94941 1.00861 1.21775 0.95364 0.84453 0.97228 0.94489 0.97692 0.97967 0.90724 0.90223 0.90097 0.92222 0.88853 0.86433 0.89497 0.82601 0.80129 0.73182 0.89561 0.90024 0.90058 0.92467 0.94679 0.95675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.57 10.31 21.65 0.22 -58.35 16 2 C -0.07 -4.07 5.49 84.86 0.47 -3.60 16 3 Si 0.98 46.68 29.55 68.60 2.03 48.71 16 4 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 5 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 6 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 7 C -0.24 -13.90 10.28 84.03 0.86 -13.04 16 8 H 0.08 4.40 7.83 -2.91 -0.02 4.38 16 9 N -0.63 -33.11 3.39 -691.85 -2.35 -35.45 16 10 C 0.18 9.09 5.37 86.74 0.47 9.56 16 11 C -0.12 -4.16 5.43 31.80 0.17 -3.99 16 12 C -0.08 -2.48 2.56 -9.40 -0.02 -2.50 16 13 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 14 C -0.06 -1.49 1.65 -10.76 -0.02 -1.51 16 15 C -0.12 -2.28 5.20 30.67 0.16 -2.12 16 16 C 0.09 1.58 6.33 86.35 0.55 2.13 16 17 N -0.60 -13.18 2.97 -823.48 -2.45 -15.62 16 18 C 0.59 15.30 7.65 86.44 0.66 15.96 16 19 O -0.57 -18.18 16.32 -4.33 -0.07 -18.25 16 20 C -0.11 -2.28 6.83 24.07 0.16 -2.11 16 21 C -0.13 -2.27 10.63 22.39 0.24 -2.03 16 22 C -0.23 -2.65 10.88 22.07 0.24 -2.41 16 23 C 0.00 0.03 12.08 67.10 0.81 0.84 16 24 O -0.16 -2.55 7.13 -5.03 -0.04 -2.58 16 25 C 0.12 2.48 6.41 86.36 0.55 3.03 16 26 C -0.12 -2.81 5.21 30.67 0.16 -2.65 16 27 C 0.14 5.48 5.80 86.86 0.50 5.98 16 28 H 0.25 14.67 8.31 -92.70 -0.77 13.90 16 29 H 0.00 0.27 7.38 -2.39 -0.02 0.26 16 30 H 0.00 0.12 7.51 -2.38 -0.02 0.10 16 31 H 0.07 2.32 8.04 -2.39 -0.02 2.30 16 32 H 0.08 2.41 8.09 -2.39 -0.02 2.39 16 33 H 0.08 1.80 8.13 -2.39 -0.02 1.78 16 34 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.09 1.59 7.32 -2.38 -0.02 1.57 16 36 H 0.12 1.86 3.80 -51.63 -0.20 1.67 16 37 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.16 2.77 8.06 -2.91 -0.02 2.75 16 39 H 0.18 1.01 8.06 -2.91 -0.02 0.99 16 40 H 0.25 -0.11 8.06 -2.91 -0.02 -0.13 16 41 H 0.09 1.60 8.14 -2.39 -0.02 1.59 16 42 H 0.08 1.96 7.06 -2.39 -0.02 1.94 16 43 H 0.08 1.87 7.32 -2.38 -0.02 1.86 16 44 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 45 H 0.03 1.40 8.02 -2.39 -0.02 1.38 16 46 H 0.03 0.98 8.03 -2.39 -0.02 0.97 16 Total: -1.00 -75.88 360.50 4.09 -71.79 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: 0.78 Total: 8.21 kcal Atomic # 6 Polarization: -4.41 SS G_CDS: 5.96 Total: 1.56 kcal Atomic # 7 Polarization: -104.85 SS G_CDS: -4.57 Total: -109.43 kcal Atomic # 8 Polarization: -20.72 SS G_CDS: -0.11 Total: -20.83 kcal Atomic # 14 Polarization: 46.68 SS G_CDS: 2.03 Total: 48.71 kcal Total: -75.88 4.09 -71.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039100721.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.604 kcal (2) G-P(sol) polarization free energy of solvation -75.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds