Wall clock time and date at job start Tue Mar 31 2020 12:28:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86805 * 119.99548 * 2 1 4 4 H 1.48505 * 109.46897 * 274.98106 * 3 2 1 5 5 H 1.48497 * 109.47206 * 34.98540 * 3 2 1 6 6 H 1.48503 * 109.46694 * 154.98679 * 3 2 1 7 7 C 1.38809 * 120.00255 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99923 * 173.17740 * 7 2 1 9 9 N 1.36937 * 120.00267 * 353.17532 * 7 2 1 10 10 C 1.47022 * 125.64450 * 6.13943 * 9 7 2 11 11 C 1.54325 * 107.27187 * 178.90000 * 10 9 7 12 12 C 1.55167 * 102.93988 * 337.81256 * 11 10 9 13 13 H 1.08993 * 110.99998 * 277.38380 * 12 11 10 14 14 C 1.53000 * 111.00184 * 153.57597 * 12 11 10 15 15 C 1.53040 * 109.46201 * 63.10849 * 14 12 11 16 16 C 1.53193 * 109.30908 * 181.38444 * 15 14 12 17 17 N 1.46927 * 108.77753 * 305.36206 * 16 15 14 18 18 C 1.34776 * 120.63159 * 233.63226 * 17 16 15 19 19 O 1.21611 * 119.99587 * 173.48613 * 18 17 16 20 20 C 1.47376 * 119.99965 * 353.48418 * 18 17 16 21 21 C 1.47029 * 127.18797 * 149.92444 * 20 18 17 22 22 C 1.34175 * 105.94842 * 180.02562 * 21 20 18 23 23 O 1.34215 * 109.13024 * 359.97438 * 22 21 20 24 24 C 1.33656 * 110.90661 * 359.72767 * 23 22 21 25 25 C 1.46922 * 118.73323 * 53.61197 * 17 16 15 26 26 C 1.53042 * 109.45673 * 183.17828 * 14 12 11 27 27 C 1.47464 * 125.63041 * 186.05395 * 9 7 2 28 28 H 0.96994 * 120.00552 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.88099 * 59.48635 * 10 9 7 30 30 H 1.08997 * 109.88368 * 298.32295 * 10 9 7 31 31 H 1.08996 * 110.72351 * 219.45039 * 11 10 9 32 32 H 1.08999 * 110.71733 * 96.17134 * 11 10 9 33 33 H 1.09003 * 109.44749 * 303.13732 * 14 12 11 34 34 H 1.08997 * 109.49612 * 301.33258 * 15 14 12 35 35 H 1.09001 * 109.49400 * 61.43350 * 15 14 12 36 36 H 1.09001 * 109.58211 * 185.57473 * 16 15 14 37 37 H 1.09004 * 109.70683 * 65.22314 * 16 15 14 38 38 H 1.07992 * 127.02061 * 0.02562 * 21 20 18 39 39 H 1.08008 * 125.43414 * 180.02562 * 22 21 20 40 40 H 1.07991 * 125.80513 * 180.28722 * 24 23 22 41 41 H 1.09008 * 109.58433 * 186.60441 * 25 17 16 42 42 H 1.09000 * 109.70753 * 66.25446 * 25 17 16 43 43 H 1.09004 * 109.49446 * 298.56296 * 26 14 12 44 44 H 1.09001 * 109.49853 * 58.66349 * 26 14 12 45 45 H 1.09005 * 110.34552 * 85.32623 * 27 9 7 46 46 H 1.08994 * 110.40758 * 322.99599 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.3922 2.1073 -1.3948 5 1 1.5041 2.6200 0.8027 6 1 3.5964 1.4122 0.5920 7 6 2.0103 -1.2021 0.0005 8 1 3.0846 -1.2054 -0.1106 9 7 1.3330 -2.3838 0.1420 10 6 -0.1291 -2.5348 0.1739 11 6 -0.4311 -4.0411 0.3201 12 6 0.8671 -4.7084 -0.2061 13 1 0.8604 -4.7717 -1.2942 14 6 1.0657 -6.0905 0.4194 15 6 -0.0852 -7.0090 0.0025 16 6 0.0986 -8.3812 0.6584 17 7 1.4330 -8.8932 0.3178 18 6 1.5795 -10.1126 -0.2373 19 8 2.6735 -10.4774 -0.6232 20 6 0.4140 -11.0038 -0.3765 21 6 0.1904 -12.0185 -1.4167 22 6 -0.9978 -12.5762 -1.1383 23 8 -1.5073 -11.9999 -0.0385 24 6 -0.6798 -11.0639 0.4364 25 6 2.6045 -8.0504 0.5934 26 6 2.3927 -6.6820 -0.0617 27 6 1.9497 -3.7156 0.2857 28 1 -0.4851 0.8399 0.0004 29 1 -0.5610 -2.1585 -0.7534 30 1 -0.5396 -1.9902 1.0242 31 1 -1.2863 -4.3244 -0.2935 32 1 -0.6018 -4.3006 1.3649 33 1 1.0817 -5.9985 1.5054 34 1 -1.0318 -6.5755 0.3251 35 1 -0.0866 -7.1213 -1.0818 36 1 -0.6620 -9.0682 0.2876 37 1 0.0089 -8.2863 1.7406 38 1 0.8481 -12.2645 -2.2372 39 1 -1.4686 -13.3639 -1.7079 40 1 -0.8497 -10.4562 1.3128 41 1 3.4974 -8.5193 0.1797 42 1 2.7226 -7.9259 1.6698 43 1 2.3679 -6.7973 -1.1454 44 1 3.2097 -6.0157 0.2152 45 1 2.1953 -3.9088 1.3300 46 1 2.8426 -3.7898 -0.3349 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039110464.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:04 Heat of formation + Delta-G solvation = 6.973751 kcal Electronic energy + Delta-G solvation = -26824.423195 eV Core-core repulsion = 23102.379968 eV Total energy + Delta-G solvation = -3722.043227 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.91762 -40.22668 -38.35800 -36.61399 -33.93939 -33.17295 -31.84784 -31.41762 -29.95717 -29.16602 -27.76513 -25.53474 -24.35735 -23.41775 -22.75934 -21.78880 -20.85043 -19.90866 -19.72218 -19.43472 -17.88363 -16.94250 -16.78890 -16.41967 -16.05100 -15.30173 -14.97409 -14.84845 -14.42413 -14.17688 -13.98262 -13.86181 -13.46559 -13.32370 -13.19070 -12.83531 -12.57959 -12.38113 -12.20350 -11.99592 -11.75160 -11.37327 -11.04852 -11.02291 -10.89067 -10.69235 -10.54897 -10.26709 -10.09126 -10.06139 -9.84662 -9.78729 -9.70670 -9.56736 -9.10607 -8.77048 -8.54822 -6.78332 -5.69827 -3.01622 1.06222 1.76594 2.52150 2.74694 3.03853 3.41006 3.46560 3.48646 4.17425 4.30436 4.51476 4.59101 4.60039 4.80084 4.83217 4.98191 5.08457 5.15128 5.25886 5.31189 5.39484 5.49135 5.52508 5.59388 5.60507 5.67097 5.69977 5.82562 5.89845 5.92986 5.99309 6.03089 6.15628 6.20311 6.34315 6.43057 6.47317 6.58553 6.59772 6.63053 6.79400 7.02771 7.19408 7.59268 7.67663 7.85401 7.97960 8.29725 9.25292 9.86282 10.53445 11.42404 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.032116 B = 0.002466 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.639834 B =11351.820573 C =11930.593624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.009 4.009 3 Si 0.909 3.091 4 H -0.290 1.290 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.227 4.227 8 H 0.077 0.923 9 N -0.607 5.607 10 C 0.177 3.823 11 C -0.138 4.138 12 C -0.097 4.097 13 H 0.071 0.929 14 C -0.073 4.073 15 C -0.128 4.128 16 C 0.091 3.909 17 N -0.604 5.604 18 C 0.587 3.413 19 O -0.539 6.539 20 C -0.229 4.229 21 C -0.168 4.168 22 C -0.039 4.039 23 O -0.175 6.175 24 C 0.012 3.988 25 C 0.113 3.887 26 C -0.129 4.129 27 C 0.142 3.858 28 H 0.251 0.749 29 H 0.039 0.961 30 H 0.043 0.957 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.066 0.934 36 H 0.089 0.911 37 H 0.072 0.928 38 H 0.158 0.842 39 H 0.209 0.791 40 H 0.216 0.784 41 H 0.091 0.909 42 H 0.069 0.931 43 H 0.066 0.934 44 H 0.081 0.919 45 H 0.017 0.983 46 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.140 -24.358 1.312 24.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.205 4.205 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.356 4.356 8 H 0.094 0.906 9 N -0.334 5.334 10 C 0.052 3.948 11 C -0.176 4.176 12 C -0.116 4.116 13 H 0.089 0.911 14 C -0.092 4.092 15 C -0.166 4.166 16 C -0.031 4.031 17 N -0.338 5.338 18 C 0.376 3.624 19 O -0.417 6.417 20 C -0.234 4.234 21 C -0.188 4.188 22 C -0.105 4.105 23 O -0.070 6.070 24 C -0.057 4.057 25 C -0.009 4.009 26 C -0.167 4.167 27 C 0.016 3.984 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.090 0.910 34 H 0.099 0.901 35 H 0.085 0.915 36 H 0.107 0.893 37 H 0.091 0.909 38 H 0.176 0.824 39 H 0.226 0.774 40 H 0.232 0.768 41 H 0.110 0.890 42 H 0.087 0.913 43 H 0.085 0.915 44 H 0.100 0.900 45 H 0.035 0.965 46 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -3.867 -24.381 1.224 24.716 hybrid contribution 0.533 1.091 -0.149 1.223 sum -3.334 -23.290 1.075 23.552 Atomic orbital electron populations 1.69982 1.04916 1.24936 1.57034 1.24815 0.95690 0.97639 1.02355 0.86146 0.78735 0.83741 0.77460 1.21725 1.21657 1.20648 1.19061 0.91064 0.82684 1.42759 0.90554 1.44504 1.01725 1.01201 1.85927 1.21134 0.84432 0.88629 1.00623 1.22896 0.96133 0.99166 0.99399 1.22355 0.97285 0.92435 0.99526 0.91089 1.21099 0.93566 0.94283 1.00297 1.21965 0.99797 0.93717 1.01117 1.22222 0.83883 0.96819 1.00189 1.47981 1.08282 1.15827 1.61677 1.17328 0.87282 0.80753 0.77070 1.90778 1.26962 1.74862 1.49100 1.21524 0.97626 1.03360 1.00841 1.22786 0.97892 0.97187 1.00934 1.23961 0.95672 1.01259 0.89598 1.83816 1.44070 1.42206 1.36917 1.24723 0.88737 0.92292 0.99996 1.21688 0.88311 0.90715 1.00170 1.21992 0.98646 0.95118 1.00985 1.21558 0.94203 0.85805 0.96799 0.93842 0.94240 0.93909 0.92542 0.92631 0.90966 0.90099 0.91477 0.89298 0.90933 0.82409 0.77449 0.76778 0.89038 0.91252 0.91536 0.90041 0.96534 0.94716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.34 10.36 55.49 0.58 -26.77 16 2 C -0.01 -0.25 5.48 -17.43 -0.10 -0.35 16 3 Si 0.91 22.29 29.56 -169.99 -5.02 17.26 16 4 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.23 -6.42 10.26 -15.06 -0.15 -6.57 16 8 H 0.08 2.08 7.84 -52.48 -0.41 1.67 16 9 N -0.61 -15.61 3.40 -170.04 -0.58 -16.19 16 10 C 0.18 4.28 5.38 -3.06 -0.02 4.26 16 11 C -0.14 -2.44 5.42 -24.89 -0.13 -2.58 16 12 C -0.10 -1.58 2.56 -88.47 -0.23 -1.81 16 13 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 14 C -0.07 -0.91 1.65 -90.58 -0.15 -1.06 16 15 C -0.13 -1.31 5.20 -26.61 -0.14 -1.45 16 16 C 0.09 0.77 5.25 -3.71 -0.02 0.75 16 17 N -0.60 -6.60 2.97 -174.05 -0.52 -7.11 16 18 C 0.59 7.52 7.64 -12.54 -0.10 7.42 16 19 O -0.54 -8.86 16.50 5.27 0.09 -8.77 16 20 C -0.23 -2.38 5.70 -103.27 -0.59 -2.97 16 21 C -0.17 -1.54 11.12 -37.45 -0.42 -1.95 16 22 C -0.04 -0.26 12.03 29.30 0.35 0.09 16 23 O -0.17 -1.36 10.52 7.64 0.08 -1.28 16 24 C 0.01 0.09 9.72 30.08 0.29 0.39 16 25 C 0.11 1.26 6.44 -3.71 -0.02 1.23 16 26 C -0.13 -1.54 5.21 -26.61 -0.14 -1.68 16 27 C 0.14 2.88 5.80 -2.51 -0.01 2.87 16 28 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 29 H 0.04 1.06 7.55 -51.93 -0.39 0.67 16 30 H 0.04 1.15 7.37 -51.93 -0.38 0.77 16 31 H 0.06 0.90 8.09 -51.93 -0.42 0.48 16 32 H 0.05 0.92 8.04 -51.93 -0.42 0.50 16 33 H 0.07 0.89 8.13 -51.93 -0.42 0.47 16 34 H 0.08 0.78 7.32 -51.93 -0.38 0.40 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.09 0.63 4.31 -51.93 -0.22 0.40 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.16 1.34 8.06 -52.49 -0.42 0.91 16 39 H 0.21 0.58 8.06 -52.48 -0.42 0.16 16 40 H 0.22 0.98 6.52 -52.49 -0.34 0.63 16 41 H 0.09 1.13 7.00 -51.92 -0.36 0.76 16 42 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.08 0.99 7.32 -51.93 -0.38 0.61 16 45 H 0.02 0.34 8.03 -51.93 -0.42 -0.08 16 46 H 0.03 0.70 8.02 -51.93 -0.42 0.28 16 LS Contribution 360.18 15.07 5.43 5.43 Total: -1.00 -34.57 360.18 -8.58 -43.15 By element: Atomic # 1 Polarization: 4.75 SS G_CDS: -7.06 Total: -2.32 kcal Atomic # 6 Polarization: -1.83 SS G_CDS: -1.57 Total: -3.40 kcal Atomic # 7 Polarization: -49.55 SS G_CDS: -0.52 Total: -50.07 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: 0.17 Total: -10.05 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -34.57 -8.58 -43.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039110464.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.126 kcal (2) G-P(sol) polarization free energy of solvation -34.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.152 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds