Wall clock time and date at job start Tue Mar 31 2020 12:28:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86805 * 119.99548 * 2 1 4 4 H 1.48505 * 109.46897 * 274.98106 * 3 2 1 5 5 H 1.48497 * 109.47206 * 34.98540 * 3 2 1 6 6 H 1.48503 * 109.46694 * 154.98679 * 3 2 1 7 7 C 1.38809 * 120.00255 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99923 * 173.17740 * 7 2 1 9 9 N 1.36937 * 120.00267 * 353.17532 * 7 2 1 10 10 C 1.47022 * 125.64450 * 6.13943 * 9 7 2 11 11 C 1.54325 * 107.27187 * 178.90000 * 10 9 7 12 12 C 1.55167 * 102.93988 * 337.81256 * 11 10 9 13 13 H 1.08993 * 110.99998 * 277.38380 * 12 11 10 14 14 C 1.53000 * 111.00184 * 153.57597 * 12 11 10 15 15 C 1.53040 * 109.46201 * 63.10849 * 14 12 11 16 16 C 1.53193 * 109.30908 * 181.38444 * 15 14 12 17 17 N 1.46927 * 108.77753 * 305.36206 * 16 15 14 18 18 C 1.34776 * 120.63159 * 233.63226 * 17 16 15 19 19 O 1.21611 * 119.99587 * 173.48613 * 18 17 16 20 20 C 1.47376 * 119.99965 * 353.48418 * 18 17 16 21 21 C 1.47029 * 127.18797 * 149.92444 * 20 18 17 22 22 C 1.34175 * 105.94842 * 180.02562 * 21 20 18 23 23 O 1.34215 * 109.13024 * 359.97438 * 22 21 20 24 24 C 1.33656 * 110.90661 * 359.72767 * 23 22 21 25 25 C 1.46922 * 118.73323 * 53.61197 * 17 16 15 26 26 C 1.53042 * 109.45673 * 183.17828 * 14 12 11 27 27 C 1.47464 * 125.63041 * 186.05395 * 9 7 2 28 28 H 0.96994 * 120.00552 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.88099 * 59.48635 * 10 9 7 30 30 H 1.08997 * 109.88368 * 298.32295 * 10 9 7 31 31 H 1.08996 * 110.72351 * 219.45039 * 11 10 9 32 32 H 1.08999 * 110.71733 * 96.17134 * 11 10 9 33 33 H 1.09003 * 109.44749 * 303.13732 * 14 12 11 34 34 H 1.08997 * 109.49612 * 301.33258 * 15 14 12 35 35 H 1.09001 * 109.49400 * 61.43350 * 15 14 12 36 36 H 1.09001 * 109.58211 * 185.57473 * 16 15 14 37 37 H 1.09004 * 109.70683 * 65.22314 * 16 15 14 38 38 H 1.07992 * 127.02061 * 0.02562 * 21 20 18 39 39 H 1.08008 * 125.43414 * 180.02562 * 22 21 20 40 40 H 1.07991 * 125.80513 * 180.28722 * 24 23 22 41 41 H 1.09008 * 109.58433 * 186.60441 * 25 17 16 42 42 H 1.09000 * 109.70753 * 66.25446 * 25 17 16 43 43 H 1.09004 * 109.49446 * 298.56296 * 26 14 12 44 44 H 1.09001 * 109.49853 * 58.66349 * 26 14 12 45 45 H 1.09005 * 110.34552 * 85.32623 * 27 9 7 46 46 H 1.08994 * 110.40758 * 322.99599 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.3922 2.1073 -1.3948 5 1 1.5041 2.6200 0.8027 6 1 3.5964 1.4122 0.5920 7 6 2.0103 -1.2021 0.0005 8 1 3.0846 -1.2054 -0.1106 9 7 1.3330 -2.3838 0.1420 10 6 -0.1291 -2.5348 0.1739 11 6 -0.4311 -4.0411 0.3201 12 6 0.8671 -4.7084 -0.2061 13 1 0.8604 -4.7717 -1.2942 14 6 1.0657 -6.0905 0.4194 15 6 -0.0852 -7.0090 0.0025 16 6 0.0986 -8.3812 0.6584 17 7 1.4330 -8.8932 0.3178 18 6 1.5795 -10.1126 -0.2373 19 8 2.6735 -10.4774 -0.6232 20 6 0.4140 -11.0038 -0.3765 21 6 0.1904 -12.0185 -1.4167 22 6 -0.9978 -12.5762 -1.1383 23 8 -1.5073 -11.9999 -0.0385 24 6 -0.6798 -11.0639 0.4364 25 6 2.6045 -8.0504 0.5934 26 6 2.3927 -6.6820 -0.0617 27 6 1.9497 -3.7156 0.2857 28 1 -0.4851 0.8399 0.0004 29 1 -0.5610 -2.1585 -0.7534 30 1 -0.5396 -1.9902 1.0242 31 1 -1.2863 -4.3244 -0.2935 32 1 -0.6018 -4.3006 1.3649 33 1 1.0817 -5.9985 1.5054 34 1 -1.0318 -6.5755 0.3251 35 1 -0.0866 -7.1213 -1.0818 36 1 -0.6620 -9.0682 0.2876 37 1 0.0089 -8.2863 1.7406 38 1 0.8481 -12.2645 -2.2372 39 1 -1.4686 -13.3639 -1.7079 40 1 -0.8497 -10.4562 1.3128 41 1 3.4974 -8.5193 0.1797 42 1 2.7226 -7.9259 1.6698 43 1 2.3679 -6.7973 -1.1454 44 1 3.2097 -6.0157 0.2152 45 1 2.1953 -3.9088 1.3300 46 1 2.8426 -3.7898 -0.3349 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039110464.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:03 Heat of formation + Delta-G solvation = -14.616317 kcal Electronic energy + Delta-G solvation = -26825.359410 eV Core-core repulsion = 23102.379968 eV Total energy + Delta-G solvation = -3722.979442 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.50994 -41.15148 -39.67188 -37.92621 -35.30090 -34.10910 -33.32263 -32.30447 -30.90956 -30.63792 -29.21303 -27.02259 -25.73767 -24.43453 -23.70547 -22.41069 -21.81257 -21.68037 -20.90801 -20.38257 -18.83684 -18.60199 -17.72285 -17.05609 -16.85380 -16.78135 -16.35122 -15.97254 -15.72732 -15.49043 -15.12146 -14.79861 -14.42353 -14.34507 -14.12744 -13.84975 -13.83289 -13.77512 -13.46885 -13.26461 -13.15193 -12.87170 -12.75748 -12.28873 -12.23491 -12.15090 -12.01888 -11.81316 -11.61172 -11.33153 -11.23964 -11.04766 -11.02507 -10.74588 -10.67936 -9.75301 -9.59787 -8.86650 -7.86260 -5.20001 0.41181 1.14888 1.44259 1.45769 1.55413 1.81654 2.10093 2.23942 2.49248 3.31720 3.47935 3.62786 3.72772 3.78275 3.83626 3.93829 3.98733 4.14294 4.25055 4.29880 4.42711 4.45032 4.46365 4.56069 4.62883 4.74315 4.75442 4.79964 4.85636 4.91309 4.97020 5.01157 5.04363 5.08411 5.13572 5.19240 5.31421 5.34117 5.43235 5.45950 5.57884 5.61229 5.74231 5.80392 6.01999 6.21777 6.35317 7.08402 7.11614 7.80280 8.45050 9.24677 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.032116 B = 0.002466 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.639834 B =11351.820573 C =11930.593624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.068 4.068 3 Si 0.976 3.024 4 H -0.288 1.288 5 H -0.292 1.292 6 H -0.268 1.268 7 C -0.243 4.243 8 H 0.079 0.921 9 N -0.632 5.632 10 C 0.181 3.819 11 C -0.119 4.119 12 C -0.080 4.080 13 H 0.059 0.941 14 C -0.063 4.063 15 C -0.125 4.125 16 C 0.091 3.909 17 N -0.602 5.602 18 C 0.582 3.418 19 O -0.591 6.591 20 C -0.266 4.266 21 C -0.203 4.203 22 C -0.019 4.019 23 O -0.176 6.176 24 C 0.035 3.965 25 C 0.116 3.884 26 C -0.124 4.124 27 C 0.137 3.863 28 H 0.246 0.754 29 H -0.001 1.001 30 H 0.006 0.994 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.085 0.915 34 H 0.097 0.903 35 H 0.054 0.946 36 H 0.107 0.893 37 H 0.103 0.897 38 H 0.151 0.849 39 H 0.247 0.753 40 H 0.248 0.752 41 H 0.073 0.927 42 H 0.090 0.910 43 H 0.050 0.950 44 H 0.077 0.923 45 H 0.027 0.973 46 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.395 -26.179 2.647 26.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.261 4.261 3 Si 0.804 3.196 4 H -0.215 1.215 5 H -0.219 1.219 6 H -0.193 1.193 7 C -0.373 4.373 8 H 0.097 0.903 9 N -0.358 5.358 10 C 0.056 3.944 11 C -0.157 4.157 12 C -0.099 4.099 13 H 0.078 0.922 14 C -0.082 4.082 15 C -0.163 4.163 16 C -0.030 4.030 17 N -0.333 5.333 18 C 0.372 3.628 19 O -0.473 6.473 20 C -0.270 4.270 21 C -0.223 4.223 22 C -0.084 4.084 23 O -0.070 6.070 24 C -0.035 4.035 25 C -0.006 4.006 26 C -0.162 4.162 27 C 0.012 3.988 28 H 0.056 0.944 29 H 0.018 0.982 30 H 0.025 0.975 31 H 0.097 0.903 32 H 0.096 0.904 33 H 0.104 0.896 34 H 0.115 0.885 35 H 0.073 0.927 36 H 0.125 0.875 37 H 0.121 0.879 38 H 0.169 0.831 39 H 0.263 0.737 40 H 0.264 0.736 41 H 0.092 0.908 42 H 0.109 0.891 43 H 0.069 0.931 44 H 0.095 0.905 45 H 0.045 0.955 46 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -5.128 -26.221 2.571 26.841 hybrid contribution 0.936 1.651 -0.595 1.989 sum -4.192 -24.571 1.975 25.004 Atomic orbital electron populations 1.70204 1.06307 1.25216 1.58211 1.25669 0.96622 1.01028 1.02732 0.85101 0.77872 0.79333 0.77286 1.21484 1.21852 1.19318 1.19456 0.91540 0.84177 1.42092 0.90331 1.44868 1.02686 1.02504 1.85763 1.20947 0.83666 0.92758 0.97051 1.22753 0.97469 0.94113 1.01408 1.22222 0.94844 0.93804 0.99025 0.92224 1.21014 0.94579 0.91984 1.00602 1.21937 0.99345 0.94339 1.00642 1.22445 0.82830 0.95775 1.01914 1.48079 1.09219 1.15220 1.60814 1.17747 0.87340 0.81385 0.76281 1.90741 1.29008 1.76062 1.51465 1.21504 0.98126 1.04472 1.02901 1.22944 0.99376 0.98390 1.01566 1.24595 0.94526 1.00650 0.88660 1.83864 1.43988 1.42085 1.37086 1.25212 0.87185 0.91433 0.99629 1.21623 0.88105 0.89805 1.01087 1.21906 0.98532 0.95661 1.00097 1.21779 0.95211 0.84443 0.97361 0.94438 0.98240 0.97534 0.90256 0.90380 0.89621 0.88493 0.92717 0.87517 0.87861 0.83080 0.73721 0.73586 0.90849 0.89150 0.93112 0.90470 0.95490 0.94979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.28 10.36 21.65 0.22 -58.05 16 2 C -0.07 -3.94 5.48 84.86 0.47 -3.47 16 3 Si 0.98 46.57 29.56 68.60 2.03 48.60 16 4 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16 5 H -0.29 -13.91 7.11 99.48 0.71 -13.21 16 6 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 7 C -0.24 -14.01 10.26 84.03 0.86 -13.14 16 8 H 0.08 4.34 7.84 -2.91 -0.02 4.32 16 9 N -0.63 -33.02 3.40 -691.89 -2.35 -35.37 16 10 C 0.18 8.96 5.38 86.73 0.47 9.43 16 11 C -0.12 -4.02 5.42 31.79 0.17 -3.85 16 12 C -0.08 -2.49 2.56 -9.40 -0.02 -2.51 16 13 H 0.06 2.01 8.14 -2.39 -0.02 2.00 16 14 C -0.06 -1.38 1.65 -10.77 -0.02 -1.39 16 15 C -0.12 -2.12 5.20 30.67 0.16 -1.96 16 16 C 0.09 1.17 5.25 86.36 0.45 1.63 16 17 N -0.60 -11.94 2.97 -822.83 -2.45 -14.39 16 18 C 0.58 14.58 7.64 86.65 0.66 15.24 16 19 O -0.59 -20.09 16.50 -4.06 -0.07 -20.15 16 20 C -0.27 -5.12 5.70 -18.99 -0.11 -5.23 16 21 C -0.20 -3.52 11.12 23.65 0.26 -3.25 16 22 C -0.02 -0.20 12.03 66.89 0.80 0.60 16 23 O -0.18 -2.09 10.52 4.43 0.05 -2.05 16 24 C 0.04 0.42 9.72 67.39 0.66 1.07 16 25 C 0.12 2.42 6.44 86.36 0.56 2.97 16 26 C -0.12 -2.80 5.21 30.67 0.16 -2.64 16 27 C 0.14 5.47 5.80 86.85 0.50 5.97 16 28 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 29 H 0.00 -0.04 7.55 -2.39 -0.02 -0.06 16 30 H 0.01 0.36 7.37 -2.39 -0.02 0.34 16 31 H 0.08 2.34 8.09 -2.39 -0.02 2.32 16 32 H 0.08 2.32 8.04 -2.39 -0.02 2.30 16 33 H 0.09 1.74 8.13 -2.39 -0.02 1.72 16 34 H 0.10 1.41 7.32 -2.39 -0.02 1.39 16 35 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.11 1.03 4.31 -2.39 -0.01 1.02 16 37 H 0.10 0.80 8.14 -2.38 -0.02 0.78 16 38 H 0.15 2.66 8.06 -2.91 -0.02 2.64 16 39 H 0.25 0.44 8.06 -2.91 -0.02 0.42 16 40 H 0.25 0.99 6.52 -2.91 -0.02 0.98 16 41 H 0.07 1.83 7.00 -2.38 -0.02 1.81 16 42 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 43 H 0.05 1.30 8.14 -2.38 -0.02 1.29 16 44 H 0.08 1.81 7.32 -2.39 -0.02 1.79 16 45 H 0.03 1.05 8.03 -2.38 -0.02 1.03 16 46 H 0.03 1.28 8.02 -2.39 -0.02 1.26 16 Total: -1.00 -80.06 360.18 4.44 -75.62 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: 0.97 Total: 6.34 kcal Atomic # 6 Polarization: -6.57 SS G_CDS: 6.03 Total: -0.54 kcal Atomic # 7 Polarization: -103.24 SS G_CDS: -4.57 Total: -107.81 kcal Atomic # 8 Polarization: -22.18 SS G_CDS: -0.02 Total: -22.20 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 2.03 Total: 48.60 kcal Total: -80.06 4.44 -75.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039110464.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.000 kcal (2) G-P(sol) polarization free energy of solvation -80.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds