Wall clock time and date at job start Tue Mar 31 2020 12:28:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86799 * 119.99831 * 2 1 4 4 H 1.48506 * 109.46745 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.46877 * 299.99736 * 3 2 1 6 6 H 1.48495 * 109.47144 * 60.00199 * 3 2 1 7 7 C 1.38812 * 119.99728 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99828 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00216 * 0.02562 * 7 2 1 10 10 C 1.47022 * 125.65163 * 0.03617 * 9 7 2 11 11 C 1.54365 * 107.29108 * 181.06046 * 10 9 7 12 12 C 1.55157 * 102.92352 * 22.13625 * 11 10 9 13 13 H 1.09006 * 111.00333 * 82.63959 * 12 11 10 14 14 C 1.52995 * 111.00660 * 206.45419 * 12 11 10 15 15 C 1.53040 * 109.46151 * 296.82169 * 14 12 11 16 16 C 1.53191 * 109.31228 * 178.61438 * 15 14 12 17 17 N 1.46922 * 108.77612 * 54.63581 * 16 15 14 18 18 C 1.34781 * 120.63265 * 126.36865 * 17 16 15 19 19 O 1.21609 * 119.99756 * 3.69413 * 18 17 16 20 20 C 1.47375 * 120.00064 * 183.69133 * 18 17 16 21 21 C 1.47023 * 127.19326 * 318.54614 * 20 18 17 22 22 C 1.34179 * 105.95291 * 179.97438 * 21 20 18 23 23 O 1.34211 * 109.12693 * 359.97438 * 22 21 20 24 24 C 1.33651 * 110.90914 * 0.02562 * 23 22 21 25 25 C 1.46930 * 118.73882 * 306.64034 * 17 16 15 26 26 C 1.52755 * 109.00660 * 53.31040 * 25 17 16 27 27 C 1.47424 * 125.65010 * 179.97438 * 9 7 2 28 28 H 0.96996 * 120.00238 * 359.97438 * 1 2 3 29 29 H 1.09005 * 109.88230 * 300.44284 * 10 9 7 30 30 H 1.09002 * 109.88231 * 61.45071 * 10 9 7 31 31 H 1.08994 * 110.70610 * 263.79247 * 11 10 9 32 32 H 1.09000 * 110.75761 * 140.50738 * 11 10 9 33 33 H 1.09006 * 109.44940 * 56.78428 * 14 12 11 34 34 H 1.09002 * 109.49665 * 58.65956 * 15 14 12 35 35 H 1.09004 * 109.49500 * 298.56495 * 15 14 12 36 36 H 1.08992 * 109.58886 * 294.84545 * 16 15 14 37 37 H 1.09007 * 109.69964 * 174.48899 * 16 15 14 38 38 H 1.08002 * 127.02128 * 0.22133 * 21 20 18 39 39 H 1.08003 * 125.43556 * 180.02562 * 22 21 20 40 40 H 1.08000 * 125.80832 * 179.97438 * 24 23 22 41 41 H 1.08994 * 109.58711 * 173.14745 * 25 17 16 42 42 H 1.09000 * 109.58211 * 293.57393 * 25 17 16 43 43 H 1.09002 * 109.56535 * 185.55292 * 26 25 17 44 44 H 1.08998 * 109.38757 * 65.51530 * 26 25 17 45 45 H 1.09007 * 110.36202 * 37.06808 * 27 9 7 46 46 H 1.08997 * 110.46460 * 274.79392 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3963 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.1376 -2.5328 -0.0008 11 6 -0.4491 -4.0445 0.0271 12 6 0.8513 -4.6560 0.6122 13 1 0.8558 -4.5964 1.7006 14 6 1.0367 -6.1008 0.1443 15 6 -0.1132 -6.9601 0.6747 16 6 0.0572 -8.3984 0.1757 17 7 1.3932 -8.8762 0.5571 18 6 1.5409 -10.0261 1.2445 19 8 0.5695 -10.7129 1.4965 20 6 2.8797 -10.4511 1.6906 21 6 4.1359 -10.3739 0.9305 22 6 5.0858 -10.8724 1.7365 23 8 4.5270 -11.2393 2.9003 24 6 3.2126 -10.9975 2.8955 25 6 2.5647 -8.0736 0.1802 26 6 2.3667 -6.6418 0.6743 27 6 1.9333 -3.7312 0.0005 28 1 -0.4850 0.8400 0.0004 29 1 -0.5585 -2.0520 0.8824 30 1 -0.5539 -2.0823 -0.9018 31 1 -0.6320 -4.4188 -0.9801 32 1 -1.2992 -4.2518 0.6770 33 1 1.0405 -6.1318 -0.9453 34 1 -1.0616 -6.5604 0.3158 35 1 -0.1025 -6.9495 1.7646 36 1 -0.0438 -8.4232 -0.9093 37 1 -0.7020 -9.0367 0.6280 38 1 4.2678 -9.9901 -0.0703 39 1 6.1330 -10.9632 1.4885 40 1 2.5298 -11.2004 3.7073 41 1 3.4594 -8.4960 0.6374 42 1 2.6724 -8.0712 -0.9045 43 1 3.1832 -6.0154 0.3152 44 1 2.3542 -6.6336 1.7642 45 1 2.8326 -3.7405 0.6165 46 1 2.1682 -4.0432 -1.0171 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039110465.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:07 Heat of formation + Delta-G solvation = 4.490199 kcal Electronic energy + Delta-G solvation = -26872.100841 eV Core-core repulsion = 23149.949920 eV Total energy + Delta-G solvation = -3722.150921 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.87660 -40.19957 -38.36408 -36.60712 -33.97660 -33.17625 -31.70925 -31.16062 -30.12709 -29.16902 -27.74125 -25.58020 -24.16169 -23.62587 -22.69966 -21.82026 -20.73931 -19.87403 -19.56850 -19.41234 -17.96412 -16.93238 -16.75593 -16.32526 -16.05632 -15.28548 -14.92871 -14.83144 -14.44732 -14.23702 -13.99301 -13.85522 -13.46697 -13.35816 -13.21297 -12.70708 -12.56457 -12.34645 -12.17846 -11.99450 -11.73193 -11.34513 -11.06811 -10.98519 -10.86458 -10.70887 -10.52977 -10.28439 -10.06677 -10.02454 -9.80261 -9.77061 -9.62638 -9.56873 -9.14086 -8.73097 -8.57791 -6.79082 -5.68740 -3.01802 1.20334 1.73787 2.57060 2.73184 3.00782 3.40267 3.45458 3.48140 4.19582 4.40482 4.51072 4.65230 4.71416 4.83659 4.86404 5.00695 5.08945 5.19492 5.27672 5.36899 5.43998 5.50707 5.53941 5.64118 5.68679 5.70930 5.72842 5.85682 5.88870 5.91020 5.97232 6.04680 6.18503 6.21352 6.35900 6.44902 6.47571 6.59542 6.63652 6.64688 6.79900 7.02930 7.23185 7.59711 7.68095 7.86428 7.98191 8.29682 9.25287 9.86129 10.52949 11.43020 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.022627 B = 0.002651 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.182406 B =10558.910875 C =11463.642886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.010 4.010 3 Si 0.910 3.090 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.226 4.226 8 H 0.077 0.923 9 N -0.607 5.607 10 C 0.177 3.823 11 C -0.138 4.138 12 C -0.096 4.096 13 H 0.071 0.929 14 C -0.074 4.074 15 C -0.127 4.127 16 C 0.112 3.888 17 N -0.599 5.599 18 C 0.589 3.411 19 O -0.546 6.546 20 C -0.235 4.235 21 C -0.194 4.194 22 C -0.033 4.033 23 O -0.176 6.176 24 C 0.038 3.962 25 C 0.095 3.905 26 C -0.130 4.130 27 C 0.143 3.857 28 H 0.251 0.749 29 H 0.043 0.957 30 H 0.040 0.960 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.065 0.935 36 H 0.068 0.932 37 H 0.090 0.910 38 H 0.161 0.839 39 H 0.208 0.792 40 H 0.214 0.786 41 H 0.096 0.904 42 H 0.069 0.931 43 H 0.081 0.919 44 H 0.065 0.935 45 H 0.034 0.966 46 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.971 -22.301 2.095 23.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.206 4.206 3 Si 0.741 3.259 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.355 4.355 8 H 0.095 0.905 9 N -0.334 5.334 10 C 0.052 3.948 11 C -0.176 4.176 12 C -0.115 4.115 13 H 0.089 0.911 14 C -0.093 4.093 15 C -0.165 4.165 16 C -0.010 4.010 17 N -0.331 5.331 18 C 0.378 3.622 19 O -0.425 6.425 20 C -0.239 4.239 21 C -0.213 4.213 22 C -0.100 4.100 23 O -0.071 6.071 24 C -0.032 4.032 25 C -0.027 4.027 26 C -0.168 4.168 27 C 0.017 3.983 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.090 0.910 34 H 0.098 0.902 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.109 0.891 38 H 0.178 0.822 39 H 0.225 0.775 40 H 0.230 0.770 41 H 0.114 0.886 42 H 0.087 0.913 43 H 0.099 0.901 44 H 0.084 0.916 45 H 0.052 0.948 46 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges 6.571 -22.532 2.438 23.597 hybrid contribution 0.377 1.201 -0.292 1.292 sum 6.948 -21.331 2.146 22.537 Atomic orbital electron populations 1.69985 1.04872 1.24800 1.57343 1.24805 0.95717 0.97650 1.02467 0.86059 0.78700 0.83893 0.77222 1.20532 1.21799 1.21798 1.19106 0.90421 0.82537 1.43401 0.90501 1.44503 1.01800 0.99972 1.87082 1.21135 0.84303 0.88540 1.00821 1.22903 0.96176 0.99309 0.99257 1.22351 0.97276 0.92147 0.99764 0.91091 1.21103 0.93576 0.94454 1.00143 1.21973 0.99667 0.93537 1.01367 1.21686 0.83706 0.95675 0.99938 1.47965 1.08263 1.21887 1.54991 1.17322 0.87007 0.80527 0.77354 1.90789 1.40473 1.53839 1.57375 1.21419 0.94695 1.10649 0.97127 1.22948 0.90687 1.05850 1.01796 1.23963 0.99536 1.02600 0.83854 1.83827 1.21227 1.65572 1.36485 1.24283 0.82086 0.97913 0.98929 1.22087 0.88488 0.91864 1.00264 1.21917 0.98814 0.94627 1.01446 1.21549 0.94265 0.86061 0.96448 0.93882 0.93864 0.94192 0.92657 0.92493 0.91033 0.90182 0.91637 0.91391 0.89126 0.82197 0.77497 0.76959 0.88582 0.91285 0.90083 0.91597 0.94755 0.96655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.41 10.31 55.49 0.57 -26.84 16 2 C -0.01 -0.30 5.49 -17.43 -0.10 -0.39 16 3 Si 0.91 22.22 29.55 -169.99 -5.02 17.19 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 7 C -0.23 -6.35 10.28 -15.06 -0.15 -6.51 16 8 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 9 N -0.61 -15.58 3.39 -170.03 -0.58 -16.16 16 10 C 0.18 4.32 5.38 -3.04 -0.02 4.30 16 11 C -0.14 -2.52 5.43 -24.87 -0.14 -2.65 16 12 C -0.10 -1.59 2.56 -88.46 -0.23 -1.81 16 13 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 14 C -0.07 -0.93 1.65 -90.58 -0.15 -1.08 16 15 C -0.13 -1.48 5.20 -26.61 -0.14 -1.62 16 16 C 0.11 1.25 6.43 -3.71 -0.02 1.23 16 17 N -0.60 -6.79 2.98 -174.32 -0.52 -7.30 16 18 C 0.59 7.51 7.62 -12.54 -0.10 7.41 16 19 O -0.55 -8.67 16.52 5.27 0.09 -8.58 16 20 C -0.23 -2.42 5.49 -103.27 -0.57 -2.99 16 21 C -0.19 -1.51 8.68 -37.45 -0.33 -1.83 16 22 C -0.03 -0.22 12.03 29.30 0.35 0.14 16 23 O -0.18 -1.44 10.52 7.66 0.08 -1.36 16 24 C 0.04 0.33 12.08 30.08 0.36 0.70 16 25 C 0.10 0.90 5.75 -3.93 -0.02 0.88 16 26 C -0.13 -1.44 5.19 -26.83 -0.14 -1.58 16 27 C 0.14 2.87 5.80 -2.52 -0.01 2.85 16 28 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 29 H 0.04 1.18 7.38 -51.93 -0.38 0.79 16 30 H 0.04 1.08 7.50 -51.93 -0.39 0.70 16 31 H 0.05 0.95 8.04 -51.93 -0.42 0.53 16 32 H 0.06 0.95 8.09 -51.93 -0.42 0.53 16 33 H 0.07 0.92 8.13 -51.93 -0.42 0.49 16 34 H 0.08 0.91 7.32 -51.93 -0.38 0.53 16 35 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.09 1.09 7.02 -51.93 -0.36 0.73 16 38 H 0.16 0.97 7.19 -52.49 -0.38 0.59 16 39 H 0.21 0.54 8.06 -52.48 -0.42 0.12 16 40 H 0.21 1.38 8.06 -52.49 -0.42 0.95 16 41 H 0.10 0.81 4.06 -51.93 -0.21 0.59 16 42 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.08 0.90 7.32 -51.93 -0.38 0.52 16 44 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 45 H 0.03 0.67 8.02 -51.92 -0.42 0.26 16 46 H 0.02 0.31 8.03 -51.93 -0.42 -0.11 16 LS Contribution 360.72 15.07 5.44 5.44 Total: -1.00 -34.05 360.72 -8.42 -42.47 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: -7.08 Total: -1.91 kcal Atomic # 6 Polarization: -1.56 SS G_CDS: -1.39 Total: -2.95 kcal Atomic # 7 Polarization: -49.78 SS G_CDS: -0.52 Total: -50.30 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: 0.17 Total: -9.94 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.05 -8.42 -42.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039110465.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.959 kcal (2) G-P(sol) polarization free energy of solvation -34.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds