Wall clock time and date at job start Tue Mar 31 2020 12:28:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86799 * 119.99831 * 2 1 4 4 H 1.48506 * 109.46745 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.46877 * 299.99736 * 3 2 1 6 6 H 1.48495 * 109.47144 * 60.00199 * 3 2 1 7 7 C 1.38812 * 119.99728 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99828 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00216 * 0.02562 * 7 2 1 10 10 C 1.47022 * 125.65163 * 0.03617 * 9 7 2 11 11 C 1.54365 * 107.29108 * 181.06046 * 10 9 7 12 12 C 1.55157 * 102.92352 * 22.13625 * 11 10 9 13 13 H 1.09006 * 111.00333 * 82.63959 * 12 11 10 14 14 C 1.52995 * 111.00660 * 206.45419 * 12 11 10 15 15 C 1.53040 * 109.46151 * 296.82169 * 14 12 11 16 16 C 1.53191 * 109.31228 * 178.61438 * 15 14 12 17 17 N 1.46922 * 108.77612 * 54.63581 * 16 15 14 18 18 C 1.34781 * 120.63265 * 126.36865 * 17 16 15 19 19 O 1.21609 * 119.99756 * 3.69413 * 18 17 16 20 20 C 1.47375 * 120.00064 * 183.69133 * 18 17 16 21 21 C 1.47023 * 127.19326 * 318.54614 * 20 18 17 22 22 C 1.34179 * 105.95291 * 179.97438 * 21 20 18 23 23 O 1.34211 * 109.12693 * 359.97438 * 22 21 20 24 24 C 1.33651 * 110.90914 * 0.02562 * 23 22 21 25 25 C 1.46930 * 118.73882 * 306.64034 * 17 16 15 26 26 C 1.52755 * 109.00660 * 53.31040 * 25 17 16 27 27 C 1.47424 * 125.65010 * 179.97438 * 9 7 2 28 28 H 0.96996 * 120.00238 * 359.97438 * 1 2 3 29 29 H 1.09005 * 109.88230 * 300.44284 * 10 9 7 30 30 H 1.09002 * 109.88231 * 61.45071 * 10 9 7 31 31 H 1.08994 * 110.70610 * 263.79247 * 11 10 9 32 32 H 1.09000 * 110.75761 * 140.50738 * 11 10 9 33 33 H 1.09006 * 109.44940 * 56.78428 * 14 12 11 34 34 H 1.09002 * 109.49665 * 58.65956 * 15 14 12 35 35 H 1.09004 * 109.49500 * 298.56495 * 15 14 12 36 36 H 1.08992 * 109.58886 * 294.84545 * 16 15 14 37 37 H 1.09007 * 109.69964 * 174.48899 * 16 15 14 38 38 H 1.08002 * 127.02128 * 0.22133 * 21 20 18 39 39 H 1.08003 * 125.43556 * 180.02562 * 22 21 20 40 40 H 1.08000 * 125.80832 * 179.97438 * 24 23 22 41 41 H 1.08994 * 109.58711 * 173.14745 * 25 17 16 42 42 H 1.09000 * 109.58211 * 293.57393 * 25 17 16 43 43 H 1.09002 * 109.56535 * 185.55292 * 26 25 17 44 44 H 1.08998 * 109.38757 * 65.51530 * 26 25 17 45 45 H 1.09007 * 110.36202 * 37.06808 * 27 9 7 46 46 H 1.08997 * 110.46460 * 274.79392 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3963 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.1376 -2.5328 -0.0008 11 6 -0.4491 -4.0445 0.0271 12 6 0.8513 -4.6560 0.6122 13 1 0.8558 -4.5964 1.7006 14 6 1.0367 -6.1008 0.1443 15 6 -0.1132 -6.9601 0.6747 16 6 0.0572 -8.3984 0.1757 17 7 1.3932 -8.8762 0.5571 18 6 1.5409 -10.0261 1.2445 19 8 0.5695 -10.7129 1.4965 20 6 2.8797 -10.4511 1.6906 21 6 4.1359 -10.3739 0.9305 22 6 5.0858 -10.8724 1.7365 23 8 4.5270 -11.2393 2.9003 24 6 3.2126 -10.9975 2.8955 25 6 2.5647 -8.0736 0.1802 26 6 2.3667 -6.6418 0.6743 27 6 1.9333 -3.7312 0.0005 28 1 -0.4850 0.8400 0.0004 29 1 -0.5585 -2.0520 0.8824 30 1 -0.5539 -2.0823 -0.9018 31 1 -0.6320 -4.4188 -0.9801 32 1 -1.2992 -4.2518 0.6770 33 1 1.0405 -6.1318 -0.9453 34 1 -1.0616 -6.5604 0.3158 35 1 -0.1025 -6.9495 1.7646 36 1 -0.0438 -8.4232 -0.9093 37 1 -0.7020 -9.0367 0.6280 38 1 4.2678 -9.9901 -0.0703 39 1 6.1330 -10.9632 1.4885 40 1 2.5298 -11.2004 3.7073 41 1 3.4594 -8.4960 0.6374 42 1 2.6724 -8.0712 -0.9045 43 1 3.1832 -6.0154 0.3152 44 1 2.3542 -6.6336 1.7642 45 1 2.8326 -3.7405 0.6165 46 1 2.1682 -4.0432 -1.0171 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039110465.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:06 Heat of formation + Delta-G solvation = -16.230568 kcal Electronic energy + Delta-G solvation = -26872.999361 eV Core-core repulsion = 23149.949920 eV Total energy + Delta-G solvation = -3723.049441 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.47199 -41.14568 -39.68271 -37.93711 -35.29361 -34.16189 -33.25864 -32.03604 -30.99673 -30.64865 -29.23856 -27.05963 -25.63923 -24.55357 -23.69714 -22.44859 -21.75668 -21.67047 -20.83721 -20.21570 -18.83353 -18.73239 -17.70319 -16.97892 -16.84351 -16.76897 -16.36747 -15.97150 -15.70990 -15.47580 -15.15926 -14.82858 -14.46145 -14.29635 -14.15678 -13.97232 -13.80348 -13.71044 -13.43039 -13.27903 -13.03210 -12.87256 -12.74981 -12.32098 -12.21021 -12.13903 -11.95216 -11.81274 -11.62407 -11.34367 -11.25706 -11.07682 -11.04408 -10.70710 -10.54360 -9.78378 -9.58439 -8.87013 -7.83972 -5.19142 0.51458 1.17219 1.45327 1.46505 1.56854 1.81091 2.05623 2.24636 2.50185 3.34125 3.50321 3.65993 3.70414 3.81857 3.85446 3.96311 4.07689 4.15640 4.20016 4.32242 4.43074 4.47165 4.47440 4.57373 4.63891 4.74470 4.75655 4.85745 4.87304 4.91942 4.96942 5.01995 5.06604 5.09043 5.12389 5.22082 5.27031 5.38435 5.42248 5.47679 5.57657 5.61768 5.71689 5.80696 6.06336 6.22092 6.36422 7.07192 7.11966 7.80927 8.45687 9.26800 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.022627 B = 0.002651 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.182406 B =10558.910875 C =11463.642886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.072 4.072 3 Si 0.978 3.022 4 H -0.263 1.263 5 H -0.293 1.293 6 H -0.294 1.294 7 C -0.239 4.239 8 H 0.084 0.916 9 N -0.632 5.632 10 C 0.183 3.817 11 C -0.123 4.123 12 C -0.078 4.078 13 H 0.062 0.938 14 C -0.064 4.064 15 C -0.120 4.120 16 C 0.113 3.887 17 N -0.598 5.598 18 C 0.585 3.415 19 O -0.588 6.588 20 C -0.263 4.263 21 C -0.205 4.205 22 C -0.023 4.023 23 O -0.181 6.181 24 C 0.036 3.964 25 C 0.099 3.901 26 C -0.126 4.126 27 C 0.139 3.861 28 H 0.245 0.755 29 H 0.003 0.997 30 H 0.002 0.998 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.056 0.944 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.178 0.822 39 H 0.247 0.753 40 H 0.226 0.774 41 H 0.111 0.889 42 H 0.087 0.913 43 H 0.085 0.915 44 H 0.057 0.943 45 H 0.040 0.960 46 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.264 -23.775 1.605 25.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.264 4.264 3 Si 0.807 3.193 4 H -0.187 1.187 5 H -0.220 1.220 6 H -0.221 1.221 7 C -0.368 4.368 8 H 0.102 0.898 9 N -0.358 5.358 10 C 0.058 3.942 11 C -0.161 4.161 12 C -0.098 4.098 13 H 0.081 0.919 14 C -0.083 4.083 15 C -0.158 4.158 16 C -0.009 4.009 17 N -0.329 5.329 18 C 0.375 3.625 19 O -0.471 6.471 20 C -0.267 4.267 21 C -0.224 4.224 22 C -0.088 4.088 23 O -0.076 6.076 24 C -0.034 4.034 25 C -0.023 4.023 26 C -0.164 4.164 27 C 0.014 3.986 28 H 0.054 0.946 29 H 0.022 0.978 30 H 0.020 0.980 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.098 0.902 34 H 0.103 0.897 35 H 0.074 0.926 36 H 0.101 0.899 37 H 0.097 0.903 38 H 0.195 0.805 39 H 0.263 0.737 40 H 0.242 0.758 41 H 0.129 0.871 42 H 0.105 0.895 43 H 0.104 0.896 44 H 0.076 0.924 45 H 0.058 0.942 46 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 8.908 -24.026 1.939 25.697 hybrid contribution -0.293 1.644 -0.136 1.675 sum 8.614 -22.382 1.804 24.050 Atomic orbital electron populations 1.70220 1.06400 1.25047 1.58702 1.25687 0.96624 1.01162 1.02940 0.85004 0.78304 0.79409 0.76619 1.18703 1.21995 1.22069 1.19535 0.91057 0.83869 1.42364 0.89847 1.44863 1.02539 1.01473 1.86905 1.20911 0.83880 0.92336 0.97117 1.22765 0.97731 0.94675 1.00969 1.22217 0.94678 0.93910 0.98964 0.91935 1.21010 0.94971 0.91690 1.00594 1.21886 0.99474 0.93679 1.00755 1.21660 0.83668 0.94850 1.00698 1.48069 1.08811 1.21644 1.54384 1.17704 0.87501 0.80446 0.76836 1.90758 1.42032 1.55186 1.59091 1.21455 0.94508 1.12305 0.98473 1.23159 0.89689 1.06808 1.02704 1.24739 1.00880 1.00577 0.82610 1.83855 1.20873 1.65487 1.37403 1.24581 0.82607 0.97193 0.99046 1.22197 0.88305 0.90369 1.01401 1.21869 0.97864 0.95726 1.00943 1.21765 0.95286 0.84190 0.97338 0.94574 0.97842 0.98017 0.90893 0.90764 0.90156 0.89677 0.92565 0.89858 0.90319 0.80520 0.73694 0.75768 0.87120 0.89472 0.89611 0.92426 0.94205 0.95488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.74 10.31 21.65 0.22 -58.52 16 2 C -0.07 -4.15 5.49 84.86 0.47 -3.68 16 3 Si 0.98 46.22 29.55 68.60 2.03 48.25 16 4 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 5 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16 6 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 7 C -0.24 -13.54 10.28 84.03 0.86 -12.68 16 8 H 0.08 4.48 7.83 -2.91 -0.02 4.46 16 9 N -0.63 -32.70 3.39 -691.86 -2.35 -35.05 16 10 C 0.18 9.19 5.38 86.74 0.47 9.66 16 11 C -0.12 -4.38 5.43 31.80 0.17 -4.20 16 12 C -0.08 -2.47 2.56 -9.40 -0.02 -2.49 16 13 H 0.06 2.10 8.14 -2.38 -0.02 2.08 16 14 C -0.06 -1.44 1.65 -10.77 -0.02 -1.46 16 15 C -0.12 -2.55 5.20 30.67 0.16 -2.39 16 16 C 0.11 2.34 6.43 86.36 0.55 2.89 16 17 N -0.60 -12.46 2.98 -823.69 -2.45 -14.92 16 18 C 0.58 14.40 7.62 86.65 0.66 15.06 16 19 O -0.59 -18.80 16.52 -4.06 -0.07 -18.87 16 20 C -0.26 -5.05 5.49 -18.99 -0.10 -5.15 16 21 C -0.20 -2.61 8.68 23.65 0.21 -2.41 16 22 C -0.02 -0.22 12.03 66.89 0.80 0.59 16 23 O -0.18 -2.56 10.52 4.51 0.05 -2.52 16 24 C 0.04 0.59 12.08 67.40 0.81 1.40 16 25 C 0.10 1.58 5.75 86.22 0.50 2.07 16 26 C -0.13 -2.45 5.19 30.53 0.16 -2.29 16 27 C 0.14 5.39 5.80 86.86 0.50 5.90 16 28 H 0.24 14.64 8.31 -92.71 -0.77 13.87 16 29 H 0.00 0.19 7.38 -2.38 -0.02 0.17 16 30 H 0.00 0.09 7.50 -2.39 -0.02 0.07 16 31 H 0.07 2.35 8.04 -2.39 -0.02 2.33 16 32 H 0.07 2.39 8.09 -2.39 -0.02 2.37 16 33 H 0.08 1.76 8.13 -2.38 -0.02 1.74 16 34 H 0.08 1.74 7.32 -2.39 -0.02 1.72 16 35 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 36 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.08 1.85 7.02 -2.38 -0.02 1.84 16 38 H 0.18 1.52 7.19 -2.91 -0.02 1.50 16 39 H 0.25 0.17 8.06 -2.91 -0.02 0.14 16 40 H 0.23 2.77 8.06 -2.91 -0.02 2.74 16 41 H 0.11 1.51 4.06 -2.39 -0.01 1.50 16 42 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 43 H 0.09 1.62 7.32 -2.39 -0.02 1.61 16 44 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 45 H 0.04 1.50 8.02 -2.38 -0.02 1.48 16 46 H 0.03 1.01 8.03 -2.39 -0.02 0.99 16 Total: -1.00 -76.78 360.72 4.58 -72.21 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: 0.97 Total: 8.59 kcal Atomic # 6 Polarization: -5.36 SS G_CDS: 6.18 Total: 0.82 kcal Atomic # 7 Polarization: -103.91 SS G_CDS: -4.58 Total: -108.49 kcal Atomic # 8 Polarization: -21.36 SS G_CDS: -0.02 Total: -21.38 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 2.03 Total: 48.25 kcal Total: -76.78 4.58 -72.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039110465.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.977 kcal (2) G-P(sol) polarization free energy of solvation -76.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds