Wall clock time and date at job start Tue Mar 31 2020 12:29:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 119.99960 * 2 1 4 4 H 1.48501 * 109.47043 * 354.10449 * 3 2 1 5 5 H 1.48499 * 109.47256 * 234.10571 * 3 2 1 6 6 H 1.48495 * 109.47340 * 114.10258 * 3 2 1 7 7 C 1.38811 * 119.99863 * 180.02562 * 2 1 3 8 8 H 1.07989 * 120.00449 * 33.54086 * 7 2 1 9 9 N 1.36940 * 119.99643 * 213.54281 * 7 2 1 10 10 C 1.47022 * 125.64844 * 354.97558 * 9 7 2 11 11 C 1.54335 * 107.26679 * 178.84884 * 10 9 7 12 12 C 1.55156 * 103.01897 * 338.14145 * 11 10 9 13 13 H 1.08993 * 111.00371 * 277.23020 * 12 11 10 14 14 C 1.53002 * 111.03760 * 153.39508 * 12 11 10 15 15 H 1.08998 * 109.58633 * 184.82208 * 14 12 11 16 16 C 1.53194 * 109.58683 * 305.10657 * 14 12 11 17 17 C 1.53036 * 109.31305 * 174.42343 * 16 14 12 18 18 C 1.53045 * 109.53559 * 298.63194 * 17 16 14 19 19 C 1.53188 * 109.31362 * 61.36846 * 18 17 16 20 20 N 1.46922 * 109.58663 * 64.39337 * 14 12 11 21 21 C 1.34780 * 120.63335 * 6.58135 * 20 14 12 22 22 O 1.21618 * 119.99594 * 7.40711 * 21 20 14 23 23 C 1.47374 * 120.00355 * 187.40313 * 21 20 14 24 24 C 1.47027 * 127.19115 * 206.26520 * 23 21 20 25 25 C 1.34179 * 105.95055 * 179.82825 * 24 23 21 26 26 O 1.34218 * 109.12403 * 0.43853 * 25 24 23 27 27 C 1.33651 * 110.91101 * 359.70262 * 26 25 24 28 28 C 1.47419 * 125.64988 * 175.28449 * 9 7 2 29 29 H 0.96998 * 119.99713 * 185.00995 * 1 2 3 30 30 H 1.09000 * 109.87916 * 298.39469 * 10 9 7 31 31 H 1.08997 * 109.88793 * 59.55821 * 10 9 7 32 32 H 1.08994 * 110.85001 * 219.67263 * 11 10 9 33 33 H 1.08999 * 110.66393 * 96.52236 * 11 10 9 34 34 H 1.09004 * 109.49720 * 294.37658 * 16 14 12 35 35 H 1.09000 * 109.49545 * 54.43779 * 16 14 12 36 36 H 1.08997 * 109.46428 * 58.65641 * 17 16 14 37 37 H 1.08999 * 109.45781 * 178.61594 * 17 16 14 38 38 H 1.09005 * 109.49533 * 181.31708 * 18 17 16 39 39 H 1.08998 * 109.49786 * 301.41483 * 18 17 16 40 40 H 1.08999 * 109.58771 * 65.14864 * 19 18 17 41 41 H 1.08995 * 109.59115 * 185.43177 * 19 18 17 42 42 H 1.08001 * 127.02143 * 359.97438 * 24 23 21 43 43 H 1.08006 * 125.43717 * 180.13980 * 25 24 23 44 44 H 1.07993 * 125.80391 * 179.97438 * 27 26 25 45 45 H 1.09004 * 110.36445 * 322.93090 * 28 9 7 46 46 H 1.08997 * 110.36948 * 85.25031 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2916 2.7427 -0.1438 5 1 3.2086 1.6360 -1.1342 6 1 2.9928 1.7606 1.2780 7 6 2.0102 -1.2022 -0.0005 8 1 1.6052 -2.0593 -0.5176 9 7 3.2086 -1.3011 0.6547 10 6 3.9226 -0.1937 1.3068 11 6 5.2044 -0.7814 1.9343 12 6 4.8632 -2.2880 2.0797 13 1 4.2896 -2.4728 2.9879 14 6 6.1314 -3.1435 2.0520 15 1 5.8605 -4.1991 2.0695 16 6 6.9287 -2.8389 0.7799 17 6 8.2603 -3.5919 0.8246 18 6 9.0755 -3.1188 2.0304 19 6 8.3026 -3.4266 3.3167 20 7 6.9649 -2.8266 3.2197 21 6 6.5114 -2.0007 4.1834 22 8 5.3575 -1.6171 4.1620 23 6 7.4136 -1.5624 5.2631 24 6 7.0369 -1.1449 6.6215 25 6 8.1850 -0.8402 7.2455 26 8 9.2086 -1.0235 6.3969 27 6 8.7724 -1.4539 5.2091 28 6 3.9995 -2.5345 0.8176 29 1 -0.4849 -0.8368 0.0734 30 1 4.1831 0.5650 0.5688 31 1 3.2975 0.2430 2.0857 32 1 5.3994 -0.3343 2.9090 33 1 6.0570 -0.6415 1.2698 34 1 6.3587 -3.1592 -0.0922 35 1 7.1181 -1.7673 0.7171 36 1 8.0699 -4.6615 0.9120 37 1 8.8189 -3.3963 -0.0907 38 1 10.0334 -3.6386 2.0483 39 1 9.2451 -2.0447 1.9561 40 1 8.2109 -4.5059 3.4385 41 1 8.8329 -3.0063 4.1711 42 1 6.0398 -1.0958 7.0338 43 1 8.2713 -0.4973 8.2660 44 1 9.3904 -1.6773 4.3522 45 1 3.3412 -3.3899 0.9696 46 1 4.6361 -2.6946 -0.0525 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039186157.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:02 Heat of formation + Delta-G solvation = 63.149075 kcal Electronic energy + Delta-G solvation = -28406.792797 eV Core-core repulsion = 24687.185515 eV Total energy + Delta-G solvation = -3719.607282 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.82270 -40.73310 -37.53543 -37.14334 -33.80856 -32.88998 -32.55724 -31.47546 -29.87779 -29.01173 -27.98007 -25.66590 -24.22959 -23.37591 -22.64283 -21.72880 -21.05920 -20.65064 -19.83720 -18.87613 -17.75131 -17.26773 -16.60541 -16.28276 -15.73180 -15.48739 -15.22799 -15.09625 -14.83961 -14.11571 -13.81560 -13.72428 -13.51098 -13.20591 -13.07755 -13.05105 -12.81552 -12.58387 -12.40495 -11.97133 -11.76085 -11.35652 -11.17705 -11.02016 -10.78423 -10.68239 -10.54083 -10.27387 -10.12326 -9.94557 -9.70979 -9.50875 -9.07744 -8.88125 -8.79791 -8.41615 -8.15473 -6.88714 -6.23362 -2.95840 1.16347 1.90417 2.62714 2.92073 3.20315 3.60808 3.65518 3.84722 4.28519 4.38067 4.49780 4.60316 4.67586 4.80511 4.80868 4.94597 5.02417 5.13507 5.19136 5.27933 5.31509 5.44300 5.46665 5.54900 5.57099 5.63526 5.67921 5.73758 5.82991 5.86550 5.92493 5.98563 6.04138 6.06796 6.29785 6.36074 6.51075 6.62923 6.69619 6.71454 6.76395 6.92148 7.12360 7.24424 7.42096 7.90666 8.29166 8.48895 9.18726 9.78448 10.47381 11.25212 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.015669 B = 0.004355 C = 0.003732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.536275 B = 6427.786773 C = 7500.998998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C -0.012 4.012 3 Si 1.034 2.966 4 H -0.301 1.301 5 H -0.300 1.300 6 H -0.276 1.276 7 C -0.335 4.335 8 H 0.077 0.923 9 N -0.608 5.608 10 C 0.125 3.875 11 C -0.128 4.128 12 C -0.098 4.098 13 H 0.112 0.888 14 C 0.164 3.836 15 H 0.072 0.928 16 C -0.140 4.140 17 C -0.118 4.118 18 C -0.138 4.138 19 C 0.084 3.916 20 N -0.604 5.604 21 C 0.572 3.428 22 O -0.495 6.495 23 C -0.221 4.221 24 C -0.166 4.166 25 C -0.041 4.041 26 O -0.178 6.178 27 C -0.003 4.003 28 C 0.137 3.863 29 H 0.263 0.737 30 H 0.017 0.983 31 H 0.041 0.959 32 H 0.086 0.914 33 H 0.052 0.948 34 H 0.083 0.917 35 H 0.075 0.925 36 H 0.063 0.937 37 H 0.065 0.935 38 H 0.074 0.926 39 H 0.067 0.933 40 H 0.070 0.930 41 H 0.096 0.904 42 H 0.159 0.841 43 H 0.208 0.792 44 H 0.219 0.781 45 H 0.038 0.962 46 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.101 -7.631 11.858 28.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.213 4.213 3 Si 0.866 3.134 4 H -0.228 1.228 5 H -0.228 1.228 6 H -0.203 1.203 7 C -0.462 4.462 8 H 0.095 0.905 9 N -0.335 5.335 10 C 0.001 3.999 11 C -0.165 4.165 12 C -0.117 4.117 13 H 0.130 0.870 14 C 0.061 3.939 15 H 0.090 0.910 16 C -0.178 4.178 17 C -0.156 4.156 18 C -0.177 4.177 19 C -0.038 4.038 20 N -0.338 5.338 21 C 0.361 3.639 22 O -0.371 6.371 23 C -0.226 4.226 24 C -0.186 4.186 25 C -0.107 4.107 26 O -0.073 6.073 27 C -0.072 4.072 28 C 0.010 3.990 29 H 0.072 0.928 30 H 0.034 0.966 31 H 0.059 0.941 32 H 0.104 0.896 33 H 0.071 0.929 34 H 0.102 0.898 35 H 0.094 0.906 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.093 0.907 39 H 0.086 0.914 40 H 0.088 0.912 41 H 0.113 0.887 42 H 0.177 0.823 43 H 0.224 0.776 44 H 0.235 0.765 45 H 0.057 0.943 46 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 24.451 -5.736 11.797 27.747 hybrid contribution 0.148 -1.696 -0.241 1.720 sum 24.599 -7.432 11.556 28.176 Atomic orbital electron populations 1.70925 1.06453 1.29093 1.48367 1.25534 0.95730 1.00801 0.99229 0.84432 0.74729 0.77305 0.76953 1.22832 1.22788 1.20332 1.19961 0.93921 0.99806 1.32512 0.90495 1.44798 1.22244 1.02679 1.63787 1.21791 0.92130 0.91248 0.94764 1.23128 0.97079 0.95723 1.00571 1.22860 0.94055 0.94395 1.00372 0.87032 1.21186 0.90292 0.99081 0.83334 0.90997 1.22189 0.95774 1.01739 0.98106 1.21515 0.96280 1.00115 0.97683 1.21972 0.98622 1.02034 0.95032 1.22262 0.83467 0.99052 0.99031 1.47883 1.16720 1.47159 1.22004 1.17299 0.86857 0.78874 0.80844 1.90858 1.17220 1.55009 1.74033 1.21718 0.93448 1.10569 0.96854 1.22832 0.99970 1.03435 0.92356 1.23945 0.84561 1.05897 0.96346 1.83802 1.37212 1.65706 1.20578 1.24858 0.94330 1.00059 0.87942 1.21711 0.92822 0.90609 0.93866 0.92761 0.96602 0.94150 0.89632 0.92917 0.89831 0.90630 0.91837 0.91659 0.90718 0.91420 0.91183 0.88685 0.82306 0.77565 0.76533 0.94322 0.96444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -29.82 13.70 55.49 0.76 -29.06 16 2 C -0.01 -0.36 5.43 -17.43 -0.09 -0.46 16 3 Si 1.03 28.09 25.08 -169.99 -4.26 23.83 16 4 H -0.30 -8.24 7.11 56.52 0.40 -7.84 16 5 H -0.30 -7.91 7.11 56.52 0.40 -7.51 16 6 H -0.28 -7.07 5.06 56.52 0.29 -6.79 16 7 C -0.34 -10.27 10.40 -15.06 -0.16 -10.43 16 8 H 0.08 2.44 8.06 -52.49 -0.42 2.02 16 9 N -0.61 -16.32 3.38 -170.07 -0.57 -16.90 16 10 C 0.13 3.12 4.57 -3.06 -0.01 3.10 16 11 C -0.13 -2.54 5.21 -24.89 -0.13 -2.67 16 12 C -0.10 -1.82 2.14 -88.47 -0.19 -2.01 16 13 H 0.11 2.37 6.03 -51.96 -0.31 2.05 16 14 C 0.16 2.25 2.84 -67.60 -0.19 2.06 16 15 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 16 C -0.14 -1.70 4.70 -26.61 -0.13 -1.82 16 17 C -0.12 -1.02 5.88 -26.69 -0.16 -1.17 16 18 C -0.14 -0.95 5.91 -26.61 -0.16 -1.11 16 19 C 0.08 0.66 5.81 -3.71 -0.02 0.64 16 20 N -0.60 -7.27 2.95 -166.50 -0.49 -7.76 16 21 C 0.57 8.22 6.71 -12.54 -0.08 8.14 16 22 O -0.50 -9.17 10.58 5.26 0.06 -9.11 16 23 C -0.22 -2.58 5.88 -103.28 -0.61 -3.19 16 24 C -0.17 -1.76 11.10 -37.45 -0.42 -2.18 16 25 C -0.04 -0.33 12.03 29.30 0.35 0.02 16 26 O -0.18 -1.54 10.52 7.65 0.08 -1.46 16 27 C 0.00 -0.02 9.88 30.08 0.30 0.27 16 28 C 0.14 2.96 6.60 -2.53 -0.02 2.95 16 29 H 0.26 8.50 8.73 -40.82 -0.36 8.14 16 30 H 0.02 0.42 4.94 -51.93 -0.26 0.16 16 31 H 0.04 1.10 6.59 -51.93 -0.34 0.76 16 32 H 0.09 1.74 5.35 -52.00 -0.28 1.46 16 33 H 0.05 0.96 5.57 -51.93 -0.29 0.67 16 34 H 0.08 1.09 6.39 -51.93 -0.33 0.75 16 35 H 0.08 1.02 5.77 -51.93 -0.30 0.72 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.10 0.61 3.26 -51.93 -0.17 0.44 16 42 H 0.16 1.65 8.06 -52.49 -0.42 1.23 16 43 H 0.21 0.83 8.06 -52.48 -0.42 0.41 16 44 H 0.22 1.21 5.93 -52.49 -0.31 0.89 16 45 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 46 H 0.02 0.36 5.87 -51.93 -0.30 0.06 16 LS Contribution 336.17 15.07 5.07 5.07 Total: -1.00 -36.94 336.17 -7.47 -44.41 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: -6.39 Total: -1.17 kcal Atomic # 6 Polarization: -6.14 SS G_CDS: -1.71 Total: -7.85 kcal Atomic # 7 Polarization: -53.41 SS G_CDS: -0.30 Total: -53.71 kcal Atomic # 8 Polarization: -10.71 SS G_CDS: 0.14 Total: -10.57 kcal Atomic # 14 Polarization: 28.09 SS G_CDS: -4.26 Total: 23.83 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -36.94 -7.47 -44.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039186157.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.558 kcal (2) G-P(sol) polarization free energy of solvation -36.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds