Wall clock time and date at job start Tue Mar 31 2020 12:29:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 119.99960 * 2 1 4 4 H 1.48501 * 109.47043 * 354.10449 * 3 2 1 5 5 H 1.48499 * 109.47256 * 234.10571 * 3 2 1 6 6 H 1.48495 * 109.47340 * 114.10258 * 3 2 1 7 7 C 1.38811 * 119.99863 * 180.02562 * 2 1 3 8 8 H 1.07989 * 120.00449 * 33.54086 * 7 2 1 9 9 N 1.36940 * 119.99643 * 213.54281 * 7 2 1 10 10 C 1.47022 * 125.64844 * 354.97558 * 9 7 2 11 11 C 1.54335 * 107.26679 * 178.84884 * 10 9 7 12 12 C 1.55156 * 103.01897 * 338.14145 * 11 10 9 13 13 H 1.08993 * 111.00371 * 277.23020 * 12 11 10 14 14 C 1.53002 * 111.03760 * 153.39508 * 12 11 10 15 15 H 1.08998 * 109.58633 * 184.82208 * 14 12 11 16 16 C 1.53194 * 109.58683 * 305.10657 * 14 12 11 17 17 C 1.53036 * 109.31305 * 174.42343 * 16 14 12 18 18 C 1.53045 * 109.53559 * 298.63194 * 17 16 14 19 19 C 1.53188 * 109.31362 * 61.36846 * 18 17 16 20 20 N 1.46922 * 109.58663 * 64.39337 * 14 12 11 21 21 C 1.34780 * 120.63335 * 6.58135 * 20 14 12 22 22 O 1.21618 * 119.99594 * 7.40711 * 21 20 14 23 23 C 1.47374 * 120.00355 * 187.40313 * 21 20 14 24 24 C 1.47027 * 127.19115 * 206.26520 * 23 21 20 25 25 C 1.34179 * 105.95055 * 179.82825 * 24 23 21 26 26 O 1.34218 * 109.12403 * 0.43853 * 25 24 23 27 27 C 1.33651 * 110.91101 * 359.70262 * 26 25 24 28 28 C 1.47419 * 125.64988 * 175.28449 * 9 7 2 29 29 H 0.96998 * 119.99713 * 185.00995 * 1 2 3 30 30 H 1.09000 * 109.87916 * 298.39469 * 10 9 7 31 31 H 1.08997 * 109.88793 * 59.55821 * 10 9 7 32 32 H 1.08994 * 110.85001 * 219.67263 * 11 10 9 33 33 H 1.08999 * 110.66393 * 96.52236 * 11 10 9 34 34 H 1.09004 * 109.49720 * 294.37658 * 16 14 12 35 35 H 1.09000 * 109.49545 * 54.43779 * 16 14 12 36 36 H 1.08997 * 109.46428 * 58.65641 * 17 16 14 37 37 H 1.08999 * 109.45781 * 178.61594 * 17 16 14 38 38 H 1.09005 * 109.49533 * 181.31708 * 18 17 16 39 39 H 1.08998 * 109.49786 * 301.41483 * 18 17 16 40 40 H 1.08999 * 109.58771 * 65.14864 * 19 18 17 41 41 H 1.08995 * 109.59115 * 185.43177 * 19 18 17 42 42 H 1.08001 * 127.02143 * 359.97438 * 24 23 21 43 43 H 1.08006 * 125.43717 * 180.13980 * 25 24 23 44 44 H 1.07993 * 125.80391 * 179.97438 * 27 26 25 45 45 H 1.09004 * 110.36445 * 322.93090 * 28 9 7 46 46 H 1.08997 * 110.36948 * 85.25031 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2916 2.7427 -0.1438 5 1 3.2086 1.6360 -1.1342 6 1 2.9928 1.7606 1.2780 7 6 2.0102 -1.2022 -0.0005 8 1 1.6052 -2.0593 -0.5176 9 7 3.2086 -1.3011 0.6547 10 6 3.9226 -0.1937 1.3068 11 6 5.2044 -0.7814 1.9343 12 6 4.8632 -2.2880 2.0797 13 1 4.2896 -2.4728 2.9879 14 6 6.1314 -3.1435 2.0520 15 1 5.8605 -4.1991 2.0695 16 6 6.9287 -2.8389 0.7799 17 6 8.2603 -3.5919 0.8246 18 6 9.0755 -3.1188 2.0304 19 6 8.3026 -3.4266 3.3167 20 7 6.9649 -2.8266 3.2197 21 6 6.5114 -2.0007 4.1834 22 8 5.3575 -1.6171 4.1620 23 6 7.4136 -1.5624 5.2631 24 6 7.0369 -1.1449 6.6215 25 6 8.1850 -0.8402 7.2455 26 8 9.2086 -1.0235 6.3969 27 6 8.7724 -1.4539 5.2091 28 6 3.9995 -2.5345 0.8176 29 1 -0.4849 -0.8368 0.0734 30 1 4.1831 0.5650 0.5688 31 1 3.2975 0.2430 2.0857 32 1 5.3994 -0.3343 2.9090 33 1 6.0570 -0.6415 1.2698 34 1 6.3587 -3.1592 -0.0922 35 1 7.1181 -1.7673 0.7171 36 1 8.0699 -4.6615 0.9120 37 1 8.8189 -3.3963 -0.0907 38 1 10.0334 -3.6386 2.0483 39 1 9.2451 -2.0447 1.9561 40 1 8.2109 -4.5059 3.4385 41 1 8.8329 -3.0063 4.1711 42 1 6.0398 -1.0958 7.0338 43 1 8.2713 -0.4973 8.2660 44 1 9.3904 -1.6773 4.3522 45 1 3.3412 -3.3899 0.9696 46 1 4.6361 -2.6946 -0.0525 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039186157.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:01 Heat of formation + Delta-G solvation = 37.266391 kcal Electronic energy + Delta-G solvation = -28407.915154 eV Core-core repulsion = 24687.185515 eV Total energy + Delta-G solvation = -3720.729639 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -43.52656 -41.83667 -39.04319 -38.28951 -35.29284 -34.20706 -33.48742 -32.95640 -30.92594 -30.55736 -29.43644 -26.90064 -25.61982 -24.63177 -23.76496 -22.57911 -22.47335 -21.70234 -21.22383 -20.00237 -19.45280 -18.52747 -17.59610 -17.18689 -16.86693 -16.83691 -16.68356 -16.18836 -15.79105 -15.51505 -15.17536 -14.95384 -14.83652 -14.68230 -14.25699 -14.20123 -13.93781 -13.76977 -13.41075 -13.21741 -13.19503 -12.94027 -12.77272 -12.31290 -12.12673 -11.91874 -11.86430 -11.68254 -11.58450 -11.42335 -11.29564 -10.91684 -10.74756 -10.55234 -10.14479 -9.65580 -9.45600 -9.12918 -8.72217 -5.37480 0.41364 1.17096 1.40341 1.44759 1.66792 1.85424 2.14451 2.25312 2.53511 2.90214 3.36316 3.51282 3.72132 3.76786 3.81005 3.87420 3.99166 4.06959 4.11560 4.15706 4.20308 4.36269 4.40629 4.50112 4.54807 4.63752 4.66488 4.75494 4.76522 4.81745 4.88445 4.97233 5.01750 5.07541 5.15059 5.16348 5.25025 5.26559 5.32959 5.34410 5.49484 5.52640 5.59341 5.73699 6.03065 6.07368 6.46940 6.79773 7.25734 7.49163 8.15955 8.77398 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.015669 B = 0.004355 C = 0.003732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.536275 B = 6427.786773 C = 7500.998998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.066 4.066 3 Si 1.077 2.923 4 H -0.303 1.303 5 H -0.283 1.283 6 H -0.257 1.257 7 C -0.333 4.333 8 H 0.051 0.949 9 N -0.629 5.629 10 C 0.120 3.880 11 C -0.110 4.110 12 C -0.080 4.080 13 H 0.081 0.919 14 C 0.169 3.831 15 H 0.081 0.919 16 C -0.136 4.136 17 C -0.114 4.114 18 C -0.133 4.133 19 C 0.079 3.921 20 N -0.599 5.599 21 C 0.567 3.433 22 O -0.554 6.554 23 C -0.258 4.258 24 C -0.204 4.204 25 C -0.018 4.018 26 O -0.175 6.175 27 C 0.025 3.975 28 C 0.131 3.869 29 H 0.251 0.749 30 H 0.018 0.982 31 H 0.010 0.990 32 H 0.085 0.915 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.064 0.936 36 H 0.072 0.928 37 H 0.077 0.923 38 H 0.109 0.891 39 H 0.069 0.931 40 H 0.083 0.917 41 H 0.113 0.887 42 H 0.146 0.854 43 H 0.246 0.754 44 H 0.252 0.748 45 H 0.026 0.974 46 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.492 -7.969 12.620 33.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.262 4.262 3 Si 0.904 3.096 4 H -0.231 1.231 5 H -0.210 1.210 6 H -0.182 1.182 7 C -0.461 4.461 8 H 0.069 0.931 9 N -0.357 5.357 10 C -0.004 4.004 11 C -0.147 4.147 12 C -0.100 4.100 13 H 0.099 0.901 14 C 0.066 3.934 15 H 0.099 0.901 16 C -0.174 4.174 17 C -0.152 4.152 18 C -0.171 4.171 19 C -0.041 4.041 20 N -0.331 5.331 21 C 0.358 3.642 22 O -0.434 6.434 23 C -0.262 4.262 24 C -0.224 4.224 25 C -0.084 4.084 26 O -0.069 6.069 27 C -0.044 4.044 28 C 0.006 3.994 29 H 0.059 0.941 30 H 0.035 0.965 31 H 0.028 0.972 32 H 0.103 0.897 33 H 0.095 0.905 34 H 0.090 0.910 35 H 0.082 0.918 36 H 0.091 0.909 37 H 0.096 0.904 38 H 0.127 0.873 39 H 0.088 0.912 40 H 0.101 0.899 41 H 0.131 0.869 42 H 0.164 0.836 43 H 0.262 0.738 44 H 0.267 0.733 45 H 0.044 0.956 46 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 29.926 -6.129 12.565 33.031 hybrid contribution -1.531 -1.730 -0.429 2.350 sum 28.396 -7.859 12.136 31.865 Atomic orbital electron populations 1.71021 1.07449 1.28421 1.51372 1.26758 0.95874 1.04128 0.99410 0.83858 0.74004 0.73347 0.78360 1.23125 1.20959 1.18200 1.19920 0.95491 0.98892 1.31840 0.93070 1.44912 1.22093 1.05274 1.63384 1.21845 0.93659 0.91081 0.93848 1.23027 0.95199 0.96008 1.00515 1.22593 0.95773 0.94649 0.96962 0.90094 1.21006 0.88808 0.98264 0.85340 0.90113 1.22132 0.97569 1.01537 0.96192 1.21507 0.94275 1.00083 0.99304 1.21991 0.99426 1.02625 0.93039 1.22599 0.81238 0.99692 1.00589 1.47962 1.18079 1.46463 1.20627 1.17777 0.86551 0.78440 0.81400 1.90831 1.19653 1.57369 1.75568 1.21603 0.94574 1.13373 0.96679 1.22938 1.00681 1.05860 0.92930 1.24553 0.83233 1.03372 0.97222 1.83857 1.37210 1.65222 1.20636 1.25323 0.93211 0.97422 0.88436 1.21949 0.92859 0.88237 0.96369 0.94054 0.96464 0.97234 0.89716 0.90539 0.91004 0.91767 0.90922 0.90433 0.87270 0.91236 0.89874 0.86928 0.83578 0.73799 0.73266 0.95584 0.94119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -64.23 13.70 21.65 0.30 -63.94 16 2 C -0.07 -4.26 5.43 84.86 0.46 -3.80 16 3 Si 1.08 58.08 25.08 68.60 1.72 59.80 16 4 H -0.30 -16.37 7.11 99.48 0.71 -15.66 16 5 H -0.28 -14.34 7.11 99.48 0.71 -13.64 16 6 H -0.26 -12.94 5.06 99.48 0.50 -12.44 16 7 C -0.33 -21.25 10.40 84.03 0.87 -20.37 16 8 H 0.05 3.44 8.06 -2.92 -0.02 3.41 16 9 N -0.63 -34.72 3.38 -691.99 -2.34 -37.06 16 10 C 0.12 6.05 4.57 86.73 0.40 6.45 16 11 C -0.11 -4.37 5.21 31.79 0.17 -4.21 16 12 C -0.08 -3.03 2.14 -9.40 -0.02 -3.05 16 13 H 0.08 3.61 6.03 -2.80 -0.02 3.60 16 14 C 0.17 4.41 2.84 44.98 0.13 4.53 16 15 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 16 C -0.14 -2.94 4.70 30.67 0.14 -2.80 16 17 C -0.11 -1.46 5.88 30.62 0.18 -1.28 16 18 C -0.13 -1.10 5.91 30.67 0.18 -0.92 16 19 C 0.08 0.90 5.81 86.36 0.50 1.40 16 20 N -0.60 -13.13 2.95 -798.93 -2.35 -15.49 16 21 C 0.57 15.95 6.71 86.65 0.58 16.53 16 22 O -0.55 -21.27 10.58 -4.09 -0.04 -21.31 16 23 C -0.26 -5.60 5.88 -18.99 -0.11 -5.71 16 24 C -0.20 -4.17 11.10 23.65 0.26 -3.91 16 25 C -0.02 -0.23 12.03 66.89 0.80 0.57 16 26 O -0.17 -2.32 10.52 4.46 0.05 -2.28 16 27 C 0.03 0.34 9.88 67.39 0.67 1.00 16 28 C 0.13 5.80 6.60 86.86 0.57 6.38 16 29 H 0.25 17.11 8.73 -92.71 -0.81 16.30 16 30 H 0.02 0.89 4.94 -2.39 -0.01 0.88 16 31 H 0.01 0.54 6.59 -2.39 -0.02 0.53 16 32 H 0.08 3.48 5.35 -3.57 -0.02 3.46 16 33 H 0.08 2.65 5.57 -2.39 -0.01 2.63 16 34 H 0.07 1.71 6.39 -2.39 -0.02 1.70 16 35 H 0.06 1.54 5.77 -2.39 -0.01 1.53 16 36 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.11 0.29 8.14 -2.38 -0.02 0.27 16 39 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 40 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.11 0.88 3.26 -2.39 -0.01 0.87 16 42 H 0.15 3.22 8.06 -2.91 -0.02 3.20 16 43 H 0.25 1.00 8.06 -2.91 -0.02 0.97 16 44 H 0.25 1.39 5.93 -2.91 -0.02 1.37 16 45 H 0.03 1.19 8.14 -2.38 -0.02 1.17 16 46 H 0.04 1.65 5.87 -2.39 -0.01 1.63 16 Total: -1.00 -86.53 336.17 3.87 -82.66 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: 0.76 Total: 6.79 kcal Atomic # 6 Polarization: -14.96 SS G_CDS: 5.79 Total: -9.17 kcal Atomic # 7 Polarization: -112.09 SS G_CDS: -4.40 Total: -116.48 kcal Atomic # 8 Polarization: -23.59 SS G_CDS: 0.00 Total: -23.59 kcal Atomic # 14 Polarization: 58.08 SS G_CDS: 1.72 Total: 59.80 kcal Total: -86.53 3.87 -82.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039186157.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.928 kcal (2) G-P(sol) polarization free energy of solvation -86.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds