Wall clock time and date at job start Tue Mar 31 2020 12:27:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86801 * 120.00066 * 2 1 4 4 H 1.48497 * 109.46969 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47299 * 299.99699 * 3 2 1 6 6 H 1.48498 * 109.47097 * 60.00098 * 3 2 1 7 7 C 1.38814 * 119.99916 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99817 * 180.02562 * 7 2 1 9 9 N 1.36933 * 119.99860 * 359.97438 * 7 2 1 10 10 C 1.47881 * 119.99924 * 179.97438 * 9 7 2 11 11 C 1.52319 * 107.89207 * 277.26078 * 10 9 7 12 12 C 1.52532 * 112.64943 * 192.38695 * 11 10 9 13 13 H 1.10206 * 109.56507 * 171.33711 * 12 11 10 14 14 C 1.52593 * 111.77551 * 292.93888 * 12 11 10 15 15 C 1.52102 * 112.65597 * 67.27815 * 14 12 11 16 16 C 1.52090 * 113.43719 * 47.71419 * 15 14 12 17 17 C 1.52567 * 112.81627 * 312.70874 * 16 15 14 18 18 H 1.10162 * 109.60737 * 170.61829 * 17 16 15 19 19 C 1.52316 * 107.88968 * 155.00230 * 10 9 7 20 20 N 1.47293 * 108.59976 * 51.42602 * 17 16 15 21 21 C 1.34539 * 122.50223 * 119.39876 * 20 17 16 22 22 O 1.21280 * 119.99732 * 180.02562 * 21 20 17 23 23 C 1.50701 * 119.99812 * 0.02562 * 21 20 17 24 24 C 1.50702 * 109.46758 * 179.97438 * 23 21 20 25 25 C 1.41377 * 126.58353 * 269.71009 * 24 23 21 26 26 C 1.34512 * 106.84132 * 179.83453 * 25 24 23 27 27 O 1.34296 * 108.42194 * 0.43319 * 26 25 24 28 28 C 1.34299 * 109.47599 * 359.72095 * 27 26 25 29 29 H 0.97005 * 120.00034 * 359.97438 * 1 2 3 30 30 H 0.97003 * 120.00141 * 0.02562 * 9 7 2 31 31 H 1.08626 * 106.52202 * 36.14296 * 10 9 7 32 32 H 1.09671 * 109.07045 * 313.86095 * 11 10 9 33 33 H 1.09701 * 109.03152 * 71.01574 * 11 10 9 34 34 H 1.09702 * 109.16907 * 188.73542 * 14 12 11 35 35 H 1.09726 * 109.11082 * 305.89671 * 14 12 11 36 36 H 1.11095 * 107.15594 * 165.77962 * 15 14 12 37 37 H 1.08250 * 111.59616 * 280.57192 * 15 14 12 38 38 H 1.09729 * 109.14773 * 74.22377 * 16 15 14 39 39 H 1.09748 * 109.11666 * 191.28200 * 16 15 14 40 40 H 1.09692 * 109.04464 * 288.91479 * 19 10 9 41 41 H 1.09670 * 109.07895 * 46.10356 * 19 10 9 42 42 H 1.08999 * 109.46993 * 299.99908 * 23 21 20 43 43 H 1.08997 * 109.47285 * 59.99929 * 23 21 20 44 44 H 1.08003 * 126.57896 * 0.02562 * 25 24 23 45 45 H 1.07999 * 125.78944 * 180.11921 * 26 25 24 46 46 H 1.08009 * 125.79142 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0016 10 6 2.0649 -3.6687 0.0016 11 6 2.4564 -3.9830 -1.4365 12 6 2.9562 -5.4137 -1.6099 13 1 3.0766 -5.6351 -2.6827 14 6 4.2823 -5.6412 -0.8901 15 6 4.1480 -5.5664 0.6231 16 6 2.9840 -6.3796 1.1680 17 6 1.6876 -6.1461 0.3983 18 1 0.9288 -6.8760 0.7222 19 6 1.1615 -4.7305 0.6153 20 7 1.9544 -6.3309 -1.0384 21 6 1.3304 -7.2680 -1.7749 22 8 1.5855 -7.3808 -2.9552 23 6 0.3143 -8.1774 -1.1332 24 6 -0.2328 -9.1278 -2.1669 25 6 -1.3637 -8.9187 -2.9891 26 6 -1.4910 -10.0120 -3.7623 27 8 -0.5083 -10.8714 -3.4472 28 6 0.2578 -10.3405 -2.4802 29 1 -0.4850 0.8401 0.0004 30 1 0.3555 -2.3880 0.0016 31 1 2.9481 -3.5155 0.6151 32 1 1.5886 -3.8219 -2.0875 33 1 3.2416 -3.2859 -1.7540 34 1 4.6791 -6.6253 -1.1684 35 1 5.0065 -4.8878 -1.2248 36 1 5.0776 -5.9937 1.0561 37 1 4.1160 -4.5415 0.9701 38 1 3.2396 -7.4459 1.1274 39 1 2.8270 -6.1202 2.2228 40 1 1.0680 -4.5421 1.6919 41 1 0.1600 -4.6462 0.1766 42 1 0.7889 -8.7447 -0.3325 43 1 -0.4996 -7.5802 -0.7223 44 1 -2.0012 -8.0469 -2.9971 45 1 -2.2568 -10.1736 -4.5065 46 1 1.1216 -10.8078 -2.0307 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039274305.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:19 Heat of formation + Delta-G solvation = -30.479022 kcal Electronic energy + Delta-G solvation = -27619.177543 eV Core-core repulsion = 23895.510242 eV Total energy + Delta-G solvation = -3723.667301 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.41971 -41.79111 -39.32636 -36.53552 -35.04934 -33.98863 -33.78649 -33.52744 -31.30372 -30.64258 -28.73612 -27.14562 -26.55444 -24.89009 -23.08109 -22.50085 -22.35763 -21.50855 -20.86811 -19.45663 -18.65997 -18.33132 -17.84931 -16.88038 -16.79406 -16.42637 -16.30321 -15.87099 -15.54813 -15.34341 -14.92872 -14.85391 -14.70724 -14.53702 -14.35556 -14.12140 -13.88779 -13.66346 -13.47483 -13.30817 -12.93036 -12.79024 -12.60987 -12.46350 -12.40414 -12.16905 -11.92021 -11.86746 -11.81722 -11.49530 -11.29099 -10.99287 -10.92287 -10.71526 -10.43032 -9.52827 -9.39372 -8.99031 -7.92862 -5.20160 0.90863 1.46140 1.46973 1.56322 1.58405 1.70275 2.16780 2.35189 2.56202 3.40332 3.55602 3.69961 3.79366 3.89900 3.94609 4.01260 4.03125 4.10450 4.15695 4.18011 4.33124 4.33613 4.43720 4.55265 4.57052 4.62233 4.70871 4.76095 4.83597 4.96234 4.97547 5.06752 5.09872 5.11441 5.13688 5.19702 5.29244 5.33327 5.38405 5.46702 5.53341 5.59550 5.66906 5.71987 6.22427 6.28826 6.59719 7.25464 7.35271 8.09975 8.34878 9.31022 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.018357 B = 0.003284 C = 0.003014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.935989 B = 8523.324893 C = 9287.817557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.079 4.079 3 Si 0.966 3.034 4 H -0.265 1.265 5 H -0.299 1.299 6 H -0.293 1.293 7 C -0.229 4.229 8 H 0.075 0.925 9 N -0.745 5.745 10 C 0.178 3.822 11 C -0.122 4.122 12 C 0.150 3.850 13 H 0.068 0.932 14 C -0.113 4.113 15 C -0.121 4.121 16 C -0.119 4.119 17 C 0.145 3.855 18 H 0.125 0.875 19 C -0.124 4.124 20 N -0.598 5.598 21 C 0.515 3.485 22 O -0.589 6.589 23 C -0.062 4.062 24 C -0.182 4.182 25 C -0.228 4.228 26 C -0.045 4.045 27 O -0.189 6.189 28 C -0.035 4.035 29 H 0.248 0.752 30 H 0.368 0.632 31 H 0.064 0.936 32 H 0.024 0.976 33 H 0.050 0.950 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.060 0.940 38 H 0.084 0.916 39 H 0.092 0.908 40 H 0.083 0.917 41 H 0.047 0.953 42 H 0.137 0.863 43 H 0.113 0.887 44 H 0.146 0.854 45 H 0.232 0.768 46 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.200 -23.419 2.318 23.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.271 4.271 3 Si 0.796 3.204 4 H -0.189 1.189 5 H -0.227 1.227 6 H -0.221 1.221 7 C -0.361 4.361 8 H 0.093 0.907 9 N -0.385 5.385 10 C 0.072 3.928 11 C -0.163 4.163 12 C 0.045 3.955 13 H 0.087 0.913 14 C -0.151 4.151 15 C -0.158 4.158 16 C -0.157 4.157 17 C 0.042 3.958 18 H 0.143 0.857 19 C -0.163 4.163 20 N -0.330 5.330 21 C 0.305 3.695 22 O -0.469 6.469 23 C -0.102 4.102 24 C -0.184 4.184 25 C -0.247 4.247 26 C -0.112 4.112 27 O -0.085 6.085 28 C -0.102 4.102 29 H 0.057 0.943 30 H 0.199 0.801 31 H 0.082 0.918 32 H 0.043 0.957 33 H 0.069 0.931 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.079 0.921 38 H 0.103 0.897 39 H 0.110 0.890 40 H 0.102 0.898 41 H 0.066 0.934 42 H 0.154 0.846 43 H 0.132 0.868 44 H 0.164 0.836 45 H 0.248 0.752 46 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 3.539 -23.657 1.588 23.973 hybrid contribution -0.324 2.066 -0.542 2.161 sum 3.215 -21.591 1.045 21.854 Atomic orbital electron populations 1.69823 1.06577 1.25678 1.60247 1.25498 0.96300 1.00889 1.04439 0.85161 0.78407 0.80334 0.76462 1.18908 1.22678 1.22055 1.19633 0.91349 0.85258 1.39856 0.90665 1.43274 1.05247 1.01216 1.88807 1.20488 0.94732 0.84730 0.92889 1.22231 0.99610 0.94882 0.99605 1.21115 0.88694 0.87919 0.97739 0.91341 1.21548 0.94868 1.02413 0.96251 1.21259 0.99382 1.01127 0.94022 1.21656 0.92706 1.01285 1.00023 1.21601 0.98900 0.96261 0.79021 0.85686 1.21925 0.98489 0.93998 1.01868 1.48470 1.40536 1.33134 1.10831 1.21039 0.81548 0.80675 0.86193 1.90667 1.66345 1.72071 1.17830 1.20071 0.97575 0.95523 0.96993 1.20104 0.98856 0.96663 1.02747 1.21977 1.01069 1.01119 1.00558 1.24548 0.94066 0.89566 1.02983 1.84048 1.34955 1.43505 1.46012 1.24314 0.98175 0.95116 0.92600 0.94281 0.80095 0.91840 0.95740 0.93092 0.91311 0.91192 0.90924 0.92118 0.89742 0.88961 0.89821 0.93433 0.84562 0.86844 0.83620 0.75209 0.75709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.83 13.06 21.65 0.28 -59.55 16 2 C -0.08 -4.56 5.50 84.86 0.47 -4.09 16 3 Si 0.97 46.30 29.55 68.60 2.03 48.33 16 4 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 5 H -0.30 -14.55 7.11 99.48 0.71 -13.84 16 6 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 7 C -0.23 -12.53 9.85 84.03 0.83 -11.70 16 8 H 0.08 3.95 7.83 -2.91 -0.02 3.93 16 9 N -0.75 -36.89 5.08 -322.67 -1.64 -38.53 16 10 C 0.18 6.60 2.28 44.28 0.10 6.70 16 11 C -0.12 -4.54 4.93 30.21 0.15 -4.39 16 12 C 0.15 4.50 3.20 44.54 0.14 4.64 16 13 H 0.07 2.36 7.19 -1.74 -0.01 2.35 16 14 C -0.11 -2.65 5.48 30.16 0.17 -2.48 16 15 C -0.12 -2.42 4.95 30.00 0.15 -2.27 16 16 C -0.12 -1.92 5.46 30.15 0.16 -1.76 16 17 C 0.15 2.95 3.14 44.55 0.14 3.09 16 18 H 0.13 1.69 6.21 -1.76 -0.01 1.68 16 19 C -0.12 -3.55 4.91 30.22 0.15 -3.41 16 20 N -0.60 -15.53 2.50 -770.56 -1.93 -17.46 16 21 C 0.52 14.30 7.74 87.69 0.68 14.98 16 22 O -0.59 -21.82 15.58 -3.03 -0.05 -21.87 16 23 C -0.06 -1.18 4.62 29.10 0.13 -1.05 16 24 C -0.18 -4.06 4.66 -19.94 -0.09 -4.16 16 25 C -0.23 -5.24 10.87 22.19 0.24 -5.00 16 26 C -0.04 -0.88 12.09 66.97 0.81 -0.07 16 27 O -0.19 -4.09 10.65 -2.38 -0.03 -4.11 16 28 C -0.03 -0.69 12.01 66.97 0.80 0.11 16 29 H 0.25 14.88 8.31 -92.70 -0.77 14.11 16 30 H 0.37 19.87 7.63 -92.71 -0.71 19.17 16 31 H 0.06 2.33 5.29 -2.58 -0.01 2.32 16 32 H 0.02 1.05 8.19 -2.03 -0.02 1.03 16 33 H 0.05 2.00 8.20 -2.01 -0.02 1.98 16 34 H 0.07 1.48 8.20 -2.01 -0.02 1.46 16 35 H 0.07 1.65 8.20 -2.00 -0.02 1.63 16 36 H 0.07 1.16 8.30 -1.25 -0.01 1.15 16 37 H 0.06 1.45 5.57 -2.78 -0.02 1.43 16 38 H 0.08 1.03 8.20 -2.00 -0.02 1.01 16 39 H 0.09 1.24 8.20 -1.99 -0.02 1.23 16 40 H 0.08 2.24 8.20 -2.02 -0.02 2.23 16 41 H 0.05 1.52 8.02 -2.03 -0.02 1.50 16 42 H 0.14 1.52 7.88 -2.39 -0.02 1.50 16 43 H 0.11 1.92 7.88 -2.39 -0.02 1.90 16 44 H 0.15 3.19 8.06 -2.91 -0.02 3.17 16 45 H 0.23 2.62 8.06 -2.91 -0.02 2.60 16 46 H 0.23 2.80 8.06 -2.91 -0.02 2.78 16 Total: -1.00 -76.15 361.13 4.02 -72.13 By element: Atomic # 1 Polarization: 31.59 SS G_CDS: 0.32 Total: 31.91 kcal Atomic # 6 Polarization: -15.88 SS G_CDS: 5.03 Total: -10.85 kcal Atomic # 7 Polarization: -112.25 SS G_CDS: -3.28 Total: -115.54 kcal Atomic # 8 Polarization: -25.91 SS G_CDS: -0.07 Total: -25.98 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 2.03 Total: 48.33 kcal Total: -76.15 4.02 -72.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039274305.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.652 kcal (2) G-P(sol) polarization free energy of solvation -76.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds