Wall clock time and date at job start Tue Mar 31 2020 12:26:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86795 * 119.99964 * 2 1 4 4 H 1.48501 * 109.47500 * 275.02188 * 3 2 1 5 5 H 1.48511 * 109.47003 * 35.01754 * 3 2 1 6 6 H 1.48494 * 109.47353 * 155.01371 * 3 2 1 7 7 C 1.38810 * 119.99910 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00193 * 337.29357 * 7 2 1 9 9 N 1.36938 * 119.99733 * 157.28849 * 7 2 1 10 10 C 1.44791 * 120.18272 * 325.53199 * 9 7 2 11 11 C 1.52357 * 111.74457 * 265.14293 * 10 9 7 12 12 C 1.51310 * 112.41249 * 284.33742 * 11 10 9 13 13 H 1.09002 * 111.31545 * 186.29318 * 12 11 10 14 14 C 1.54719 * 107.22745 * 308.33563 * 12 11 10 15 15 C 1.54234 * 104.37206 * 89.47030 * 14 12 11 16 16 C 1.51131 * 105.28051 * 11.32800 * 15 14 12 17 17 H 1.09001 * 106.47245 * 122.81743 * 16 15 14 18 18 C 1.49816 * 120.17911 * 145.55545 * 9 7 2 19 19 N 1.48063 * 109.76234 * 8.26032 * 16 15 14 20 20 C 1.34777 * 127.84189 * 155.03456 * 19 16 15 21 21 O 1.21287 * 119.99760 * 179.68116 * 20 19 16 22 22 C 1.50693 * 119.99855 * 359.67788 * 20 19 16 23 23 C 1.52999 * 109.47025 * 180.02562 * 22 20 19 24 24 C 1.50709 * 109.47319 * 180.02562 * 23 22 20 25 25 C 1.41380 * 126.57739 * 89.99575 * 24 23 22 26 26 C 1.34511 * 106.84080 * 179.97438 * 25 24 23 27 27 O 1.34305 * 108.41757 * 0.27035 * 26 25 24 28 28 C 1.34305 * 109.47710 * 359.55718 * 27 26 25 29 29 H 0.97005 * 120.00543 * 0.02562 * 1 2 3 30 30 H 1.09002 * 108.92921 * 25.28280 * 10 9 7 31 31 H 1.09002 * 108.93022 * 143.95531 * 10 9 7 32 32 H 1.09004 * 108.31027 * 164.18278 * 11 10 9 33 33 H 1.09006 * 109.99502 * 45.64656 * 11 10 9 34 34 H 1.08997 * 110.45532 * 208.19170 * 14 12 11 35 35 H 1.09006 * 110.45148 * 330.75188 * 14 12 11 36 36 H 1.09002 * 110.28458 * 130.51580 * 15 14 12 37 37 H 1.09002 * 110.28257 * 252.52127 * 15 14 12 38 38 H 1.08999 * 109.54564 * 30.81550 * 18 9 7 39 39 H 1.09001 * 109.54700 * 270.53531 * 18 9 7 40 40 H 1.09004 * 109.47411 * 60.00105 * 22 20 19 41 41 H 1.09002 * 109.47347 * 299.99829 * 22 20 19 42 42 H 1.08996 * 109.47279 * 60.00371 * 23 22 20 43 43 H 1.09003 * 109.47388 * 300.00224 * 23 22 20 44 44 H 1.08000 * 126.58190 * 0.02562 * 25 24 23 45 45 H 1.08000 * 125.79015 * 180.02562 * 26 25 24 46 46 H 1.08003 * 125.78600 * 180.13581 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3916 2.1077 -1.3947 5 1 1.5046 2.6197 0.8035 6 1 3.5966 1.4119 0.5914 7 6 2.0102 -1.2021 0.0005 8 1 1.5330 -2.1010 0.3620 9 7 3.3000 -1.2483 -0.4573 10 6 3.7141 -0.3981 -1.5537 11 6 3.6242 -1.1196 -2.8926 12 6 4.7515 -2.1091 -3.0915 13 1 4.7339 -2.5332 -4.0954 14 6 6.0756 -1.3557 -2.8209 15 6 6.3173 -1.5375 -1.3085 16 6 5.3215 -2.5862 -0.8692 17 1 5.9003 -3.3923 -0.4183 18 6 4.2901 -2.1792 0.1731 19 7 4.6535 -3.1699 -2.0547 20 6 4.0812 -4.3850 -2.1666 21 8 3.5651 -4.7182 -3.2123 22 6 4.0828 -5.3296 -0.9924 23 6 3.3758 -6.6292 -1.3824 24 6 3.3768 -7.5736 -0.2080 25 6 2.3879 -7.6681 0.7980 26 6 2.7843 -8.6354 1.6445 27 8 3.9572 -9.1248 1.2103 28 6 4.3184 -8.4887 0.0839 29 1 -0.4851 0.8400 -0.0004 30 1 3.0675 0.4789 -1.5848 31 1 4.7406 -0.0742 -1.3819 32 1 3.6684 -0.3744 -3.6869 33 1 2.6752 -1.6507 -2.9668 34 1 6.8902 -1.7997 -3.3929 35 1 5.9692 -0.2987 -3.0652 36 1 7.3362 -1.8795 -1.1271 37 1 6.1340 -0.6013 -0.7813 38 1 3.7740 -3.0659 0.5410 39 1 4.7881 -1.6754 1.0016 40 1 3.5600 -4.8685 -0.1544 41 1 5.1108 -5.5483 -0.7034 42 1 3.8989 -7.0902 -2.2201 43 1 2.3478 -6.4109 -1.6718 44 1 1.4867 -7.0776 0.8721 45 1 2.2519 -8.9603 2.5262 46 1 5.2155 -8.6764 -0.4875 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039354238.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:06 Heat of formation + Delta-G solvation = 21.175259 kcal Electronic energy + Delta-G solvation = -28087.675846 eV Core-core repulsion = 24366.248443 eV Total energy + Delta-G solvation = -3721.427403 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.55321 -40.49142 -38.11248 -34.91604 -34.67583 -32.87589 -31.63122 -31.37338 -31.06989 -29.09337 -27.34048 -26.19824 -24.78367 -23.66869 -21.61834 -21.56489 -21.25476 -20.10635 -19.57074 -18.33083 -17.57525 -16.92319 -16.50668 -15.95632 -15.79717 -15.40586 -15.13968 -14.76355 -14.53851 -14.12234 -13.56621 -13.36079 -13.24886 -13.10787 -12.78855 -12.76604 -12.47676 -12.25623 -12.19985 -12.09557 -11.96084 -11.56681 -11.54416 -11.04011 -10.99508 -10.90252 -10.62509 -10.55147 -10.40740 -10.07802 -9.74315 -9.62269 -9.40044 -9.37072 -8.55697 -8.52554 -8.20020 -6.86631 -5.98297 -3.36250 1.73640 2.57420 3.01619 3.11585 3.29002 3.33619 3.44695 3.48407 4.49392 4.53075 4.66629 4.76963 4.86020 4.96086 5.02270 5.05399 5.18446 5.30721 5.32079 5.34585 5.41653 5.53055 5.61280 5.66296 5.74399 5.78639 5.81488 5.86466 5.93729 6.02551 6.06070 6.07138 6.21453 6.26730 6.29145 6.35263 6.40922 6.48460 6.53222 6.56672 6.71008 6.77625 7.08797 7.09231 7.97584 8.05214 8.32274 8.56438 8.96600 9.70761 10.10953 11.17638 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.013673 B = 0.004363 C = 0.003718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2047.340383 B = 6416.235483 C = 7529.946020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.033 3.967 3 Si 0.881 3.119 4 H -0.287 1.287 5 H -0.304 1.304 6 H -0.271 1.271 7 C -0.262 4.262 8 H 0.076 0.924 9 N -0.599 5.599 10 C 0.136 3.864 11 C -0.153 4.153 12 C 0.140 3.860 13 H 0.084 0.916 14 C -0.128 4.128 15 C -0.121 4.121 16 C 0.122 3.878 17 H 0.058 0.942 18 C 0.134 3.866 19 N -0.597 5.597 20 C 0.543 3.457 21 O -0.553 6.553 22 C -0.129 4.129 23 C -0.034 4.034 24 C -0.171 4.171 25 C -0.204 4.204 26 C -0.047 4.047 27 O -0.181 6.181 28 C -0.047 4.047 29 H 0.262 0.738 30 H 0.052 0.948 31 H 0.046 0.954 32 H 0.056 0.944 33 H 0.072 0.928 34 H 0.066 0.934 35 H 0.082 0.918 36 H 0.072 0.928 37 H 0.086 0.914 38 H 0.057 0.943 39 H 0.037 0.963 40 H 0.099 0.901 41 H 0.086 0.914 42 H 0.075 0.925 43 H 0.081 0.919 44 H 0.150 0.850 45 H 0.201 0.799 46 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.729 -10.861 -0.277 17.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.167 4.167 3 Si 0.712 3.288 4 H -0.216 1.216 5 H -0.232 1.232 6 H -0.196 1.196 7 C -0.390 4.390 8 H 0.093 0.907 9 N -0.324 5.324 10 C 0.010 3.990 11 C -0.194 4.194 12 C 0.037 3.963 13 H 0.103 0.897 14 C -0.166 4.166 15 C -0.159 4.159 16 C 0.017 3.983 17 H 0.076 0.924 18 C 0.009 3.991 19 N -0.330 5.330 20 C 0.333 3.667 21 O -0.431 6.431 22 C -0.169 4.169 23 C -0.072 4.072 24 C -0.172 4.172 25 C -0.223 4.223 26 C -0.114 4.114 27 O -0.077 6.077 28 C -0.115 4.115 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.074 0.926 33 H 0.091 0.909 34 H 0.085 0.915 35 H 0.100 0.900 36 H 0.091 0.909 37 H 0.104 0.896 38 H 0.076 0.924 39 H 0.055 0.945 40 H 0.117 0.883 41 H 0.104 0.896 42 H 0.094 0.906 43 H 0.100 0.900 44 H 0.168 0.832 45 H 0.218 0.782 46 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 13.410 -11.309 -0.660 17.554 hybrid contribution 0.096 1.291 0.042 1.295 sum 13.506 -10.018 -0.617 16.827 Atomic orbital electron populations 1.69877 1.05947 1.26615 1.51820 1.25378 0.95063 0.97649 0.98658 0.86883 0.80467 0.84746 0.76663 1.21580 1.23184 1.19576 1.18734 0.86308 0.94322 1.39658 0.90662 1.44326 1.08153 1.46145 1.33763 1.20863 0.98100 0.93393 0.86681 1.22164 0.99262 0.98125 0.99834 1.21690 0.94859 0.87445 0.92261 0.89746 1.22628 0.96960 1.01108 0.95910 1.21903 0.97775 0.99650 0.96525 1.21355 0.93379 0.96273 0.87294 0.92392 1.21779 0.90145 0.94563 0.92598 1.48933 1.56679 1.13705 1.13680 1.20039 0.76875 0.80403 0.89394 1.90668 1.45633 1.75995 1.30808 1.21646 1.02533 0.95010 0.97691 1.19697 1.02508 0.91528 0.93463 1.20532 0.96248 1.00691 0.99751 1.21876 1.02209 1.01689 0.96530 1.24004 0.86940 0.98729 1.01742 1.84044 1.34346 1.53597 1.35733 1.23838 1.01560 0.96984 0.89088 0.92769 0.92984 0.93618 0.92556 0.90945 0.91534 0.89973 0.90898 0.89575 0.92440 0.94504 0.88300 0.89568 0.90613 0.89996 0.83239 0.78249 0.78384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.53 13.97 55.49 0.78 -26.76 16 2 C 0.03 0.93 5.29 -17.43 -0.09 0.84 16 3 Si 0.88 21.95 24.95 -169.99 -4.24 17.71 16 4 H -0.29 -6.98 6.67 56.52 0.38 -6.60 16 5 H -0.30 -7.73 7.11 56.52 0.40 -7.33 16 6 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.26 -7.19 10.02 -15.06 -0.15 -7.34 16 8 H 0.08 2.26 8.06 -52.49 -0.42 1.84 16 9 N -0.60 -13.60 2.53 -172.70 -0.44 -14.04 16 10 C 0.14 2.83 4.06 -5.28 -0.02 2.81 16 11 C -0.15 -2.93 5.13 -27.91 -0.14 -3.07 16 12 C 0.14 2.28 3.77 -66.68 -0.25 2.03 16 13 H 0.08 1.39 8.02 -51.93 -0.42 0.97 16 14 C -0.13 -1.60 6.02 -25.18 -0.15 -1.75 16 15 C -0.12 -1.50 5.81 -27.03 -0.16 -1.66 16 16 C 0.12 1.79 2.17 -68.43 -0.15 1.64 16 17 H 0.06 0.72 7.55 -51.93 -0.39 0.33 16 18 C 0.13 2.43 6.25 -2.61 -0.02 2.42 16 19 N -0.60 -9.97 2.62 -157.24 -0.41 -10.38 16 20 C 0.54 9.57 7.88 -10.99 -0.09 9.48 16 21 O -0.55 -11.50 16.34 5.55 0.09 -11.41 16 22 C -0.13 -1.82 4.73 -27.89 -0.13 -1.95 16 23 C -0.03 -0.46 5.02 -27.88 -0.14 -0.60 16 24 C -0.17 -2.12 5.42 -104.74 -0.57 -2.69 16 25 C -0.20 -2.49 10.87 -39.70 -0.43 -2.92 16 26 C -0.05 -0.49 12.09 29.41 0.36 -0.13 16 27 O -0.18 -2.06 10.65 5.70 0.06 -2.00 16 28 C -0.05 -0.51 12.01 29.41 0.35 -0.16 16 29 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 30 H 0.05 1.23 3.05 -51.93 -0.16 1.07 16 31 H 0.05 0.84 3.93 -51.93 -0.20 0.63 16 32 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.07 1.68 8.14 -51.93 -0.42 1.25 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.08 0.97 7.39 -51.93 -0.38 0.59 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.09 1.14 6.17 -51.93 -0.32 0.82 16 38 H 0.06 1.06 6.33 -51.93 -0.33 0.73 16 39 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.10 1.49 6.46 -51.93 -0.34 1.16 16 41 H 0.09 1.00 7.93 -51.93 -0.41 0.59 16 42 H 0.08 0.98 8.10 -51.93 -0.42 0.56 16 43 H 0.08 1.27 8.10 -51.93 -0.42 0.85 16 44 H 0.15 1.78 8.06 -52.49 -0.42 1.35 16 45 H 0.20 1.36 8.06 -52.49 -0.42 0.94 16 46 H 0.20 1.49 8.06 -52.48 -0.42 1.06 16 LS Contribution 352.75 15.07 5.32 5.32 Total: -1.00 -33.89 352.75 -7.38 -41.28 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -6.76 Total: 3.35 kcal Atomic # 6 Polarization: -1.27 SS G_CDS: -1.78 Total: -3.05 kcal Atomic # 7 Polarization: -51.11 SS G_CDS: -0.07 Total: -51.18 kcal Atomic # 8 Polarization: -13.57 SS G_CDS: 0.15 Total: -13.41 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.24 Total: 17.71 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -33.89 -7.38 -41.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039354238.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.453 kcal (2) G-P(sol) polarization free energy of solvation -33.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds