Wall clock time and date at job start Tue Mar 31 2020 12:26:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86795 * 119.99964 * 2 1 4 4 H 1.48501 * 109.47500 * 275.02188 * 3 2 1 5 5 H 1.48511 * 109.47003 * 35.01754 * 3 2 1 6 6 H 1.48494 * 109.47353 * 155.01371 * 3 2 1 7 7 C 1.38810 * 119.99910 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00193 * 337.29357 * 7 2 1 9 9 N 1.36938 * 119.99733 * 157.28849 * 7 2 1 10 10 C 1.44791 * 120.18272 * 325.53199 * 9 7 2 11 11 C 1.52357 * 111.74457 * 265.14293 * 10 9 7 12 12 C 1.51310 * 112.41249 * 284.33742 * 11 10 9 13 13 H 1.09002 * 111.31545 * 186.29318 * 12 11 10 14 14 C 1.54719 * 107.22745 * 308.33563 * 12 11 10 15 15 C 1.54234 * 104.37206 * 89.47030 * 14 12 11 16 16 C 1.51131 * 105.28051 * 11.32800 * 15 14 12 17 17 H 1.09001 * 106.47245 * 122.81743 * 16 15 14 18 18 C 1.49816 * 120.17911 * 145.55545 * 9 7 2 19 19 N 1.48063 * 109.76234 * 8.26032 * 16 15 14 20 20 C 1.34777 * 127.84189 * 155.03456 * 19 16 15 21 21 O 1.21287 * 119.99760 * 179.68116 * 20 19 16 22 22 C 1.50693 * 119.99855 * 359.67788 * 20 19 16 23 23 C 1.52999 * 109.47025 * 180.02562 * 22 20 19 24 24 C 1.50709 * 109.47319 * 180.02562 * 23 22 20 25 25 C 1.41380 * 126.57739 * 89.99575 * 24 23 22 26 26 C 1.34511 * 106.84080 * 179.97438 * 25 24 23 27 27 O 1.34305 * 108.41757 * 0.27035 * 26 25 24 28 28 C 1.34305 * 109.47710 * 359.55718 * 27 26 25 29 29 H 0.97005 * 120.00543 * 0.02562 * 1 2 3 30 30 H 1.09002 * 108.92921 * 25.28280 * 10 9 7 31 31 H 1.09002 * 108.93022 * 143.95531 * 10 9 7 32 32 H 1.09004 * 108.31027 * 164.18278 * 11 10 9 33 33 H 1.09006 * 109.99502 * 45.64656 * 11 10 9 34 34 H 1.08997 * 110.45532 * 208.19170 * 14 12 11 35 35 H 1.09006 * 110.45148 * 330.75188 * 14 12 11 36 36 H 1.09002 * 110.28458 * 130.51580 * 15 14 12 37 37 H 1.09002 * 110.28257 * 252.52127 * 15 14 12 38 38 H 1.08999 * 109.54564 * 30.81550 * 18 9 7 39 39 H 1.09001 * 109.54700 * 270.53531 * 18 9 7 40 40 H 1.09004 * 109.47411 * 60.00105 * 22 20 19 41 41 H 1.09002 * 109.47347 * 299.99829 * 22 20 19 42 42 H 1.08996 * 109.47279 * 60.00371 * 23 22 20 43 43 H 1.09003 * 109.47388 * 300.00224 * 23 22 20 44 44 H 1.08000 * 126.58190 * 0.02562 * 25 24 23 45 45 H 1.08000 * 125.79015 * 180.02562 * 26 25 24 46 46 H 1.08003 * 125.78600 * 180.13581 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3916 2.1077 -1.3947 5 1 1.5046 2.6197 0.8035 6 1 3.5966 1.4119 0.5914 7 6 2.0102 -1.2021 0.0005 8 1 1.5330 -2.1010 0.3620 9 7 3.3000 -1.2483 -0.4573 10 6 3.7141 -0.3981 -1.5537 11 6 3.6242 -1.1196 -2.8926 12 6 4.7515 -2.1091 -3.0915 13 1 4.7339 -2.5332 -4.0954 14 6 6.0756 -1.3557 -2.8209 15 6 6.3173 -1.5375 -1.3085 16 6 5.3215 -2.5862 -0.8692 17 1 5.9003 -3.3923 -0.4183 18 6 4.2901 -2.1792 0.1731 19 7 4.6535 -3.1699 -2.0547 20 6 4.0812 -4.3850 -2.1666 21 8 3.5651 -4.7182 -3.2123 22 6 4.0828 -5.3296 -0.9924 23 6 3.3758 -6.6292 -1.3824 24 6 3.3768 -7.5736 -0.2080 25 6 2.3879 -7.6681 0.7980 26 6 2.7843 -8.6354 1.6445 27 8 3.9572 -9.1248 1.2103 28 6 4.3184 -8.4887 0.0839 29 1 -0.4851 0.8400 -0.0004 30 1 3.0675 0.4789 -1.5848 31 1 4.7406 -0.0742 -1.3819 32 1 3.6684 -0.3744 -3.6869 33 1 2.6752 -1.6507 -2.9668 34 1 6.8902 -1.7997 -3.3929 35 1 5.9692 -0.2987 -3.0652 36 1 7.3362 -1.8795 -1.1271 37 1 6.1340 -0.6013 -0.7813 38 1 3.7740 -3.0659 0.5410 39 1 4.7881 -1.6754 1.0016 40 1 3.5600 -4.8685 -0.1544 41 1 5.1108 -5.5483 -0.7034 42 1 3.8989 -7.0902 -2.2201 43 1 2.3478 -6.4109 -1.6718 44 1 1.4867 -7.0776 0.8721 45 1 2.2519 -8.9603 2.5262 46 1 5.2155 -8.6764 -0.4875 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039354238.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:05 Heat of formation + Delta-G solvation = -1.010909 kcal Electronic energy + Delta-G solvation = -28088.637910 eV Core-core repulsion = 24366.248443 eV Total energy + Delta-G solvation = -3722.389467 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -43.43029 -41.80907 -39.52559 -36.58473 -35.82635 -34.22410 -33.61433 -32.65826 -32.11696 -30.03214 -29.00040 -27.58945 -25.96265 -25.45258 -22.86722 -22.64531 -22.46099 -21.18370 -20.91540 -19.65031 -18.71005 -18.51633 -18.04394 -17.27479 -16.89992 -16.73697 -16.68898 -16.02710 -15.70546 -15.36346 -15.14582 -14.83425 -14.66229 -14.43280 -14.24138 -13.96779 -13.80165 -13.68397 -13.42783 -13.33816 -13.11351 -12.97934 -12.95005 -12.58650 -12.39671 -12.28901 -12.02864 -11.96446 -11.79999 -11.71880 -11.49946 -10.97678 -10.90558 -10.55608 -10.54526 -9.59028 -9.42057 -8.78084 -8.19162 -5.53220 0.89162 1.30312 1.40808 1.52701 1.59040 1.67079 2.08643 2.32937 2.42596 3.02064 3.27966 3.46645 3.66390 3.80228 3.88412 4.00438 4.01885 4.06488 4.16876 4.21146 4.24797 4.32391 4.42257 4.47971 4.51621 4.59159 4.67663 4.77663 4.80634 4.85446 4.91563 4.97563 4.99209 5.06648 5.08933 5.14813 5.21346 5.22455 5.31591 5.34988 5.48183 5.53359 5.57900 5.92184 6.11769 6.21793 6.67636 6.98421 7.19875 7.63844 8.04874 9.01559 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.013673 B = 0.004363 C = 0.003718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2047.340383 B = 6416.235483 C = 7529.946020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.032 4.032 3 Si 0.955 3.045 4 H -0.278 1.278 5 H -0.314 1.314 6 H -0.246 1.246 7 C -0.250 4.250 8 H 0.027 0.973 9 N -0.612 5.612 10 C 0.132 3.868 11 C -0.146 4.146 12 C 0.133 3.867 13 H 0.077 0.923 14 C -0.116 4.116 15 C -0.116 4.116 16 C 0.119 3.881 17 H 0.094 0.906 18 C 0.129 3.871 19 N -0.601 5.601 20 C 0.531 3.469 21 O -0.596 6.596 22 C -0.117 4.117 23 C -0.025 4.025 24 C -0.195 4.195 25 C -0.238 4.238 26 C -0.034 4.034 27 O -0.184 6.184 28 C -0.033 4.033 29 H 0.260 0.740 30 H 0.025 0.975 31 H 0.088 0.912 32 H 0.076 0.924 33 H 0.013 0.987 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.115 0.885 37 H 0.084 0.916 38 H 0.044 0.956 39 H 0.057 0.943 40 H 0.084 0.916 41 H 0.123 0.877 42 H 0.082 0.918 43 H 0.046 0.954 44 H 0.138 0.862 45 H 0.234 0.766 46 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.751 -10.764 0.228 21.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.227 4.227 3 Si 0.784 3.216 4 H -0.205 1.205 5 H -0.243 1.243 6 H -0.169 1.169 7 C -0.380 4.380 8 H 0.045 0.955 9 N -0.337 5.337 10 C 0.007 3.993 11 C -0.187 4.187 12 C 0.030 3.970 13 H 0.096 0.904 14 C -0.154 4.154 15 C -0.154 4.154 16 C 0.015 3.985 17 H 0.112 0.888 18 C 0.005 3.995 19 N -0.333 5.333 20 C 0.322 3.678 21 O -0.478 6.478 22 C -0.156 4.156 23 C -0.063 4.063 24 C -0.197 4.197 25 C -0.257 4.257 26 C -0.101 4.101 27 O -0.080 6.080 28 C -0.100 4.100 29 H 0.069 0.931 30 H 0.043 0.957 31 H 0.105 0.895 32 H 0.095 0.905 33 H 0.032 0.968 34 H 0.113 0.887 35 H 0.113 0.887 36 H 0.133 0.867 37 H 0.102 0.898 38 H 0.062 0.938 39 H 0.075 0.925 40 H 0.102 0.898 41 H 0.141 0.859 42 H 0.100 0.900 43 H 0.065 0.935 44 H 0.156 0.844 45 H 0.250 0.750 46 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 18.500 -11.214 -0.142 21.634 hybrid contribution -1.556 1.122 -0.138 1.924 sum 16.944 -10.092 -0.281 19.723 Atomic orbital electron populations 1.70043 1.08039 1.27331 1.54835 1.26091 0.95679 1.01646 0.99252 0.85689 0.79672 0.79275 0.76983 1.20507 1.24277 1.16909 1.18592 0.88581 0.92641 1.38222 0.95494 1.44451 1.07309 1.47195 1.34745 1.21007 0.99490 0.92223 0.86593 1.22082 0.97855 0.98854 0.99936 1.21794 0.96076 0.86971 0.92169 0.90433 1.22615 0.94893 1.01338 0.96576 1.21989 0.98949 0.98592 0.95851 1.21507 0.92724 0.98441 0.85837 0.88771 1.22003 0.89995 0.93148 0.94333 1.49115 1.56098 1.13396 1.14675 1.20715 0.76139 0.81263 0.89687 1.90637 1.47373 1.77089 1.32679 1.21607 1.04425 0.94142 0.95469 1.19517 1.00457 0.91902 0.94418 1.20480 0.97574 1.01828 0.99788 1.22002 1.02588 1.03201 0.97925 1.24559 0.86363 0.97341 1.01853 1.84077 1.34504 1.53546 1.35878 1.24379 1.01739 0.95360 0.88506 0.93073 0.95720 0.89471 0.90512 0.96758 0.88667 0.88715 0.86696 0.89796 0.93786 0.92490 0.89806 0.85931 0.89964 0.93475 0.84376 0.74951 0.75015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.80 13.97 21.65 0.30 -61.50 16 2 C -0.03 -1.86 5.29 84.86 0.45 -1.42 16 3 Si 0.96 46.03 24.95 68.60 1.71 47.74 16 4 H -0.28 -12.79 6.67 99.48 0.66 -12.13 16 5 H -0.31 -15.49 7.11 99.48 0.71 -14.78 16 6 H -0.25 -10.70 7.11 99.48 0.71 -10.00 16 7 C -0.25 -14.40 10.02 84.03 0.84 -13.56 16 8 H 0.03 1.77 8.06 -2.91 -0.02 1.75 16 9 N -0.61 -27.73 2.53 -700.30 -1.77 -29.50 16 10 C 0.13 5.31 4.06 86.49 0.35 5.66 16 11 C -0.15 -5.58 5.13 29.83 0.15 -5.42 16 12 C 0.13 4.08 3.77 44.61 0.17 4.25 16 13 H 0.08 2.48 8.02 -2.39 -0.02 2.46 16 14 C -0.12 -2.32 6.02 31.60 0.19 -2.13 16 15 C -0.12 -2.20 5.81 30.40 0.18 -2.02 16 16 C 0.12 3.05 2.17 43.81 0.10 3.15 16 17 H 0.09 1.83 7.55 -2.39 -0.02 1.81 16 18 C 0.13 4.46 6.25 85.46 0.53 5.00 16 19 N -0.60 -19.23 2.62 -769.78 -2.01 -21.24 16 20 C 0.53 18.88 7.88 87.65 0.69 19.57 16 21 O -0.60 -25.89 16.34 -3.05 -0.05 -25.94 16 22 C -0.12 -3.27 4.73 29.85 0.14 -3.13 16 23 C -0.02 -0.70 5.02 29.85 0.15 -0.55 16 24 C -0.20 -4.81 5.42 -19.94 -0.11 -4.92 16 25 C -0.24 -5.95 10.87 22.19 0.24 -5.71 16 26 C -0.03 -0.67 12.09 66.97 0.81 0.14 16 27 O -0.18 -3.77 10.65 -2.52 -0.03 -3.80 16 28 C -0.03 -0.63 12.01 66.97 0.80 0.17 16 29 H 0.26 15.94 8.31 -92.70 -0.77 15.17 16 30 H 0.02 1.14 3.05 -2.39 -0.01 1.13 16 31 H 0.09 2.81 3.93 -2.39 -0.01 2.80 16 32 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 33 H 0.01 0.67 8.14 -2.38 -0.02 0.65 16 34 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.09 1.71 7.39 -2.38 -0.02 1.69 16 36 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.08 1.68 6.17 -2.39 -0.01 1.67 16 38 H 0.04 1.62 6.33 -2.39 -0.02 1.61 16 39 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 40 H 0.08 2.62 6.46 -2.39 -0.02 2.61 16 41 H 0.12 2.49 7.93 -2.39 -0.02 2.47 16 42 H 0.08 2.15 8.10 -2.39 -0.02 2.13 16 43 H 0.05 1.61 8.10 -2.39 -0.02 1.59 16 44 H 0.14 3.63 8.06 -2.91 -0.02 3.61 16 45 H 0.23 2.67 8.06 -2.91 -0.02 2.65 16 46 H 0.23 2.62 8.06 -2.91 -0.02 2.60 16 Total: -1.00 -81.39 352.75 4.78 -76.60 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: 0.94 Total: 18.55 kcal Atomic # 6 Polarization: -6.59 SS G_CDS: 5.69 Total: -0.91 kcal Atomic # 7 Polarization: -108.76 SS G_CDS: -3.48 Total: -112.24 kcal Atomic # 8 Polarization: -29.66 SS G_CDS: -0.08 Total: -29.74 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 1.71 Total: 47.74 kcal Total: -81.39 4.78 -76.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039354238.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.593 kcal (2) G-P(sol) polarization free energy of solvation -81.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds