Wall clock time and date at job start Tue Mar 31 2020 12:26:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 120.00252 * 2 1 4 4 H 1.48496 * 109.47268 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46911 * 300.00683 * 3 2 1 6 6 H 1.48498 * 109.47027 * 60.00175 * 3 2 1 7 7 C 1.38819 * 119.99760 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99632 * 197.19545 * 7 2 1 9 9 N 1.36932 * 119.99903 * 17.18792 * 7 2 1 10 10 C 1.46934 * 120.69785 * 207.23001 * 9 7 2 11 11 C 1.53199 * 108.92672 * 234.19442 * 10 9 7 12 12 C 1.53175 * 109.27001 * 304.76769 * 11 10 9 13 13 C 1.52228 * 109.65446 * 60.15985 * 12 11 10 14 14 C 1.53942 * 110.58343 * 63.63100 * 13 12 11 15 15 C 1.54143 * 104.87519 * 139.53638 * 14 13 12 16 16 N 1.47549 * 107.06425 * 1.72247 * 15 14 13 17 17 C 1.34779 * 126.98231 * 154.77795 * 16 15 14 18 18 O 1.21285 * 119.99421 * 180.02562 * 17 16 15 19 19 C 1.50700 * 120.00111 * 0.02562 * 17 16 15 20 20 C 1.50700 * 109.46790 * 180.02562 * 19 17 16 21 21 C 1.41376 * 126.57985 * 269.70977 * 20 19 17 22 22 C 1.34520 * 106.84098 * 179.83741 * 21 20 19 23 23 O 1.34304 * 108.41979 * 0.43365 * 22 21 20 24 24 C 1.34306 * 109.47563 * 359.71863 * 23 22 21 25 25 C 1.48244 * 106.03141 * 334.74880 * 16 15 14 26 26 C 1.47077 * 120.70479 * 27.25965 * 9 7 2 27 27 H 0.96996 * 119.99990 * 359.97438 * 1 2 3 28 28 H 1.08994 * 109.56130 * 114.36490 * 10 9 7 29 29 H 1.08998 * 109.65462 * 354.07842 * 10 9 7 30 30 H 1.08998 * 109.50223 * 184.83155 * 11 10 9 31 31 H 1.08999 * 109.53682 * 64.72145 * 11 10 9 32 32 H 1.09001 * 109.44045 * 300.10335 * 12 11 10 33 33 H 1.09000 * 109.41068 * 180.19860 * 12 11 10 34 34 H 1.09008 * 110.35544 * 20.68866 * 14 13 12 35 35 H 1.08998 * 110.35916 * 258.38641 * 14 13 12 36 36 H 1.08997 * 109.91715 * 121.07789 * 15 14 13 37 37 H 1.09002 * 109.91543 * 242.36634 * 15 14 13 38 38 H 1.09000 * 109.47299 * 300.00704 * 19 17 16 39 39 H 1.08998 * 109.47125 * 60.00596 * 19 17 16 40 40 H 1.08000 * 126.58323 * 0.02562 * 21 20 19 41 41 H 1.07994 * 125.79059 * 180.11964 * 22 21 20 42 42 H 1.07994 * 125.79200 * 180.02562 * 24 23 22 43 43 H 1.09007 * 110.66759 * 280.10153 * 25 16 15 44 44 H 1.08997 * 110.81097 * 157.03943 * 25 16 15 45 45 H 1.08998 * 109.57909 * 7.73881 * 26 9 7 46 46 H 1.08998 * 109.57551 * 247.34740 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3964 -1.2124 6 1 1.8916 2.3963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0540 -1.2232 0.2760 9 7 1.3714 -2.3614 -0.3515 10 6 1.8246 -3.6565 0.1742 11 6 2.0854 -4.6056 -0.9997 12 6 0.8242 -4.6989 -1.8641 13 6 0.4677 -3.3195 -2.4002 14 6 1.5775 -2.7969 -3.3303 15 6 0.8304 -2.1184 -4.4954 16 7 -0.6122 -2.2214 -4.2032 17 6 -1.5898 -1.4078 -4.6492 18 8 -2.7414 -1.6109 -4.3273 19 6 -1.2521 -0.2461 -5.5477 20 6 -2.5135 0.4993 -5.9004 21 6 -3.3534 0.2557 -7.0111 22 6 -4.3612 1.1439 -6.9398 23 8 -4.1719 1.9144 -5.8562 24 6 -3.0529 1.5281 -5.2220 25 6 -0.7677 -3.4018 -3.3201 26 6 0.2175 -2.3366 -1.2631 27 1 -0.4850 0.8400 0.0004 28 1 1.0544 -4.0779 0.8200 29 1 2.7438 -3.5195 0.7438 30 1 2.3393 -5.5947 -0.6186 31 1 2.9109 -4.2240 -1.6006 32 1 -0.0011 -5.0785 -1.2617 33 1 1.0061 -5.3765 -2.6982 34 1 2.1839 -3.6243 -3.6992 35 1 2.2013 -2.0725 -2.8067 36 1 1.1217 -1.0702 -4.5629 37 1 1.0574 -2.6305 -5.4305 38 1 -0.5660 0.4252 -5.0313 39 1 -0.7816 -0.6161 -6.4586 40 1 -3.2146 -0.5005 -7.7695 41 1 -5.1805 1.2270 -7.6385 42 1 -2.6540 1.9683 -4.3201 43 1 -0.7528 -4.3229 -3.9029 44 1 -1.6864 -3.3314 -2.7378 45 1 0.0940 -1.3325 -1.6688 46 1 -0.6825 -2.6267 -0.7210 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040176498.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:34 Heat of formation + Delta-G solvation = 4.182458 kcal Electronic energy + Delta-G solvation = -27927.708317 eV Core-core repulsion = 24205.544051 eV Total energy + Delta-G solvation = -3722.164266 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.45177 -40.00078 -38.22903 -35.68662 -33.86378 -33.14113 -31.33747 -30.25218 -29.88277 -29.18550 -27.88393 -25.42619 -25.12117 -22.79587 -22.20028 -21.52562 -20.90734 -20.32303 -19.01855 -18.02806 -17.23930 -16.87699 -16.51303 -15.73964 -15.61376 -15.15297 -14.72058 -14.50676 -14.26882 -14.04146 -13.64985 -13.49963 -13.08399 -12.80188 -12.72160 -12.60253 -12.41833 -12.30835 -12.11819 -11.95535 -11.77081 -11.38781 -11.08713 -10.99025 -10.84561 -10.63677 -10.36191 -10.11754 -10.09553 -9.85502 -9.79738 -9.59500 -9.41405 -9.31836 -8.49669 -8.43285 -8.27601 -6.68332 -5.79508 -3.21565 1.87065 2.60235 2.99419 3.22906 3.32748 3.42057 3.43279 3.43533 4.46482 4.78774 4.82286 4.87566 5.03378 5.08761 5.21695 5.30210 5.39451 5.46450 5.50622 5.57193 5.57731 5.66874 5.71000 5.74997 5.84917 6.00872 6.05112 6.08384 6.18215 6.23636 6.25779 6.27418 6.34729 6.47745 6.52228 6.55626 6.69684 6.80253 6.85898 6.93299 7.00472 7.19412 7.35601 7.67775 7.79163 7.91648 8.43063 8.52979 9.19636 9.83811 10.41216 11.28409 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.012431 B = 0.004640 C = 0.003688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2251.932493 B = 6032.761322 C = 7589.571092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.004 3.996 3 Si 0.895 3.105 4 H -0.277 1.277 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.252 4.252 8 H 0.066 0.934 9 N -0.590 5.590 10 C 0.143 3.857 11 C -0.133 4.133 12 C -0.094 4.094 13 C -0.093 4.093 14 C -0.115 4.115 15 C 0.102 3.898 16 N -0.615 5.615 17 C 0.534 3.466 18 O -0.538 6.538 19 C -0.067 4.067 20 C -0.162 4.162 21 C -0.198 4.198 22 C -0.050 4.050 23 O -0.178 6.178 24 C -0.022 4.022 25 C 0.117 3.883 26 C 0.191 3.809 27 H 0.253 0.747 28 H 0.016 0.984 29 H 0.052 0.948 30 H 0.049 0.951 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.048 0.952 34 H 0.063 0.937 35 H 0.093 0.907 36 H 0.070 0.930 37 H 0.059 0.941 38 H 0.102 0.898 39 H 0.098 0.902 40 H 0.144 0.856 41 H 0.199 0.801 42 H 0.202 0.798 43 H 0.061 0.939 44 H 0.080 0.920 45 H 0.091 0.909 46 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.521 -3.465 -13.717 14.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.195 4.195 3 Si 0.725 3.275 4 H -0.202 1.202 5 H -0.216 1.216 6 H -0.217 1.217 7 C -0.382 4.382 8 H 0.083 0.917 9 N -0.312 5.312 10 C 0.017 3.983 11 C -0.172 4.172 12 C -0.132 4.132 13 C -0.096 4.096 14 C -0.153 4.153 15 C -0.021 4.021 16 N -0.349 5.349 17 C 0.323 3.677 18 O -0.414 6.414 19 C -0.106 4.106 20 C -0.164 4.164 21 C -0.217 4.217 22 C -0.118 4.118 23 O -0.073 6.073 24 C -0.090 4.090 25 C -0.006 4.006 26 C 0.065 3.935 27 H 0.063 0.937 28 H 0.034 0.966 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.066 0.934 34 H 0.082 0.918 35 H 0.111 0.889 36 H 0.089 0.911 37 H 0.077 0.923 38 H 0.120 0.880 39 H 0.116 0.884 40 H 0.162 0.838 41 H 0.216 0.784 42 H 0.219 0.781 43 H 0.079 0.921 44 H 0.099 0.901 45 H 0.109 0.891 46 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges -1.504 -3.108 -13.471 13.906 hybrid contribution 0.586 0.619 -0.045 0.853 sum -0.918 -2.489 -13.515 13.773 Atomic orbital electron populations 1.70051 1.05160 1.25320 1.53676 1.25013 0.95172 0.98229 1.01048 0.86329 0.79440 0.84344 0.77343 1.20241 1.21630 1.21745 1.19191 0.92616 0.84771 1.41591 0.91659 1.44063 1.35170 1.01304 1.50672 1.20907 0.97420 0.87089 0.92929 1.22023 0.97334 0.98890 0.98945 1.21247 0.98235 0.95152 0.98530 1.21862 0.93196 0.97536 0.97001 1.22424 0.97731 1.00497 0.94667 1.22180 0.80288 1.01293 0.98334 1.48758 1.07241 1.29166 1.49752 1.20078 0.84346 0.82591 0.80706 1.90697 1.19551 1.72625 1.58550 1.19956 0.95420 0.95359 0.99906 1.19800 0.99519 0.99263 0.97801 1.21624 0.96670 1.02554 1.00887 1.23886 1.01886 0.94835 0.91167 1.84056 1.38762 1.50903 1.33593 1.23901 0.86945 0.99075 0.99068 1.22410 0.99919 0.86851 0.91390 1.20585 0.88311 0.97579 0.86979 0.93708 0.96650 0.92987 0.93229 0.92220 0.92549 0.93364 0.91829 0.88870 0.91113 0.92279 0.88010 0.88384 0.83843 0.78425 0.78124 0.92072 0.90129 0.89131 0.96675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.73 11.17 55.49 0.62 -25.11 16 2 C 0.00 0.11 4.92 -17.43 -0.09 0.03 16 3 Si 0.90 21.06 29.59 -169.99 -5.03 16.03 16 4 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 7 C -0.25 -6.63 9.60 -15.06 -0.14 -6.77 16 8 H 0.07 1.70 7.89 -52.49 -0.41 1.28 16 9 N -0.59 -14.09 2.63 -172.69 -0.45 -14.54 16 10 C 0.14 2.89 6.49 -3.70 -0.02 2.86 16 11 C -0.13 -2.15 5.92 -26.54 -0.16 -2.31 16 12 C -0.09 -1.47 4.54 -27.03 -0.12 -1.59 16 13 C -0.09 -1.64 0.57 -154.08 -0.09 -1.73 16 14 C -0.12 -1.81 5.06 -25.64 -0.13 -1.94 16 15 C 0.10 1.43 6.76 -2.87 -0.02 1.41 16 16 N -0.62 -10.20 3.26 -169.95 -0.55 -10.75 16 17 C 0.53 9.41 7.88 -10.98 -0.09 9.33 16 18 O -0.54 -11.55 16.25 5.55 0.09 -11.46 16 19 C -0.07 -0.92 5.30 -29.03 -0.15 -1.07 16 20 C -0.16 -2.35 4.66 -104.74 -0.49 -2.84 16 21 C -0.20 -2.56 10.87 -39.70 -0.43 -2.99 16 22 C -0.05 -0.60 12.09 29.42 0.36 -0.24 16 23 O -0.18 -2.49 10.65 5.70 0.06 -2.43 16 24 C -0.02 -0.32 12.01 29.42 0.35 0.03 16 25 C 0.12 1.98 5.95 -2.43 -0.01 1.97 16 26 C 0.19 4.40 3.83 -4.05 -0.02 4.38 16 27 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 28 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.05 1.03 7.94 -51.93 -0.41 0.62 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.97 7.28 -51.93 -0.38 0.59 16 32 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.05 0.65 8.11 -51.93 -0.42 0.23 16 34 H 0.06 0.86 7.65 -51.92 -0.40 0.47 16 35 H 0.09 1.73 7.57 -51.93 -0.39 1.34 16 36 H 0.07 0.95 7.55 -51.93 -0.39 0.56 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.10 1.32 7.91 -51.93 -0.41 0.91 16 39 H 0.10 1.09 8.14 -51.93 -0.42 0.66 16 40 H 0.14 1.56 8.06 -52.49 -0.42 1.14 16 41 H 0.20 1.50 8.06 -52.49 -0.42 1.08 16 42 H 0.20 2.58 8.06 -52.49 -0.42 2.15 16 43 H 0.06 0.90 8.02 -51.92 -0.42 0.49 16 44 H 0.08 1.55 7.73 -51.93 -0.40 1.14 16 45 H 0.09 2.37 6.06 -51.93 -0.31 2.05 16 46 H 0.02 0.39 8.11 -51.93 -0.42 -0.03 16 LS Contribution 366.32 15.07 5.52 5.52 Total: -1.00 -32.52 366.32 -8.29 -40.81 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -7.29 Total: 3.40 kcal Atomic # 6 Polarization: -0.22 SS G_CDS: -1.25 Total: -1.47 kcal Atomic # 7 Polarization: -50.01 SS G_CDS: -0.39 Total: -50.40 kcal Atomic # 8 Polarization: -14.05 SS G_CDS: 0.15 Total: -13.90 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.03 Total: 16.03 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.52 -8.29 -40.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040176498.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.994 kcal (2) G-P(sol) polarization free energy of solvation -32.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.812 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds