Wall clock time and date at job start Tue Mar 31 2020 12:26:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 120.00252 * 2 1 4 4 H 1.48496 * 109.47268 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46911 * 300.00683 * 3 2 1 6 6 H 1.48498 * 109.47027 * 60.00175 * 3 2 1 7 7 C 1.38819 * 119.99760 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99632 * 197.19545 * 7 2 1 9 9 N 1.36932 * 119.99903 * 17.18792 * 7 2 1 10 10 C 1.46934 * 120.69785 * 207.23001 * 9 7 2 11 11 C 1.53199 * 108.92672 * 234.19442 * 10 9 7 12 12 C 1.53175 * 109.27001 * 304.76769 * 11 10 9 13 13 C 1.52228 * 109.65446 * 60.15985 * 12 11 10 14 14 C 1.53942 * 110.58343 * 63.63100 * 13 12 11 15 15 C 1.54143 * 104.87519 * 139.53638 * 14 13 12 16 16 N 1.47549 * 107.06425 * 1.72247 * 15 14 13 17 17 C 1.34779 * 126.98231 * 154.77795 * 16 15 14 18 18 O 1.21285 * 119.99421 * 180.02562 * 17 16 15 19 19 C 1.50700 * 120.00111 * 0.02562 * 17 16 15 20 20 C 1.50700 * 109.46790 * 180.02562 * 19 17 16 21 21 C 1.41376 * 126.57985 * 269.70977 * 20 19 17 22 22 C 1.34520 * 106.84098 * 179.83741 * 21 20 19 23 23 O 1.34304 * 108.41979 * 0.43365 * 22 21 20 24 24 C 1.34306 * 109.47563 * 359.71863 * 23 22 21 25 25 C 1.48244 * 106.03141 * 334.74880 * 16 15 14 26 26 C 1.47077 * 120.70479 * 27.25965 * 9 7 2 27 27 H 0.96996 * 119.99990 * 359.97438 * 1 2 3 28 28 H 1.08994 * 109.56130 * 114.36490 * 10 9 7 29 29 H 1.08998 * 109.65462 * 354.07842 * 10 9 7 30 30 H 1.08998 * 109.50223 * 184.83155 * 11 10 9 31 31 H 1.08999 * 109.53682 * 64.72145 * 11 10 9 32 32 H 1.09001 * 109.44045 * 300.10335 * 12 11 10 33 33 H 1.09000 * 109.41068 * 180.19860 * 12 11 10 34 34 H 1.09008 * 110.35544 * 20.68866 * 14 13 12 35 35 H 1.08998 * 110.35916 * 258.38641 * 14 13 12 36 36 H 1.08997 * 109.91715 * 121.07789 * 15 14 13 37 37 H 1.09002 * 109.91543 * 242.36634 * 15 14 13 38 38 H 1.09000 * 109.47299 * 300.00704 * 19 17 16 39 39 H 1.08998 * 109.47125 * 60.00596 * 19 17 16 40 40 H 1.08000 * 126.58323 * 0.02562 * 21 20 19 41 41 H 1.07994 * 125.79059 * 180.11964 * 22 21 20 42 42 H 1.07994 * 125.79200 * 180.02562 * 24 23 22 43 43 H 1.09007 * 110.66759 * 280.10153 * 25 16 15 44 44 H 1.08997 * 110.81097 * 157.03943 * 25 16 15 45 45 H 1.08998 * 109.57909 * 7.73881 * 26 9 7 46 46 H 1.08998 * 109.57551 * 247.34740 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3964 -1.2124 6 1 1.8916 2.3963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0540 -1.2232 0.2760 9 7 1.3714 -2.3614 -0.3515 10 6 1.8246 -3.6565 0.1742 11 6 2.0854 -4.6056 -0.9997 12 6 0.8242 -4.6989 -1.8641 13 6 0.4677 -3.3195 -2.4002 14 6 1.5775 -2.7969 -3.3303 15 6 0.8304 -2.1184 -4.4954 16 7 -0.6122 -2.2214 -4.2032 17 6 -1.5898 -1.4078 -4.6492 18 8 -2.7414 -1.6109 -4.3273 19 6 -1.2521 -0.2461 -5.5477 20 6 -2.5135 0.4993 -5.9004 21 6 -3.3534 0.2557 -7.0111 22 6 -4.3612 1.1439 -6.9398 23 8 -4.1719 1.9144 -5.8562 24 6 -3.0529 1.5281 -5.2220 25 6 -0.7677 -3.4018 -3.3201 26 6 0.2175 -2.3366 -1.2631 27 1 -0.4850 0.8400 0.0004 28 1 1.0544 -4.0779 0.8200 29 1 2.7438 -3.5195 0.7438 30 1 2.3393 -5.5947 -0.6186 31 1 2.9109 -4.2240 -1.6006 32 1 -0.0011 -5.0785 -1.2617 33 1 1.0061 -5.3765 -2.6982 34 1 2.1839 -3.6243 -3.6992 35 1 2.2013 -2.0725 -2.8067 36 1 1.1217 -1.0702 -4.5629 37 1 1.0574 -2.6305 -5.4305 38 1 -0.5660 0.4252 -5.0313 39 1 -0.7816 -0.6161 -6.4586 40 1 -3.2146 -0.5005 -7.7695 41 1 -5.1805 1.2270 -7.6385 42 1 -2.6540 1.9683 -4.3201 43 1 -0.7528 -4.3229 -3.9029 44 1 -1.6864 -3.3314 -2.7378 45 1 0.0940 -1.3325 -1.6688 46 1 -0.6825 -2.6267 -0.7210 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040176498.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:33 Heat of formation + Delta-G solvation = -15.342846 kcal Electronic energy + Delta-G solvation = -27928.554998 eV Core-core repulsion = 24205.544051 eV Total energy + Delta-G solvation = -3723.010947 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.46645 -41.37686 -39.68964 -37.23557 -35.00570 -34.86222 -32.87383 -31.72404 -31.20245 -30.47107 -29.06133 -27.32243 -26.55347 -24.06713 -23.90697 -22.49745 -22.32444 -21.55203 -20.30310 -19.52026 -18.59549 -18.30749 -17.93484 -16.93813 -16.84385 -16.82245 -16.18920 -15.74363 -15.57666 -15.51145 -15.27585 -14.96491 -14.55055 -14.07735 -14.01470 -13.94453 -13.68642 -13.61856 -13.47100 -13.30014 -13.19741 -12.89595 -12.69225 -12.48244 -12.37789 -12.33475 -12.05172 -11.76122 -11.59968 -11.36610 -11.19049 -11.01629 -10.98747 -10.54578 -10.51270 -9.60102 -9.45558 -8.66551 -7.85214 -5.30187 0.84238 1.43296 1.46428 1.54769 1.56399 1.67149 2.18734 2.30497 2.50909 3.27396 3.49106 3.71060 3.78895 3.87717 3.89807 4.00233 4.05531 4.14612 4.34683 4.36915 4.40319 4.48541 4.52023 4.55195 4.65302 4.71253 4.76583 4.83541 4.89532 4.93354 5.03729 5.05369 5.09311 5.19238 5.25274 5.26218 5.30113 5.43540 5.49130 5.54906 5.57988 5.63736 5.73245 5.79981 6.18139 6.39307 6.62875 7.15692 7.19392 7.88776 8.41063 9.20322 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.012431 B = 0.004640 C = 0.003688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2251.932493 B = 6032.761322 C = 7589.571092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.049 4.049 3 Si 0.958 3.042 4 H -0.261 1.261 5 H -0.289 1.289 6 H -0.299 1.299 7 C -0.252 4.252 8 H 0.069 0.931 9 N -0.605 5.605 10 C 0.134 3.866 11 C -0.119 4.119 12 C -0.091 4.091 13 C -0.088 4.088 14 C -0.108 4.108 15 C 0.102 3.898 16 N -0.619 5.619 17 C 0.525 3.475 18 O -0.588 6.588 19 C -0.058 4.058 20 C -0.177 4.177 21 C -0.216 4.216 22 C -0.044 4.044 23 O -0.191 6.191 24 C -0.050 4.050 25 C 0.119 3.881 26 C 0.207 3.793 27 H 0.245 0.755 28 H 0.002 0.998 29 H 0.052 0.948 30 H 0.082 0.918 31 H 0.067 0.933 32 H 0.046 0.954 33 H 0.090 0.910 34 H 0.100 0.900 35 H 0.061 0.939 36 H 0.073 0.927 37 H 0.103 0.897 38 H 0.106 0.894 39 H 0.133 0.867 40 H 0.164 0.836 41 H 0.240 0.760 42 H 0.203 0.797 43 H 0.097 0.903 44 H 0.043 0.957 45 H 0.053 0.947 46 H -0.035 1.035 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.581 -5.006 -16.518 17.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.244 4.244 3 Si 0.786 3.214 4 H -0.185 1.185 5 H -0.215 1.215 6 H -0.227 1.227 7 C -0.383 4.383 8 H 0.087 0.913 9 N -0.328 5.328 10 C 0.009 3.991 11 C -0.158 4.158 12 C -0.129 4.129 13 C -0.090 4.090 14 C -0.146 4.146 15 C -0.020 4.020 16 N -0.352 5.352 17 C 0.315 3.685 18 O -0.469 6.469 19 C -0.097 4.097 20 C -0.178 4.178 21 C -0.234 4.234 22 C -0.110 4.110 23 O -0.087 6.087 24 C -0.118 4.118 25 C -0.004 4.004 26 C 0.081 3.919 27 H 0.054 0.946 28 H 0.020 0.980 29 H 0.071 0.929 30 H 0.100 0.900 31 H 0.086 0.914 32 H 0.065 0.935 33 H 0.109 0.891 34 H 0.119 0.881 35 H 0.080 0.920 36 H 0.092 0.908 37 H 0.121 0.879 38 H 0.124 0.876 39 H 0.151 0.849 40 H 0.182 0.818 41 H 0.256 0.744 42 H 0.219 0.781 43 H 0.115 0.885 44 H 0.062 0.938 45 H 0.072 0.928 46 H -0.017 1.017 Dipole moment (debyes) X Y Z Total from point charges 0.665 -4.682 -16.276 16.949 hybrid contribution -0.092 1.040 0.933 1.400 sum 0.573 -3.641 -15.343 15.780 Atomic orbital electron populations 1.70245 1.06847 1.25345 1.55880 1.25722 0.95710 1.01307 1.01643 0.85344 0.79000 0.80354 0.76658 1.18533 1.21544 1.22696 1.19524 0.92844 0.85816 1.40080 0.91289 1.44324 1.34988 1.02138 1.51347 1.21128 0.96751 0.86397 0.94862 1.21888 0.97705 0.99124 0.97095 1.21275 0.97650 0.94262 0.99717 1.21649 0.94651 0.97376 0.95346 1.22358 0.96893 1.00939 0.94378 1.22394 0.78109 1.02143 0.99376 1.48915 1.08442 1.28745 1.49060 1.20791 0.83817 0.83146 0.80716 1.90665 1.21681 1.73969 1.60599 1.19979 0.95473 0.93803 1.00460 1.20102 1.00112 0.99176 0.98459 1.21956 0.96799 1.03579 1.01109 1.24755 1.02359 0.93485 0.90420 1.84048 1.38603 1.51608 1.34406 1.24094 0.87733 1.00140 0.99811 1.22395 0.97852 0.88609 0.91582 1.20235 0.86356 0.97170 0.88104 0.94622 0.98020 0.92906 0.89990 0.91415 0.93519 0.89142 0.88135 0.91997 0.90811 0.87877 0.87573 0.84939 0.81808 0.74366 0.78064 0.88529 0.93837 0.92815 1.01675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.66 11.17 21.65 0.24 -56.42 16 2 C -0.05 -2.70 4.92 84.86 0.42 -2.28 16 3 Si 0.96 44.33 29.59 68.60 2.03 46.36 16 4 H -0.26 -11.27 7.11 99.48 0.71 -10.57 16 5 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 6 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 7 C -0.25 -13.53 9.60 84.04 0.81 -12.72 16 8 H 0.07 3.59 7.89 -2.91 -0.02 3.56 16 9 N -0.60 -29.59 2.63 -700.26 -1.84 -31.43 16 10 C 0.13 5.37 6.49 86.36 0.56 5.93 16 11 C -0.12 -3.50 5.92 30.72 0.18 -3.31 16 12 C -0.09 -2.60 4.54 30.40 0.14 -2.46 16 13 C -0.09 -3.00 0.57 -51.90 -0.03 -3.03 16 14 C -0.11 -3.08 5.06 31.30 0.16 -2.92 16 15 C 0.10 2.53 6.76 86.57 0.59 3.12 16 16 N -0.62 -19.94 3.26 -809.98 -2.64 -22.58 16 17 C 0.52 18.58 7.88 87.66 0.69 19.28 16 18 O -0.59 -26.30 16.25 -3.05 -0.05 -26.34 16 19 C -0.06 -1.54 5.30 29.10 0.15 -1.39 16 20 C -0.18 -5.10 4.66 -19.94 -0.09 -5.20 16 21 C -0.22 -5.29 10.87 22.19 0.24 -5.04 16 22 C -0.04 -0.97 12.09 66.97 0.81 -0.16 16 23 O -0.19 -5.38 10.65 -2.53 -0.03 -5.40 16 24 C -0.05 -1.50 12.01 66.97 0.80 -0.70 16 25 C 0.12 3.94 5.95 86.47 0.51 4.46 16 26 C 0.21 9.97 3.83 86.06 0.33 10.30 16 27 H 0.24 14.54 8.31 -92.71 -0.77 13.77 16 28 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 29 H 0.05 2.06 7.94 -2.39 -0.02 2.05 16 30 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.07 1.92 7.28 -2.39 -0.02 1.90 16 32 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.09 1.92 8.11 -2.39 -0.02 1.90 16 34 H 0.10 2.18 7.65 -2.38 -0.02 2.16 16 35 H 0.06 2.20 7.57 -2.39 -0.02 2.18 16 36 H 0.07 1.81 7.55 -2.39 -0.02 1.79 16 37 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.11 2.72 7.91 -2.39 -0.02 2.70 16 39 H 0.13 2.55 8.14 -2.39 -0.02 2.54 16 40 H 0.16 3.19 8.06 -2.91 -0.02 3.17 16 41 H 0.24 2.93 8.06 -2.91 -0.02 2.91 16 42 H 0.20 5.63 8.06 -2.91 -0.02 5.61 16 43 H 0.10 2.55 8.02 -2.38 -0.02 2.53 16 44 H 0.04 1.76 7.73 -2.39 -0.02 1.74 16 45 H 0.05 2.97 6.06 -2.39 -0.01 2.96 16 46 H -0.03 -1.96 8.11 -2.39 -0.02 -1.98 16 Total: -1.00 -76.84 366.32 4.94 -71.90 By element: Atomic # 1 Polarization: 19.10 SS G_CDS: 0.96 Total: 20.06 kcal Atomic # 6 Polarization: -2.41 SS G_CDS: 6.27 Total: 3.86 kcal Atomic # 7 Polarization: -106.19 SS G_CDS: -4.24 Total: -110.43 kcal Atomic # 8 Polarization: -31.67 SS G_CDS: -0.08 Total: -31.75 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Total: -76.84 4.94 -71.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040176498.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.556 kcal (2) G-P(sol) polarization free energy of solvation -76.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds