Wall clock time and date at job start Tue Mar 31 2020 12:26:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86796 * 120.00008 * 2 1 4 4 H 1.48507 * 109.46956 * 239.99959 * 3 2 1 5 5 H 1.48495 * 109.47215 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47405 * 119.99855 * 3 2 1 7 7 C 1.38821 * 120.00063 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00095 * 163.24291 * 7 2 1 9 9 N 1.36939 * 119.99585 * 343.24306 * 7 2 1 10 10 C 1.46938 * 120.71127 * 152.36171 * 9 7 2 11 11 C 1.53182 * 108.94599 * 125.76982 * 10 9 7 12 12 C 1.53192 * 109.27780 * 55.30360 * 11 10 9 13 13 C 1.52062 * 109.68060 * 300.05082 * 12 11 10 14 14 C 1.54357 * 110.60338 * 295.83019 * 13 12 11 15 15 C 1.54467 * 102.86316 * 207.23106 * 14 13 12 16 16 N 1.47089 * 107.29871 * 21.47673 * 15 14 13 17 17 C 1.34781 * 125.62891 * 180.97725 * 16 15 14 18 18 O 1.21281 * 120.00125 * 180.02562 * 17 16 15 19 19 C 1.50699 * 119.99558 * 0.02567 * 17 16 15 20 20 C 1.50709 * 109.46670 * 179.97438 * 19 17 16 21 21 C 1.41383 * 126.57810 * 89.99849 * 20 19 17 22 22 C 1.34512 * 106.83975 * 179.97438 * 21 20 19 23 23 O 1.34303 * 108.42028 * 359.97438 * 22 21 20 24 24 C 1.34303 * 109.47428 * 359.76966 * 23 22 21 25 25 C 1.47581 * 108.74738 * 1.24076 * 16 15 14 26 26 C 1.47105 * 120.71964 * 332.37688 * 9 7 2 27 27 H 0.97000 * 120.00289 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.55243 * 245.60341 * 10 9 7 29 29 H 1.08999 * 109.56199 * 5.92465 * 10 9 7 30 30 H 1.08994 * 109.50841 * 175.25025 * 11 10 9 31 31 H 1.09000 * 109.50398 * 295.32893 * 11 10 9 32 32 H 1.08999 * 109.43729 * 179.97438 * 12 11 10 33 33 H 1.08999 * 109.43231 * 60.11185 * 12 11 10 34 34 H 1.08999 * 110.73483 * 88.89157 * 14 13 12 35 35 H 1.08995 * 110.73288 * 325.57258 * 14 13 12 36 36 H 1.08993 * 109.88306 * 262.05136 * 15 14 13 37 37 H 1.08995 * 109.87901 * 140.89570 * 15 14 13 38 38 H 1.08998 * 109.47289 * 60.00023 * 19 17 16 39 39 H 1.09004 * 109.47002 * 299.99528 * 19 17 16 40 40 H 1.08002 * 126.57662 * 359.92832 * 21 20 19 41 41 H 1.08001 * 125.79153 * 180.02562 * 22 21 20 42 42 H 1.08003 * 125.78882 * 180.23247 * 24 23 22 43 43 H 1.08994 * 110.37710 * 95.28470 * 25 16 15 44 44 H 1.09000 * 110.37835 * 217.63924 * 25 16 15 45 45 H 1.09001 * 109.57238 * 112.42731 * 26 9 7 46 46 H 1.09003 * 109.57744 * 352.04481 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6963 -1.2126 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0558 -1.2222 -0.2691 9 7 1.3691 -2.3628 0.3430 10 6 1.8200 -3.6551 -0.1915 11 6 2.0793 -4.6128 0.9755 12 6 0.8176 -4.7116 1.8387 13 6 0.4586 -3.3367 2.3802 14 6 1.5633 -2.8204 3.3267 15 6 0.7910 -1.8746 4.2728 16 7 -0.6261 -2.2653 4.2208 17 6 -1.6301 -1.6688 4.8936 18 8 -2.7660 -2.0771 4.7752 19 6 -1.3413 -0.4946 5.7930 20 6 -2.6246 -0.0159 6.4217 21 6 -3.1788 -0.4566 7.6455 22 6 -4.3219 0.2294 7.8250 23 8 -4.4881 1.0578 6.7810 24 6 -3.4590 0.9172 5.9296 25 6 -0.7662 -3.4221 3.3152 26 6 0.2139 -2.3426 1.2536 27 1 -0.4850 0.8400 -0.0004 28 1 1.0489 -4.0707 -0.8401 29 1 2.7397 -3.5143 -0.7593 30 1 2.3329 -5.5992 0.5875 31 1 2.9051 -4.2359 1.5790 32 1 0.9991 -5.3929 2.6698 33 1 -0.0067 -5.0897 1.2340 34 1 2.3236 -2.2728 2.7699 35 1 2.0096 -3.6438 3.8842 36 1 0.9036 -0.8432 3.9388 37 1 1.1673 -1.9799 5.2903 38 1 -0.9011 0.3122 5.2070 39 1 -0.6446 -0.7982 6.5744 40 1 -2.7643 -1.2016 8.3085 41 1 -4.9920 0.1312 8.6663 42 1 -3.3257 1.4592 5.0050 43 1 -0.7497 -4.3525 3.8828 44 1 -1.6885 -3.3440 2.7396 45 1 -0.6865 -2.6239 0.7074 46 1 0.0938 -1.3420 1.6690 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040176506.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:36 Heat of formation + Delta-G solvation = 1.799068 kcal Electronic energy + Delta-G solvation = -27781.350214 eV Core-core repulsion = 24059.082597 eV Total energy + Delta-G solvation = -3722.267618 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.49555 -40.05731 -38.28047 -35.68691 -33.90507 -33.17600 -31.39441 -30.28710 -29.93752 -29.14584 -27.90034 -25.47663 -25.14987 -22.72326 -22.21457 -21.56765 -20.96732 -20.34214 -19.01268 -18.10064 -17.28759 -16.84052 -16.53569 -15.78250 -15.75046 -15.17328 -14.73161 -14.53029 -14.17502 -14.05885 -13.70790 -13.55825 -13.07492 -12.89161 -12.77062 -12.52273 -12.44428 -12.32197 -12.07367 -11.97583 -11.84158 -11.42756 -11.20212 -10.99979 -10.88892 -10.64146 -10.42853 -10.16076 -10.06146 -9.87331 -9.82035 -9.62322 -9.43192 -9.35509 -8.50713 -8.47833 -8.25443 -6.69947 -5.81644 -3.24109 1.82604 2.57100 2.95448 3.18424 3.33508 3.40568 3.40840 3.43796 4.44995 4.76030 4.78699 4.83759 5.01148 5.04369 5.18563 5.27314 5.37066 5.44303 5.53852 5.55224 5.58382 5.64998 5.69817 5.76200 5.85631 6.01062 6.03285 6.04247 6.18935 6.21634 6.25302 6.27350 6.37703 6.46301 6.50501 6.54289 6.67408 6.76837 6.82513 6.89810 6.99248 7.14939 7.31471 7.63728 7.76444 7.87265 8.41129 8.49498 9.17653 9.81519 10.39276 11.26485 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.013204 B = 0.004242 C = 0.003474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2119.990901 B = 6599.129245 C = 8057.623245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.005 3.995 3 Si 0.897 3.103 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.283 1.283 7 C -0.253 4.253 8 H 0.065 0.935 9 N -0.589 5.589 10 C 0.143 3.857 11 C -0.132 4.132 12 C -0.093 4.093 13 C -0.093 4.093 14 C -0.112 4.112 15 C 0.102 3.898 16 N -0.611 5.611 17 C 0.529 3.471 18 O -0.541 6.541 19 C -0.067 4.067 20 C -0.161 4.161 21 C -0.198 4.198 22 C -0.050 4.050 23 O -0.178 6.178 24 C -0.025 4.025 25 C 0.120 3.880 26 C 0.191 3.809 27 H 0.254 0.746 28 H 0.016 0.984 29 H 0.052 0.948 30 H 0.050 0.950 31 H 0.059 0.941 32 H 0.048 0.952 33 H 0.056 0.944 34 H 0.097 0.903 35 H 0.060 0.940 36 H 0.071 0.929 37 H 0.059 0.941 38 H 0.102 0.898 39 H 0.099 0.901 40 H 0.144 0.856 41 H 0.199 0.801 42 H 0.202 0.798 43 H 0.058 0.942 44 H 0.075 0.925 45 H 0.017 0.983 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.579 -3.403 13.575 14.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.194 4.194 3 Si 0.727 3.273 4 H -0.209 1.209 5 H -0.217 1.217 6 H -0.210 1.210 7 C -0.383 4.383 8 H 0.083 0.917 9 N -0.312 5.312 10 C 0.016 3.984 11 C -0.172 4.172 12 C -0.131 4.131 13 C -0.095 4.095 14 C -0.150 4.150 15 C -0.021 4.021 16 N -0.345 5.345 17 C 0.317 3.683 18 O -0.418 6.418 19 C -0.107 4.107 20 C -0.162 4.162 21 C -0.217 4.217 22 C -0.117 4.117 23 O -0.073 6.073 24 C -0.093 4.093 25 C -0.003 4.003 26 C 0.065 3.935 27 H 0.064 0.936 28 H 0.034 0.966 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.115 0.885 35 H 0.079 0.921 36 H 0.090 0.910 37 H 0.077 0.923 38 H 0.120 0.880 39 H 0.117 0.883 40 H 0.162 0.838 41 H 0.216 0.784 42 H 0.218 0.782 43 H 0.076 0.924 44 H 0.093 0.907 45 H 0.035 0.965 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -1.599 -3.214 13.488 13.957 hybrid contribution 0.635 0.666 -0.003 0.920 sum -0.964 -2.548 13.485 13.757 Atomic orbital electron populations 1.70023 1.05187 1.25582 1.53593 1.25018 0.95182 0.98237 1.00921 0.86455 0.78978 0.83666 0.78207 1.20887 1.21679 1.20995 1.19113 0.92443 0.84697 1.42044 0.91723 1.44046 1.35054 1.01455 1.50616 1.20919 0.97472 0.87061 0.92918 1.22020 0.97283 0.98941 0.98919 1.21180 0.98267 0.95074 0.98572 1.21920 0.93044 0.97806 0.96746 1.22529 0.98285 0.98156 0.96022 1.22126 0.80480 1.00221 0.99272 1.48506 1.07766 1.32705 1.45522 1.20122 0.84005 0.83832 0.80311 1.90688 1.20939 1.65268 1.64927 1.19971 0.95169 0.97036 0.98538 1.19818 0.99052 1.00369 0.96993 1.21637 0.97546 1.03764 0.98779 1.23892 1.00018 0.95233 0.92562 1.84052 1.42192 1.52790 1.28316 1.23866 0.87145 1.02161 0.96089 1.22214 0.99807 0.87485 0.90800 1.20540 0.88481 0.97344 0.87127 0.93582 0.96595 0.92935 0.93176 0.92215 0.93333 0.92502 0.88454 0.92093 0.91047 0.92267 0.87980 0.88314 0.83817 0.78399 0.78173 0.92385 0.90686 0.96538 0.89099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.34 11.18 55.49 0.62 -24.72 16 2 C 0.01 0.14 4.93 -17.43 -0.09 0.06 16 3 Si 0.90 20.79 29.59 -169.99 -5.03 15.76 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.25 -6.57 9.60 -15.05 -0.14 -6.71 16 8 H 0.07 1.65 7.88 -52.49 -0.41 1.24 16 9 N -0.59 -13.86 2.60 -172.75 -0.45 -14.31 16 10 C 0.14 2.85 6.49 -3.71 -0.02 2.82 16 11 C -0.13 -2.13 5.92 -26.54 -0.16 -2.29 16 12 C -0.09 -1.46 4.65 -27.11 -0.13 -1.59 16 13 C -0.09 -1.62 0.56 -153.97 -0.09 -1.71 16 14 C -0.11 -1.76 4.88 -25.25 -0.12 -1.89 16 15 C 0.10 1.50 6.07 -2.95 -0.02 1.48 16 16 N -0.61 -10.14 3.32 -170.62 -0.57 -10.71 16 17 C 0.53 9.09 7.84 -10.98 -0.09 9.00 16 18 O -0.54 -11.26 16.30 5.56 0.09 -11.17 16 19 C -0.07 -0.90 5.41 -29.03 -0.16 -1.06 16 20 C -0.16 -2.24 4.66 -104.74 -0.49 -2.73 16 21 C -0.20 -2.48 10.87 -39.70 -0.43 -2.91 16 22 C -0.05 -0.57 12.09 29.42 0.36 -0.21 16 23 O -0.18 -2.38 10.65 5.71 0.06 -2.32 16 24 C -0.02 -0.34 12.01 29.41 0.35 0.02 16 25 C 0.12 2.05 5.83 -2.75 -0.02 2.03 16 26 C 0.19 4.31 3.93 -4.10 -0.02 4.29 16 27 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 28 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.05 1.03 7.93 -51.93 -0.41 0.62 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.96 7.40 -51.93 -0.38 0.58 16 32 H 0.05 0.66 8.10 -51.93 -0.42 0.24 16 33 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.10 1.75 7.67 -51.93 -0.40 1.35 16 35 H 0.06 0.83 7.98 -51.93 -0.41 0.42 16 36 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 39 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.14 1.53 8.06 -52.49 -0.42 1.11 16 41 H 0.20 1.42 8.06 -52.49 -0.42 1.00 16 42 H 0.20 2.31 8.06 -52.48 -0.42 1.89 16 43 H 0.06 0.90 8.00 -51.93 -0.42 0.49 16 44 H 0.07 1.44 7.94 -51.93 -0.41 1.02 16 45 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.09 2.30 5.70 -51.93 -0.30 2.01 16 LS Contribution 366.90 15.07 5.53 5.53 Total: -1.00 -31.81 366.90 -8.35 -40.16 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -7.35 Total: 3.16 kcal Atomic # 6 Polarization: -0.13 SS G_CDS: -1.25 Total: -1.38 kcal Atomic # 7 Polarization: -49.35 SS G_CDS: -0.40 Total: -49.74 kcal Atomic # 8 Polarization: -13.64 SS G_CDS: 0.15 Total: -13.49 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.03 Total: 15.76 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.81 -8.35 -40.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040176506.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.955 kcal (2) G-P(sol) polarization free energy of solvation -31.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.156 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds