Wall clock time and date at job start Tue Mar 31 2020 12:26:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86796 * 120.00008 * 2 1 4 4 H 1.48507 * 109.46956 * 239.99959 * 3 2 1 5 5 H 1.48495 * 109.47215 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47405 * 119.99855 * 3 2 1 7 7 C 1.38821 * 120.00063 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00095 * 163.24291 * 7 2 1 9 9 N 1.36939 * 119.99585 * 343.24306 * 7 2 1 10 10 C 1.46938 * 120.71127 * 152.36171 * 9 7 2 11 11 C 1.53182 * 108.94599 * 125.76982 * 10 9 7 12 12 C 1.53192 * 109.27780 * 55.30360 * 11 10 9 13 13 C 1.52062 * 109.68060 * 300.05082 * 12 11 10 14 14 C 1.54357 * 110.60338 * 295.83019 * 13 12 11 15 15 C 1.54467 * 102.86316 * 207.23106 * 14 13 12 16 16 N 1.47089 * 107.29871 * 21.47673 * 15 14 13 17 17 C 1.34781 * 125.62891 * 180.97725 * 16 15 14 18 18 O 1.21281 * 120.00125 * 180.02562 * 17 16 15 19 19 C 1.50699 * 119.99558 * 0.02567 * 17 16 15 20 20 C 1.50709 * 109.46670 * 179.97438 * 19 17 16 21 21 C 1.41383 * 126.57810 * 89.99849 * 20 19 17 22 22 C 1.34512 * 106.83975 * 179.97438 * 21 20 19 23 23 O 1.34303 * 108.42028 * 359.97438 * 22 21 20 24 24 C 1.34303 * 109.47428 * 359.76966 * 23 22 21 25 25 C 1.47581 * 108.74738 * 1.24076 * 16 15 14 26 26 C 1.47105 * 120.71964 * 332.37688 * 9 7 2 27 27 H 0.97000 * 120.00289 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.55243 * 245.60341 * 10 9 7 29 29 H 1.08999 * 109.56199 * 5.92465 * 10 9 7 30 30 H 1.08994 * 109.50841 * 175.25025 * 11 10 9 31 31 H 1.09000 * 109.50398 * 295.32893 * 11 10 9 32 32 H 1.08999 * 109.43729 * 179.97438 * 12 11 10 33 33 H 1.08999 * 109.43231 * 60.11185 * 12 11 10 34 34 H 1.08999 * 110.73483 * 88.89157 * 14 13 12 35 35 H 1.08995 * 110.73288 * 325.57258 * 14 13 12 36 36 H 1.08993 * 109.88306 * 262.05136 * 15 14 13 37 37 H 1.08995 * 109.87901 * 140.89570 * 15 14 13 38 38 H 1.08998 * 109.47289 * 60.00023 * 19 17 16 39 39 H 1.09004 * 109.47002 * 299.99528 * 19 17 16 40 40 H 1.08002 * 126.57662 * 359.92832 * 21 20 19 41 41 H 1.08001 * 125.79153 * 180.02562 * 22 21 20 42 42 H 1.08003 * 125.78882 * 180.23247 * 24 23 22 43 43 H 1.08994 * 110.37710 * 95.28470 * 25 16 15 44 44 H 1.09000 * 110.37835 * 217.63924 * 25 16 15 45 45 H 1.09001 * 109.57238 * 112.42731 * 26 9 7 46 46 H 1.09003 * 109.57744 * 352.04481 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6963 -1.2126 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0558 -1.2222 -0.2691 9 7 1.3691 -2.3628 0.3430 10 6 1.8200 -3.6551 -0.1915 11 6 2.0793 -4.6128 0.9755 12 6 0.8176 -4.7116 1.8387 13 6 0.4586 -3.3367 2.3802 14 6 1.5633 -2.8204 3.3267 15 6 0.7910 -1.8746 4.2728 16 7 -0.6261 -2.2653 4.2208 17 6 -1.6301 -1.6688 4.8936 18 8 -2.7660 -2.0771 4.7752 19 6 -1.3413 -0.4946 5.7930 20 6 -2.6246 -0.0159 6.4217 21 6 -3.1788 -0.4566 7.6455 22 6 -4.3219 0.2294 7.8250 23 8 -4.4881 1.0578 6.7810 24 6 -3.4590 0.9172 5.9296 25 6 -0.7662 -3.4221 3.3152 26 6 0.2139 -2.3426 1.2536 27 1 -0.4850 0.8400 -0.0004 28 1 1.0489 -4.0707 -0.8401 29 1 2.7397 -3.5143 -0.7593 30 1 2.3329 -5.5992 0.5875 31 1 2.9051 -4.2359 1.5790 32 1 0.9991 -5.3929 2.6698 33 1 -0.0067 -5.0897 1.2340 34 1 2.3236 -2.2728 2.7699 35 1 2.0096 -3.6438 3.8842 36 1 0.9036 -0.8432 3.9388 37 1 1.1673 -1.9799 5.2903 38 1 -0.9011 0.3122 5.2070 39 1 -0.6446 -0.7982 6.5744 40 1 -2.7643 -1.2016 8.3085 41 1 -4.9920 0.1312 8.6663 42 1 -3.3257 1.4592 5.0050 43 1 -0.7497 -4.3525 3.8828 44 1 -1.6885 -3.3440 2.7396 45 1 -0.6865 -2.6239 0.7074 46 1 0.0938 -1.3420 1.6690 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040176506.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:35 Heat of formation + Delta-G solvation = -16.747448 kcal Electronic energy + Delta-G solvation = -27782.154452 eV Core-core repulsion = 24059.082597 eV Total energy + Delta-G solvation = -3723.071855 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.45694 -41.43242 -39.72131 -37.22444 -35.00955 -34.86564 -32.90931 -31.73473 -31.21456 -30.45568 -29.03944 -27.33806 -26.58322 -24.06445 -23.83705 -22.49362 -22.36215 -21.53222 -20.28846 -19.58899 -18.54972 -18.28550 -17.96206 -17.08380 -16.82675 -16.79119 -16.19506 -15.72716 -15.52671 -15.46328 -15.27873 -15.00303 -14.57905 -14.17263 -13.99835 -13.80981 -13.67568 -13.59434 -13.42945 -13.37766 -13.25020 -12.90173 -12.63268 -12.50937 -12.47538 -12.31696 -12.13377 -11.79323 -11.61010 -11.32920 -11.19998 -11.04059 -10.98342 -10.53108 -10.49639 -9.59167 -9.44615 -8.64687 -7.83854 -5.29067 0.85621 1.48350 1.48831 1.55712 1.56224 1.65063 2.18683 2.31626 2.52878 3.28186 3.46036 3.70550 3.75290 3.86572 3.90760 3.99816 4.03231 4.14654 4.33842 4.35889 4.40394 4.47179 4.52724 4.56012 4.63314 4.69745 4.77243 4.81993 4.86194 4.95293 5.03792 5.09382 5.09972 5.19245 5.24624 5.27388 5.30973 5.42476 5.46121 5.50846 5.58185 5.63917 5.70424 5.79550 6.19091 6.40944 6.58004 7.17157 7.17394 7.89705 8.42606 9.21808 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.013204 B = 0.004242 C = 0.003474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2119.990901 B = 6599.129245 C = 8057.623245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.046 4.046 3 Si 0.958 3.042 4 H -0.279 1.279 5 H -0.301 1.301 6 H -0.269 1.269 7 C -0.255 4.255 8 H 0.069 0.931 9 N -0.604 5.604 10 C 0.134 3.866 11 C -0.119 4.119 12 C -0.091 4.091 13 C -0.087 4.087 14 C -0.103 4.103 15 C 0.102 3.898 16 N -0.614 5.614 17 C 0.522 3.478 18 O -0.586 6.586 19 C -0.059 4.059 20 C -0.178 4.178 21 C -0.217 4.217 22 C -0.044 4.044 23 O -0.190 6.190 24 C -0.048 4.048 25 C 0.122 3.878 26 C 0.206 3.794 27 H 0.246 0.754 28 H 0.003 0.997 29 H 0.053 0.947 30 H 0.081 0.919 31 H 0.067 0.933 32 H 0.086 0.914 33 H 0.047 0.953 34 H 0.074 0.926 35 H 0.097 0.903 36 H 0.055 0.945 37 H 0.102 0.898 38 H 0.108 0.892 39 H 0.130 0.870 40 H 0.162 0.838 41 H 0.239 0.761 42 H 0.208 0.792 43 H 0.085 0.915 44 H 0.040 0.960 45 H -0.031 1.031 46 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.495 -4.647 16.079 16.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.241 4.241 3 Si 0.787 3.213 4 H -0.205 1.205 5 H -0.227 1.227 6 H -0.195 1.195 7 C -0.385 4.385 8 H 0.087 0.913 9 N -0.327 5.327 10 C 0.009 3.991 11 C -0.158 4.158 12 C -0.129 4.129 13 C -0.089 4.089 14 C -0.141 4.141 15 C -0.020 4.020 16 N -0.347 5.347 17 C 0.312 3.688 18 O -0.467 6.467 19 C -0.098 4.098 20 C -0.180 4.180 21 C -0.236 4.236 22 C -0.110 4.110 23 O -0.086 6.086 24 C -0.116 4.116 25 C -0.001 4.001 26 C 0.081 3.919 27 H 0.055 0.945 28 H 0.021 0.979 29 H 0.072 0.928 30 H 0.100 0.900 31 H 0.086 0.914 32 H 0.105 0.895 33 H 0.066 0.934 34 H 0.093 0.907 35 H 0.116 0.884 36 H 0.073 0.927 37 H 0.120 0.880 38 H 0.127 0.873 39 H 0.148 0.852 40 H 0.180 0.820 41 H 0.255 0.745 42 H 0.224 0.776 43 H 0.103 0.897 44 H 0.059 0.941 45 H -0.013 1.013 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.533 -4.483 15.991 16.616 hybrid contribution -0.041 1.003 -0.876 1.332 sum 0.492 -3.480 15.115 15.518 Atomic orbital electron populations 1.70214 1.06801 1.25558 1.55725 1.25711 0.95714 1.01236 1.01463 0.85477 0.77605 0.79593 0.78644 1.20489 1.22748 1.19501 1.19451 0.92715 0.85712 1.40630 0.91317 1.44300 1.34899 1.02243 1.51282 1.21126 0.96842 0.86420 0.94715 1.21883 0.97558 0.99169 0.97165 1.21207 0.97795 0.94229 0.99647 1.21696 0.94327 0.97653 0.95269 1.22473 0.96949 0.99084 0.95594 1.22244 0.79213 0.99112 1.01412 1.48640 1.08681 1.32445 1.44899 1.20827 0.83354 0.84272 0.80325 1.90659 1.22706 1.66721 1.66608 1.19986 0.95762 0.95447 0.98600 1.20093 0.99444 1.00593 0.97825 1.21957 0.98195 1.04689 0.98753 1.24724 1.00129 0.93668 0.92490 1.84050 1.42195 1.53467 1.28910 1.24144 0.87610 1.03020 0.96783 1.22163 0.98016 0.89009 0.90933 1.20194 0.86589 0.97098 0.88067 0.94514 0.97915 0.92829 0.90026 0.91440 0.89527 0.93392 0.90695 0.88414 0.92654 0.87986 0.87345 0.85214 0.82036 0.74475 0.77557 0.89691 0.94090 1.01281 0.92367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.33 11.18 21.65 0.24 -55.09 16 2 C -0.05 -2.49 4.93 84.87 0.42 -2.08 16 3 Si 0.96 43.46 29.59 68.60 2.03 45.49 16 4 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 5 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 6 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 7 C -0.25 -13.39 9.60 84.04 0.81 -12.59 16 8 H 0.07 3.50 7.88 -2.91 -0.02 3.47 16 9 N -0.60 -28.97 2.60 -700.45 -1.82 -30.80 16 10 C 0.13 5.30 6.49 86.36 0.56 5.86 16 11 C -0.12 -3.48 5.92 30.72 0.18 -3.29 16 12 C -0.09 -2.62 4.65 30.35 0.14 -2.48 16 13 C -0.09 -2.97 0.56 -51.83 -0.03 -3.00 16 14 C -0.10 -2.97 4.88 31.55 0.15 -2.82 16 15 C 0.10 2.78 6.07 86.77 0.53 3.31 16 16 N -0.61 -19.89 3.32 -812.10 -2.69 -22.59 16 17 C 0.52 17.86 7.84 87.66 0.69 18.55 16 18 O -0.59 -25.00 16.30 -3.03 -0.05 -25.05 16 19 C -0.06 -1.50 5.41 29.10 0.16 -1.34 16 20 C -0.18 -4.86 4.66 -19.94 -0.09 -4.96 16 21 C -0.22 -5.11 10.87 22.19 0.24 -4.87 16 22 C -0.04 -0.92 12.09 66.97 0.81 -0.11 16 23 O -0.19 -5.02 10.65 -2.49 -0.03 -5.05 16 24 C -0.05 -1.33 12.01 66.96 0.80 -0.52 16 25 C 0.12 4.12 5.83 86.62 0.50 4.63 16 26 C 0.21 9.70 3.93 86.01 0.34 10.04 16 27 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 28 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 29 H 0.05 2.06 7.93 -2.39 -0.02 2.04 16 30 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.07 1.91 7.40 -2.39 -0.02 1.89 16 32 H 0.09 1.93 8.10 -2.39 -0.02 1.91 16 33 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.07 2.55 7.67 -2.39 -0.02 2.53 16 35 H 0.10 2.15 7.98 -2.39 -0.02 2.13 16 36 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 38 H 0.11 2.62 8.14 -2.39 -0.02 2.60 16 39 H 0.13 2.47 8.14 -2.38 -0.02 2.45 16 40 H 0.16 3.07 8.06 -2.91 -0.02 3.05 16 41 H 0.24 2.70 8.06 -2.91 -0.02 2.68 16 42 H 0.21 5.05 8.06 -2.91 -0.02 5.03 16 43 H 0.09 2.44 8.00 -2.39 -0.02 2.42 16 44 H 0.04 1.65 7.94 -2.39 -0.02 1.63 16 45 H -0.03 -1.69 8.14 -2.39 -0.02 -1.71 16 46 H 0.06 3.11 5.70 -2.39 -0.01 3.09 16 Total: -1.00 -73.54 366.90 4.84 -68.70 By element: Atomic # 1 Polarization: 19.11 SS G_CDS: 0.96 Total: 20.06 kcal Atomic # 6 Polarization: -1.89 SS G_CDS: 6.21 Total: 4.32 kcal Atomic # 7 Polarization: -104.20 SS G_CDS: -4.28 Total: -108.47 kcal Atomic # 8 Polarization: -30.02 SS G_CDS: -0.08 Total: -30.09 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Total: -73.54 4.84 -68.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040176506.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.951 kcal (2) G-P(sol) polarization free energy of solvation -73.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds