Wall clock time and date at job start Tue Mar 31 2020 12:11:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86795 * 120.00030 * 2 1 4 4 H 1.48498 * 109.46931 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47297 * 300.00419 * 3 2 1 6 6 H 1.48503 * 109.47265 * 60.00377 * 3 2 1 7 7 C 1.38807 * 119.99887 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00331 * 163.22667 * 7 2 1 9 9 N 1.36946 * 120.00137 * 343.22788 * 7 2 1 10 10 C 1.46938 * 120.70518 * 152.23237 * 9 7 2 11 11 C 1.53174 * 108.93382 * 125.86148 * 10 9 7 12 12 C 1.53166 * 109.28006 * 55.20937 * 11 10 9 13 13 C 1.52234 * 109.64858 * 299.83605 * 12 11 10 14 14 C 1.54505 * 110.24050 * 297.11106 * 13 12 11 15 15 C 1.55251 * 101.42424 * 206.41303 * 14 13 12 16 16 N 1.47488 * 104.78860 * 36.65831 * 15 14 13 17 17 C 1.34777 * 125.66557 * 155.90994 * 16 15 14 18 18 O 1.21278 * 120.00225 * 179.69521 * 17 16 15 19 19 C 1.50704 * 119.99841 * 359.69534 * 17 16 15 20 20 C 1.50697 * 109.47205 * 179.97438 * 19 17 16 21 21 C 1.34509 * 125.79053 * 89.99912 * 20 19 17 22 22 C 1.41380 * 106.84266 * 180.02562 * 21 20 19 23 23 C 1.34519 * 106.83907 * 359.97438 * 22 21 20 24 24 O 1.34295 * 108.42052 * 0.02562 * 23 22 21 25 25 C 1.47188 * 108.67018 * 335.65147 * 16 15 14 26 26 C 1.47074 * 120.70547 * 332.25390 * 9 7 2 27 27 H 0.96996 * 120.00106 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.55818 * 245.69743 * 10 9 7 29 29 H 1.09003 * 109.56098 * 6.01978 * 10 9 7 30 30 H 1.09008 * 109.50361 * 175.15112 * 11 10 9 31 31 H 1.09000 * 109.50660 * 295.22814 * 11 10 9 32 32 H 1.09001 * 109.44613 * 179.77503 * 12 11 10 33 33 H 1.09006 * 109.44273 * 59.88361 * 12 11 10 34 34 H 1.09007 * 111.01873 * 324.65085 * 14 13 12 35 35 H 1.08998 * 111.01812 * 88.49103 * 14 13 12 36 36 H 1.09003 * 110.49616 * 277.79861 * 15 14 13 37 37 H 1.09004 * 110.33333 * 155.43783 * 15 14 13 38 38 H 1.09001 * 109.46844 * 59.99371 * 19 17 16 39 39 H 1.09001 * 109.47217 * 300.00172 * 19 17 16 40 40 H 1.08000 * 126.57811 * 359.77281 * 21 20 19 41 41 H 1.07997 * 126.58343 * 180.02562 * 22 21 20 42 42 H 1.07999 * 125.78961 * 179.97438 * 23 22 21 43 43 H 1.08997 * 109.91262 * 121.12915 * 25 16 15 44 44 H 1.09011 * 109.90595 * 242.39115 * 25 16 15 45 45 H 1.08995 * 109.57964 * 112.64363 * 26 9 7 46 46 H 1.08999 * 109.57889 * 352.24928 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3964 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0558 -1.2220 -0.2705 9 7 1.3692 -2.3630 0.3412 10 6 1.8184 -3.6545 -0.1968 11 6 2.0775 -4.6150 0.9680 12 6 0.8173 -4.7126 1.8329 13 6 0.4657 -3.3370 2.3823 14 6 1.5956 -2.8244 3.3030 15 6 0.8154 -1.8663 4.2430 16 7 -0.4884 -2.5233 4.4523 17 6 -1.3042 -2.3322 5.5080 18 8 -2.3603 -2.9247 5.5733 19 6 -0.9039 -1.3822 6.6073 20 6 -1.9816 -1.3495 7.6601 21 6 -2.0528 -2.1509 8.7381 22 6 -3.2162 -1.7779 9.4496 23 6 -3.7860 -0.7705 8.7642 24 8 -3.0341 -0.5154 7.6811 25 6 -0.7535 -3.4176 3.3137 26 6 0.2162 -2.3436 1.2540 27 1 -0.4850 0.8400 0.0004 28 1 1.0465 -4.0678 -0.8459 29 1 2.7379 -3.5133 -0.7649 30 1 2.3282 -5.6014 0.5774 31 1 2.9052 -4.2412 1.5707 32 1 0.9974 -5.3987 2.6605 33 1 -0.0101 -5.0839 1.2281 34 1 2.0469 -3.6443 3.8618 35 1 2.3492 -2.2819 2.7322 36 1 0.6783 -0.8943 3.7690 37 1 1.3407 -1.7555 5.1917 38 1 -0.7706 -0.3828 6.1931 39 1 0.0317 -1.7177 7.0547 40 1 -1.3572 -2.9323 9.0061 41 1 -3.5775 -2.2169 10.3678 42 1 -4.6946 -0.2548 9.0380 43 1 -0.8836 -4.4403 3.6674 44 1 -1.6477 -3.0888 2.7839 45 1 -0.6849 -2.6270 0.7103 46 1 0.0954 -1.3428 1.6685 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040462253.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:41 Heat of formation + Delta-G solvation = 3.218634 kcal Electronic energy + Delta-G solvation = -27582.037943 eV Core-core repulsion = 23859.831883 eV Total energy + Delta-G solvation = -3722.206061 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.57306 -40.13178 -38.37642 -35.73171 -33.28837 -33.12554 -32.24504 -31.11207 -30.00629 -29.14210 -27.44905 -25.45116 -25.10983 -22.85470 -22.21342 -21.77861 -21.04180 -20.41984 -19.14066 -18.17234 -17.33901 -16.98049 -16.55773 -15.96915 -15.78248 -15.26200 -14.79367 -14.32878 -14.19709 -14.06540 -13.73494 -13.52565 -13.06713 -12.91092 -12.84949 -12.73145 -12.47776 -12.42332 -12.10319 -12.05848 -11.80123 -11.67474 -11.27959 -11.01158 -10.95843 -10.70437 -10.41473 -10.16779 -10.06202 -9.93269 -9.84256 -9.81258 -9.55509 -9.41595 -8.52924 -8.48246 -8.37476 -6.71838 -5.83839 -3.26306 1.68277 2.56573 2.76190 2.90691 3.31698 3.33444 3.41180 3.42428 4.43856 4.50907 4.65383 4.90760 4.96363 4.98873 5.07818 5.16283 5.24314 5.26265 5.37977 5.51855 5.59396 5.62204 5.72821 5.74879 5.82359 5.86917 5.97660 6.00931 6.06058 6.17639 6.23045 6.30890 6.40554 6.42641 6.46846 6.49504 6.59512 6.73986 6.80578 6.88201 6.97701 7.11496 7.27356 7.58748 7.73441 7.75232 8.31291 8.39017 9.15739 9.79353 10.36955 11.24450 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.015074 B = 0.003707 C = 0.003184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.092279 B = 7552.396483 C = 8792.224146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.004 3.996 3 Si 0.897 3.103 4 H -0.277 1.277 5 H -0.291 1.291 6 H -0.289 1.289 7 C -0.251 4.251 8 H 0.066 0.934 9 N -0.589 5.589 10 C 0.143 3.857 11 C -0.132 4.132 12 C -0.093 4.093 13 C -0.093 4.093 14 C -0.112 4.112 15 C 0.096 3.904 16 N -0.610 5.610 17 C 0.527 3.473 18 O -0.539 6.539 19 C -0.059 4.059 20 C 0.013 3.987 21 C -0.200 4.200 22 C -0.215 4.215 23 C -0.041 4.041 24 O -0.171 6.171 25 C 0.122 3.878 26 C 0.188 3.812 27 H 0.253 0.747 28 H 0.017 0.983 29 H 0.052 0.948 30 H 0.050 0.950 31 H 0.059 0.941 32 H 0.048 0.952 33 H 0.056 0.944 34 H 0.061 0.939 35 H 0.100 0.900 36 H 0.079 0.921 37 H 0.069 0.931 38 H 0.112 0.888 39 H 0.122 0.878 40 H 0.145 0.855 41 H 0.146 0.854 42 H 0.201 0.799 43 H 0.061 0.939 44 H 0.068 0.932 45 H 0.019 0.981 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.235 -4.702 14.653 15.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.195 4.195 3 Si 0.727 3.273 4 H -0.202 1.202 5 H -0.218 1.218 6 H -0.216 1.216 7 C -0.381 4.381 8 H 0.084 0.916 9 N -0.312 5.312 10 C 0.016 3.984 11 C -0.172 4.172 12 C -0.131 4.131 13 C -0.095 4.095 14 C -0.150 4.150 15 C -0.027 4.027 16 N -0.344 5.344 17 C 0.314 3.686 18 O -0.417 6.417 19 C -0.099 4.099 20 C -0.038 4.038 21 C -0.220 4.220 22 C -0.234 4.234 23 C -0.109 4.109 24 O -0.067 6.067 25 C -0.001 4.001 26 C 0.062 3.938 27 H 0.064 0.936 28 H 0.034 0.966 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.066 0.934 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.118 0.882 36 H 0.097 0.903 37 H 0.087 0.913 38 H 0.130 0.870 39 H 0.139 0.861 40 H 0.163 0.837 41 H 0.164 0.836 42 H 0.218 0.782 43 H 0.079 0.921 44 H 0.087 0.913 45 H 0.037 0.963 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -0.528 -4.629 14.493 15.223 hybrid contribution 0.276 0.761 0.158 0.825 sum -0.253 -3.868 14.651 15.155 Atomic orbital electron populations 1.70035 1.05203 1.25421 1.53810 1.25028 0.95211 0.98295 1.00943 0.86305 0.79411 0.84204 0.77377 1.20227 1.21760 1.21557 1.19195 0.92492 0.84595 1.41790 0.91603 1.44056 1.35180 1.01539 1.50389 1.20923 0.97510 0.87020 0.92913 1.22022 0.97297 0.98958 0.98894 1.21255 0.98284 0.95023 0.98531 1.21845 0.92956 0.98007 0.96715 1.22733 0.97973 0.98062 0.96201 1.22581 0.82837 0.97715 0.99535 1.48545 1.20558 1.44385 1.20880 1.19910 0.83712 0.82881 0.82054 1.90720 1.23178 1.49521 1.78245 1.20091 0.95435 1.01977 0.92383 1.21547 0.90358 0.93976 0.97912 1.21487 1.00867 1.02715 0.96889 1.21772 0.97932 1.00654 1.03020 1.23977 0.98230 1.01190 0.87467 1.84006 1.31002 1.50576 1.41099 1.21957 0.99038 0.93103 0.85955 1.20664 0.88677 0.97258 0.87199 0.93648 0.96557 0.92903 0.93165 0.92183 0.93367 0.92504 0.92059 0.88154 0.90326 0.91311 0.86987 0.86055 0.83686 0.83584 0.78226 0.92068 0.91348 0.96334 0.89120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.04 11.18 55.49 0.62 -24.42 16 2 C 0.00 0.11 4.93 -17.43 -0.09 0.02 16 3 Si 0.90 20.62 29.59 -169.99 -5.03 15.59 16 4 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.25 -6.40 9.59 -15.06 -0.14 -6.55 16 8 H 0.07 1.67 7.88 -52.48 -0.41 1.25 16 9 N -0.59 -13.60 2.53 -172.69 -0.44 -14.03 16 10 C 0.14 2.80 6.49 -3.71 -0.02 2.78 16 11 C -0.13 -2.11 5.90 -26.56 -0.16 -2.26 16 12 C -0.09 -1.45 4.53 -27.04 -0.12 -1.58 16 13 C -0.09 -1.60 0.56 -154.09 -0.09 -1.68 16 14 C -0.11 -1.72 4.91 -24.75 -0.12 -1.84 16 15 C 0.10 1.37 6.38 -2.31 -0.01 1.36 16 16 N -0.61 -9.71 3.33 -170.54 -0.57 -10.28 16 17 C 0.53 8.58 7.84 -10.98 -0.09 8.50 16 18 O -0.54 -10.86 16.36 5.56 0.09 -10.77 16 19 C -0.06 -0.73 5.24 -29.03 -0.15 -0.88 16 20 C 0.01 0.18 5.81 -35.63 -0.21 -0.03 16 21 C -0.20 -2.54 10.81 -39.71 -0.43 -2.97 16 22 C -0.21 -2.44 10.91 -39.70 -0.43 -2.88 16 23 C -0.04 -0.47 12.09 29.42 0.36 -0.11 16 24 O -0.17 -2.48 10.65 5.72 0.06 -2.42 16 25 C 0.12 2.08 6.05 -3.33 -0.02 2.06 16 26 C 0.19 4.13 3.81 -4.04 -0.02 4.12 16 27 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 28 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.05 1.02 7.93 -51.93 -0.41 0.61 16 30 H 0.05 0.69 8.14 -51.92 -0.42 0.27 16 31 H 0.06 0.96 7.31 -51.93 -0.38 0.58 16 32 H 0.05 0.67 8.11 -51.93 -0.42 0.25 16 33 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.06 0.84 8.01 -51.93 -0.42 0.42 16 35 H 0.10 1.76 7.58 -51.93 -0.39 1.37 16 36 H 0.08 1.26 7.64 -51.93 -0.40 0.87 16 37 H 0.07 0.75 7.48 -51.93 -0.39 0.36 16 38 H 0.11 1.25 8.14 -51.93 -0.42 0.82 16 39 H 0.12 1.10 7.86 -51.93 -0.41 0.69 16 40 H 0.15 1.56 8.06 -52.49 -0.42 1.14 16 41 H 0.15 1.27 8.06 -52.49 -0.42 0.84 16 42 H 0.20 1.45 8.06 -52.49 -0.42 1.03 16 43 H 0.06 1.00 7.79 -51.93 -0.40 0.59 16 44 H 0.07 1.29 7.80 -51.92 -0.41 0.88 16 45 H 0.02 0.45 8.11 -51.93 -0.42 0.03 16 46 H 0.09 2.24 5.28 -51.93 -0.27 1.97 16 LS Contribution 364.66 15.07 5.50 5.50 Total: -1.00 -31.64 364.66 -8.74 -40.38 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: -7.23 Total: 2.41 kcal Atomic # 6 Polarization: -0.21 SS G_CDS: -1.74 Total: -1.96 kcal Atomic # 7 Polarization: -48.35 SS G_CDS: -0.38 Total: -48.74 kcal Atomic # 8 Polarization: -13.34 SS G_CDS: 0.15 Total: -13.19 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.03 Total: 15.59 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.64 -8.74 -40.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040462253.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.594 kcal (2) G-P(sol) polarization free energy of solvation -31.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds