Wall clock time and date at job start Tue Mar 31 2020 12:11:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86795 * 120.00030 * 2 1 4 4 H 1.48498 * 109.46931 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47297 * 300.00419 * 3 2 1 6 6 H 1.48503 * 109.47265 * 60.00377 * 3 2 1 7 7 C 1.38807 * 119.99887 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00331 * 163.22667 * 7 2 1 9 9 N 1.36946 * 120.00137 * 343.22788 * 7 2 1 10 10 C 1.46938 * 120.70518 * 152.23237 * 9 7 2 11 11 C 1.53174 * 108.93382 * 125.86148 * 10 9 7 12 12 C 1.53166 * 109.28006 * 55.20937 * 11 10 9 13 13 C 1.52234 * 109.64858 * 299.83605 * 12 11 10 14 14 C 1.54505 * 110.24050 * 297.11106 * 13 12 11 15 15 C 1.55251 * 101.42424 * 206.41303 * 14 13 12 16 16 N 1.47488 * 104.78860 * 36.65831 * 15 14 13 17 17 C 1.34777 * 125.66557 * 155.90994 * 16 15 14 18 18 O 1.21278 * 120.00225 * 179.69521 * 17 16 15 19 19 C 1.50704 * 119.99841 * 359.69534 * 17 16 15 20 20 C 1.50697 * 109.47205 * 179.97438 * 19 17 16 21 21 C 1.34509 * 125.79053 * 89.99912 * 20 19 17 22 22 C 1.41380 * 106.84266 * 180.02562 * 21 20 19 23 23 C 1.34519 * 106.83907 * 359.97438 * 22 21 20 24 24 O 1.34295 * 108.42052 * 0.02562 * 23 22 21 25 25 C 1.47188 * 108.67018 * 335.65147 * 16 15 14 26 26 C 1.47074 * 120.70547 * 332.25390 * 9 7 2 27 27 H 0.96996 * 120.00106 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.55818 * 245.69743 * 10 9 7 29 29 H 1.09003 * 109.56098 * 6.01978 * 10 9 7 30 30 H 1.09008 * 109.50361 * 175.15112 * 11 10 9 31 31 H 1.09000 * 109.50660 * 295.22814 * 11 10 9 32 32 H 1.09001 * 109.44613 * 179.77503 * 12 11 10 33 33 H 1.09006 * 109.44273 * 59.88361 * 12 11 10 34 34 H 1.09007 * 111.01873 * 324.65085 * 14 13 12 35 35 H 1.08998 * 111.01812 * 88.49103 * 14 13 12 36 36 H 1.09003 * 110.49616 * 277.79861 * 15 14 13 37 37 H 1.09004 * 110.33333 * 155.43783 * 15 14 13 38 38 H 1.09001 * 109.46844 * 59.99371 * 19 17 16 39 39 H 1.09001 * 109.47217 * 300.00172 * 19 17 16 40 40 H 1.08000 * 126.57811 * 359.77281 * 21 20 19 41 41 H 1.07997 * 126.58343 * 180.02562 * 22 21 20 42 42 H 1.07999 * 125.78961 * 179.97438 * 23 22 21 43 43 H 1.08997 * 109.91262 * 121.12915 * 25 16 15 44 44 H 1.09011 * 109.90595 * 242.39115 * 25 16 15 45 45 H 1.08995 * 109.57964 * 112.64363 * 26 9 7 46 46 H 1.08999 * 109.57889 * 352.24928 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3964 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0558 -1.2220 -0.2705 9 7 1.3692 -2.3630 0.3412 10 6 1.8184 -3.6545 -0.1968 11 6 2.0775 -4.6150 0.9680 12 6 0.8173 -4.7126 1.8329 13 6 0.4657 -3.3370 2.3823 14 6 1.5956 -2.8244 3.3030 15 6 0.8154 -1.8663 4.2430 16 7 -0.4884 -2.5233 4.4523 17 6 -1.3042 -2.3322 5.5080 18 8 -2.3603 -2.9247 5.5733 19 6 -0.9039 -1.3822 6.6073 20 6 -1.9816 -1.3495 7.6601 21 6 -2.0528 -2.1509 8.7381 22 6 -3.2162 -1.7779 9.4496 23 6 -3.7860 -0.7705 8.7642 24 8 -3.0341 -0.5154 7.6811 25 6 -0.7535 -3.4176 3.3137 26 6 0.2162 -2.3436 1.2540 27 1 -0.4850 0.8400 0.0004 28 1 1.0465 -4.0678 -0.8459 29 1 2.7379 -3.5133 -0.7649 30 1 2.3282 -5.6014 0.5774 31 1 2.9052 -4.2412 1.5707 32 1 0.9974 -5.3987 2.6605 33 1 -0.0101 -5.0839 1.2281 34 1 2.0469 -3.6443 3.8618 35 1 2.3492 -2.2819 2.7322 36 1 0.6783 -0.8943 3.7690 37 1 1.3407 -1.7555 5.1917 38 1 -0.7706 -0.3828 6.1931 39 1 0.0317 -1.7177 7.0547 40 1 -1.3572 -2.9323 9.0061 41 1 -3.5775 -2.2169 10.3678 42 1 -4.6946 -0.2548 9.0380 43 1 -0.8836 -4.4403 3.6674 44 1 -1.6477 -3.0888 2.7839 45 1 -0.6849 -2.6270 0.7103 46 1 0.0954 -1.3428 1.6685 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040462253.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:40 Heat of formation + Delta-G solvation = -15.039192 kcal Electronic energy + Delta-G solvation = -27582.829662 eV Core-core repulsion = 23859.831883 eV Total energy + Delta-G solvation = -3722.997779 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -43.49672 -41.47300 -39.78184 -37.24107 -34.93440 -34.15963 -33.36349 -32.49811 -31.67390 -30.44187 -28.53340 -27.30147 -26.45396 -24.18356 -23.79964 -22.68723 -22.37124 -21.56995 -20.36285 -19.66203 -18.52414 -18.32051 -18.00098 -17.23545 -16.89795 -16.73549 -16.26362 -15.73532 -15.47298 -15.42420 -15.15017 -15.01096 -14.55491 -14.19708 -13.96568 -13.73223 -13.69353 -13.56785 -13.50488 -13.45766 -13.16514 -12.92697 -12.71666 -12.68192 -12.57206 -12.33674 -12.06913 -11.80101 -11.61715 -11.29595 -11.23054 -11.02714 -10.96422 -10.81926 -10.50764 -9.70013 -9.39955 -8.63692 -7.83336 -5.28240 0.74079 1.47273 1.51011 1.52115 1.60259 1.66018 1.96504 2.24417 2.53943 3.29068 3.41317 3.60104 3.70984 3.76231 3.92029 3.99869 4.12412 4.14628 4.30304 4.32946 4.35429 4.39807 4.42201 4.50731 4.62107 4.66155 4.79123 4.82566 4.91224 4.96926 5.01174 5.03218 5.09601 5.17004 5.20825 5.21506 5.31223 5.40870 5.42651 5.50304 5.63006 5.64788 5.70323 5.78714 6.20817 6.42113 6.49238 7.05179 7.18343 7.90199 8.43080 9.22755 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.015074 B = 0.003707 C = 0.003184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.092279 B = 7552.396483 C = 8792.224146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.048 4.048 3 Si 0.958 3.042 4 H -0.262 1.262 5 H -0.301 1.301 6 H -0.289 1.289 7 C -0.249 4.249 8 H 0.070 0.930 9 N -0.604 5.604 10 C 0.135 3.865 11 C -0.119 4.119 12 C -0.091 4.091 13 C -0.086 4.086 14 C -0.103 4.103 15 C 0.098 3.902 16 N -0.610 5.610 17 C 0.523 3.477 18 O -0.585 6.585 19 C -0.050 4.050 20 C -0.020 4.020 21 C -0.205 4.205 22 C -0.226 4.226 23 C -0.047 4.047 24 O -0.199 6.199 25 C 0.125 3.875 26 C 0.203 3.797 27 H 0.246 0.754 28 H 0.004 0.996 29 H 0.054 0.946 30 H 0.080 0.920 31 H 0.067 0.933 32 H 0.081 0.919 33 H 0.048 0.952 34 H 0.094 0.906 35 H 0.081 0.919 36 H 0.053 0.947 37 H 0.116 0.884 38 H 0.122 0.878 39 H 0.161 0.839 40 H 0.162 0.838 41 H 0.172 0.828 42 H 0.235 0.765 43 H 0.074 0.926 44 H 0.035 0.965 45 H -0.024 1.024 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.352 -5.785 17.059 18.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.243 4.243 3 Si 0.787 3.213 4 H -0.186 1.186 5 H -0.229 1.229 6 H -0.216 1.216 7 C -0.380 4.380 8 H 0.088 0.912 9 N -0.327 5.327 10 C 0.010 3.990 11 C -0.158 4.158 12 C -0.129 4.129 13 C -0.088 4.088 14 C -0.141 4.141 15 C -0.024 4.024 16 N -0.343 5.343 17 C 0.313 3.687 18 O -0.466 6.466 19 C -0.089 4.089 20 C -0.070 4.070 21 C -0.224 4.224 22 C -0.244 4.244 23 C -0.114 4.114 24 O -0.096 6.096 25 C 0.002 3.998 26 C 0.077 3.923 27 H 0.055 0.945 28 H 0.022 0.978 29 H 0.073 0.927 30 H 0.099 0.901 31 H 0.086 0.914 32 H 0.099 0.901 33 H 0.067 0.933 34 H 0.112 0.888 35 H 0.099 0.901 36 H 0.072 0.928 37 H 0.134 0.866 38 H 0.140 0.860 39 H 0.178 0.822 40 H 0.180 0.820 41 H 0.190 0.810 42 H 0.251 0.749 43 H 0.093 0.907 44 H 0.054 0.946 45 H -0.006 1.006 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.638 -5.732 16.900 17.921 hybrid contribution -0.452 1.054 -0.655 1.321 sum 1.187 -4.678 16.245 16.947 Atomic orbital electron populations 1.70213 1.06766 1.25434 1.55961 1.25707 0.95749 1.01224 1.01605 0.85339 0.78991 0.80401 0.76560 1.18605 1.22863 1.21619 1.19504 0.92707 0.85557 1.40194 0.91240 1.44303 1.35045 1.02293 1.51026 1.21119 0.96947 0.86359 0.94607 1.21885 0.97468 0.99212 0.97206 1.21274 0.97947 0.94220 0.99446 1.21610 0.94090 0.97815 0.95266 1.22670 0.96684 0.98897 0.95801 1.22640 0.82200 0.96066 1.01484 1.48633 1.21210 1.44072 1.20347 1.20671 0.82865 0.82677 0.82536 1.90690 1.25068 1.51472 1.79328 1.20169 0.96580 1.01262 0.90918 1.21900 0.91063 0.94989 0.99009 1.21870 1.01456 1.02477 0.96586 1.22182 0.97617 1.00695 1.03941 1.24787 0.98764 1.01337 0.86484 1.83988 1.31755 1.51403 1.42468 1.21818 0.97665 0.93972 0.86378 1.20331 0.86946 0.96959 0.88092 0.94507 0.97777 0.92733 0.90106 0.91385 0.90095 0.93329 0.88770 0.90086 0.92822 0.86634 0.86028 0.82174 0.82037 0.81040 0.74927 0.90749 0.94639 1.00612 0.92302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.60 11.18 21.65 0.24 -54.36 16 2 C -0.05 -2.56 4.93 84.86 0.42 -2.14 16 3 Si 0.96 43.12 29.59 68.60 2.03 45.15 16 4 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 5 H -0.30 -13.96 7.11 99.48 0.71 -13.26 16 6 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 7 C -0.25 -12.87 9.59 84.03 0.81 -12.06 16 8 H 0.07 3.48 7.88 -2.91 -0.02 3.46 16 9 N -0.60 -28.36 2.53 -700.25 -1.77 -30.13 16 10 C 0.13 5.23 6.49 86.35 0.56 5.79 16 11 C -0.12 -3.45 5.90 30.71 0.18 -3.27 16 12 C -0.09 -2.65 4.53 30.40 0.14 -2.51 16 13 C -0.09 -2.90 0.56 -51.91 -0.03 -2.93 16 14 C -0.10 -2.92 4.91 31.88 0.16 -2.77 16 15 C 0.10 2.62 6.38 86.96 0.55 3.18 16 16 N -0.61 -18.94 3.33 -811.85 -2.70 -21.64 16 17 C 0.52 16.69 7.84 87.66 0.69 17.38 16 18 O -0.58 -23.83 16.36 -3.02 -0.05 -23.88 16 19 C -0.05 -1.15 5.24 29.10 0.15 -1.00 16 20 C -0.02 -0.52 5.81 24.83 0.14 -0.38 16 21 C -0.20 -4.83 10.81 22.19 0.24 -4.59 16 22 C -0.23 -4.71 10.91 22.19 0.24 -4.47 16 23 C -0.05 -1.01 12.09 66.97 0.81 -0.20 16 24 O -0.20 -5.70 10.65 -2.44 -0.03 -5.73 16 25 C 0.13 4.28 6.05 86.46 0.52 4.80 16 26 C 0.20 9.31 3.81 86.07 0.33 9.64 16 27 H 0.25 14.08 8.31 -92.71 -0.77 13.31 16 28 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 29 H 0.05 2.06 7.93 -2.39 -0.02 2.04 16 30 H 0.08 1.91 8.14 -2.38 -0.02 1.89 16 31 H 0.07 1.91 7.31 -2.39 -0.02 1.89 16 32 H 0.08 1.90 8.11 -2.39 -0.02 1.88 16 33 H 0.05 1.49 8.14 -2.38 -0.02 1.47 16 34 H 0.09 2.12 8.01 -2.38 -0.02 2.10 16 35 H 0.08 2.69 7.58 -2.39 -0.02 2.67 16 36 H 0.05 1.73 7.64 -2.39 -0.02 1.71 16 37 H 0.12 2.04 7.48 -2.38 -0.02 2.02 16 38 H 0.12 2.53 8.14 -2.39 -0.02 2.51 16 39 H 0.16 2.30 7.86 -2.39 -0.02 2.28 16 40 H 0.16 3.08 8.06 -2.91 -0.02 3.06 16 41 H 0.17 2.52 8.06 -2.91 -0.02 2.50 16 42 H 0.23 2.92 8.06 -2.91 -0.02 2.90 16 43 H 0.07 2.35 7.79 -2.39 -0.02 2.34 16 44 H 0.04 1.43 7.80 -2.38 -0.02 1.41 16 45 H -0.02 -1.28 8.11 -2.39 -0.02 -1.30 16 46 H 0.06 3.08 5.28 -2.39 -0.01 3.06 16 Total: -1.00 -73.12 364.66 4.60 -68.53 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: 0.96 Total: 17.59 kcal Atomic # 6 Polarization: -1.44 SS G_CDS: 5.91 Total: 4.47 kcal Atomic # 7 Polarization: -101.90 SS G_CDS: -4.23 Total: -106.13 kcal Atomic # 8 Polarization: -29.53 SS G_CDS: -0.08 Total: -29.60 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Total: -73.12 4.60 -68.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040462253.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.489 kcal (2) G-P(sol) polarization free energy of solvation -73.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds