Wall clock time and date at job start Tue Mar 31 2020 12:10:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86799 * 120.00165 * 2 1 4 4 H 1.48502 * 109.46882 * 240.00097 * 3 2 1 5 5 H 1.48501 * 109.47175 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.46960 * 119.99840 * 3 2 1 7 7 C 1.38809 * 119.99637 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99976 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00589 * 359.97438 * 7 2 1 10 10 C 1.48158 * 126.39154 * 0.02562 * 9 7 2 11 11 C 1.56476 * 107.29036 * 174.53378 * 10 9 7 12 12 C 1.53697 * 101.35911 * 338.38193 * 11 10 9 13 13 H 1.09001 * 111.10502 * 280.36916 * 12 11 10 14 14 C 1.51978 * 115.00834 * 153.19698 * 12 11 10 15 15 C 1.53889 * 107.29215 * 183.73980 * 14 12 11 16 16 N 1.46591 * 110.71110 * 51.81181 * 15 14 12 17 17 C 1.34774 * 119.75653 * 132.25397 * 16 15 14 18 18 O 1.21276 * 120.00261 * 180.02562 * 17 16 15 19 19 C 1.50704 * 119.99624 * 0.02562 * 17 16 15 20 20 C 1.53001 * 109.47095 * 179.97438 * 19 17 16 21 21 C 1.50696 * 109.47438 * 180.02562 * 20 19 17 22 22 C 1.34510 * 125.79308 * 89.71146 * 21 20 19 23 23 C 1.41384 * 106.84484 * 179.89207 * 22 21 20 24 24 C 1.34517 * 106.83555 * 0.37653 * 23 22 21 25 25 O 1.34302 * 125.78660 * 270.03001 * 21 20 19 26 26 C 1.47800 * 120.49314 * 312.27579 * 16 15 14 27 27 C 1.45499 * 126.40400 * 179.97438 * 9 7 2 28 28 H 1.08997 * 108.99054 * 93.64354 * 27 9 7 29 29 H 0.97001 * 119.99849 * 0.02562 * 1 2 3 30 30 H 1.08996 * 109.92027 * 294.33683 * 10 9 7 31 31 H 1.09000 * 109.92498 * 55.44408 * 10 9 7 32 32 H 1.08997 * 111.41104 * 220.30235 * 11 10 9 33 33 H 1.08997 * 110.93563 * 96.25758 * 11 10 9 34 34 H 1.08994 * 109.88928 * 64.28611 * 14 12 11 35 35 H 1.09004 * 109.94822 * 303.21704 * 14 12 11 36 36 H 1.09003 * 109.22824 * 291.49294 * 15 14 12 37 37 H 1.09000 * 109.19357 * 172.10990 * 15 14 12 38 38 H 1.08999 * 109.47257 * 299.99997 * 19 17 16 39 39 H 1.09003 * 109.46709 * 60.00525 * 19 17 16 40 40 H 1.08999 * 109.47252 * 300.00228 * 20 19 17 41 41 H 1.09004 * 109.47018 * 60.00044 * 20 19 17 42 42 H 1.08004 * 126.57679 * 0.03392 * 22 21 20 43 43 H 1.07997 * 126.57962 * 180.12391 * 23 22 21 44 44 H 1.07997 * 125.78530 * 179.74550 * 24 23 22 45 45 H 1.09002 * 110.06444 * 170.45374 * 26 16 15 46 46 H 1.09003 * 110.06498 * 291.91066 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0016 10 6 -0.1468 -2.5531 0.0017 11 6 -0.4433 -4.0830 -0.1392 12 6 0.8688 -4.5899 -0.7586 13 1 0.8990 -4.3926 -1.8302 14 6 1.1996 -6.0434 -0.4626 15 6 2.5791 -6.3335 -1.0799 16 7 3.5616 -5.3361 -0.6453 17 6 4.7655 -5.7370 -0.1910 18 8 5.5815 -4.9157 0.1701 19 6 5.0976 -7.2058 -0.1318 20 6 6.5145 -7.3866 0.4164 21 6 6.8469 -8.8553 0.4751 22 6 7.4142 -9.5735 -0.5107 23 6 7.5457 -10.8966 -0.0300 24 6 7.0432 -10.9096 1.2177 25 8 6.6214 -9.6704 1.5183 26 6 3.2417 -3.8943 -0.7012 27 6 1.9080 -3.7214 0.0017 28 1 1.9908 -4.0722 1.0304 29 1 -0.4850 0.8401 -0.0004 30 1 -0.5629 -2.1739 0.9351 31 1 -0.5807 -2.0176 -0.8427 32 1 -1.2855 -4.2652 -0.8067 33 1 -0.6154 -4.5379 0.8363 34 1 0.4484 -6.6934 -0.9110 35 1 1.2341 -6.2050 0.6149 36 1 2.4985 -6.3082 -2.1667 37 1 2.9104 -7.3238 -0.7675 38 1 4.3874 -7.7128 0.5215 39 1 5.0387 -7.6322 -1.1332 40 1 7.2244 -6.8796 -0.2372 41 1 6.5739 -6.9600 1.4177 42 1 7.7140 -9.2088 -1.4821 43 1 7.9651 -11.7365 -0.5638 44 1 6.9880 -11.7706 1.8673 45 1 4.0128 -3.3200 -0.1876 46 1 3.1620 -3.5688 -1.7384 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041932969.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:16 Heat of formation + Delta-G solvation = 6.469399 kcal Electronic energy + Delta-G solvation = -26864.914476 eV Core-core repulsion = 23142.849379 eV Total energy + Delta-G solvation = -3722.065097 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.77243 -40.21065 -38.30682 -35.37987 -34.26154 -33.00512 -32.89041 -31.26498 -29.94066 -28.76262 -28.27078 -25.06572 -24.63765 -23.13766 -22.24794 -21.96597 -20.60584 -20.11720 -19.68574 -18.79591 -17.73759 -16.91000 -16.43643 -16.25123 -15.76587 -15.50789 -14.81525 -14.66430 -14.37835 -14.07943 -13.88037 -13.60971 -13.16747 -13.04555 -12.98714 -12.90385 -12.57802 -12.46148 -12.27105 -12.14652 -11.85046 -11.52431 -11.29691 -11.26042 -10.92349 -10.80124 -10.72667 -10.16580 -10.15209 -9.98028 -9.84622 -9.71439 -9.60719 -9.46962 -8.67132 -8.61882 -8.42418 -6.84851 -5.70953 -3.04755 1.49828 2.38029 2.74793 2.75592 3.17005 3.43470 3.47501 3.49147 4.33205 4.51675 4.67455 4.75799 4.77616 4.81613 4.91032 4.95341 5.02534 5.14949 5.28717 5.40636 5.48664 5.51697 5.59010 5.62371 5.66610 5.74283 5.77446 5.78202 5.91623 5.95329 6.02129 6.07602 6.12811 6.17048 6.28260 6.37648 6.48679 6.56182 6.71330 6.74684 6.93005 7.06002 7.54947 7.56932 7.61994 7.81727 8.23834 8.31603 9.20010 9.82900 10.49649 11.41280 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.021219 B = 0.002817 C = 0.002568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.249558 B = 9938.583917 C =10900.480822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.006 4.006 3 Si 0.911 3.089 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.228 4.228 8 H 0.079 0.921 9 N -0.592 5.592 10 C 0.178 3.822 11 C -0.139 4.139 12 C -0.112 4.112 13 H 0.076 0.924 14 C -0.121 4.121 15 C 0.107 3.893 16 N -0.606 5.606 17 C 0.511 3.489 18 O -0.542 6.542 19 C -0.136 4.136 20 C -0.026 4.026 21 C -0.005 4.005 22 C -0.213 4.213 23 C -0.214 4.214 24 C -0.047 4.047 25 O -0.175 6.175 26 C 0.116 3.884 27 C 0.157 3.843 28 H 0.023 0.977 29 H 0.253 0.747 30 H 0.038 0.962 31 H 0.055 0.945 32 H 0.060 0.940 33 H 0.055 0.945 34 H 0.073 0.927 35 H 0.067 0.933 36 H 0.065 0.935 37 H 0.079 0.921 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.102 0.898 41 H 0.090 0.910 42 H 0.148 0.852 43 H 0.147 0.853 44 H 0.201 0.799 45 H 0.092 0.908 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.796 -22.596 -2.136 23.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.203 4.203 3 Si 0.741 3.259 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.356 4.356 8 H 0.097 0.903 9 N -0.318 5.318 10 C 0.053 3.947 11 C -0.177 4.177 12 C -0.132 4.132 13 H 0.094 0.906 14 C -0.159 4.159 15 C -0.016 4.016 16 N -0.339 5.339 17 C 0.298 3.702 18 O -0.420 6.420 19 C -0.176 4.176 20 C -0.064 4.064 21 C -0.055 4.055 22 C -0.232 4.232 23 C -0.233 4.233 24 C -0.114 4.114 25 O -0.071 6.071 26 C -0.006 4.006 27 C 0.048 3.952 28 H 0.041 0.959 29 H 0.063 0.937 30 H 0.056 0.944 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.091 0.909 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.097 0.903 38 H 0.114 0.886 39 H 0.114 0.886 40 H 0.121 0.879 41 H 0.109 0.891 42 H 0.165 0.835 43 H 0.164 0.836 44 H 0.218 0.782 45 H 0.110 0.890 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 8.025 -21.783 -1.676 23.274 hybrid contribution 0.405 0.581 -0.229 0.744 sum 8.429 -21.202 -1.905 22.896 Atomic orbital electron populations 1.69933 1.04890 1.25189 1.56961 1.24784 0.95688 0.97657 1.02143 0.86214 0.78479 0.83172 0.78037 1.21100 1.21632 1.21095 1.18999 0.90405 0.82258 1.43969 0.90314 1.44158 1.01644 0.99214 1.86737 1.21744 0.83641 0.88311 1.00971 1.22910 0.95847 0.99702 0.99259 1.22245 0.97351 0.93394 1.00222 0.90583 1.21812 0.95317 0.97532 1.01251 1.21748 0.89417 0.91200 0.99218 1.48295 1.14046 1.07937 1.63650 1.20494 0.81817 0.90716 0.77128 1.90710 1.47890 1.55094 1.48292 1.21699 0.97750 0.94337 1.03774 1.19882 0.96466 0.85513 1.04507 1.22529 1.02931 0.93631 0.86387 1.21630 1.06857 0.93751 1.00975 1.21839 1.06755 0.98344 0.96386 1.24025 1.02961 0.86233 0.98189 1.84043 1.64866 1.18736 1.39488 1.21717 0.99045 0.78458 1.01399 1.20966 0.91052 0.87598 0.95631 0.95934 0.93707 0.94388 0.92673 0.92158 0.92580 0.90856 0.91405 0.91628 0.90292 0.88553 0.88571 0.87937 0.89105 0.83453 0.83568 0.78239 0.88961 0.91224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.04 10.43 55.49 0.58 -26.47 16 2 C -0.01 -0.18 5.49 -17.43 -0.10 -0.28 16 3 Si 0.91 22.40 29.55 -169.99 -5.02 17.38 16 4 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.28 -6.97 7.11 56.52 0.40 -6.56 16 7 C -0.23 -6.34 9.88 -15.06 -0.15 -6.49 16 8 H 0.08 2.14 7.41 -52.48 -0.39 1.75 16 9 N -0.59 -14.93 3.35 -162.22 -0.54 -15.47 16 10 C 0.18 4.25 5.49 -1.26 -0.01 4.24 16 11 C -0.14 -2.49 6.64 -24.50 -0.16 -2.65 16 12 C -0.11 -1.87 2.57 -89.55 -0.23 -2.10 16 13 H 0.08 1.31 8.13 -51.93 -0.42 0.88 16 14 C -0.12 -1.49 5.73 -26.79 -0.15 -1.64 16 15 C 0.11 1.20 6.22 -3.53 -0.02 1.18 16 16 N -0.61 -9.02 3.01 -172.76 -0.52 -9.54 16 17 C 0.51 7.53 7.67 -10.98 -0.08 7.45 16 18 O -0.54 -10.14 15.35 5.56 0.09 -10.05 16 19 C -0.14 -1.38 4.01 -27.88 -0.11 -1.50 16 20 C -0.03 -0.27 5.04 -27.88 -0.14 -0.41 16 21 C 0.00 -0.05 6.57 -35.63 -0.23 -0.28 16 22 C -0.21 -2.01 10.81 -39.70 -0.43 -2.43 16 23 C -0.21 -1.79 10.91 -39.70 -0.43 -2.22 16 24 C -0.05 -0.38 12.09 29.42 0.36 -0.02 16 25 O -0.18 -1.88 10.65 5.71 0.06 -1.82 16 26 C 0.12 2.19 5.68 -3.97 -0.02 2.16 16 27 C 0.16 3.20 2.76 -67.88 -0.19 3.01 16 28 H 0.02 0.51 7.95 -51.93 -0.41 0.10 16 29 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 30 H 0.04 1.00 7.77 -51.93 -0.40 0.60 16 31 H 0.06 1.45 7.19 -51.93 -0.37 1.08 16 32 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.06 0.95 8.12 -51.93 -0.42 0.53 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.07 0.87 8.00 -51.93 -0.42 0.46 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.08 0.67 5.85 -51.93 -0.30 0.36 16 38 H 0.10 0.89 7.55 -51.93 -0.39 0.49 16 39 H 0.10 0.79 8.00 -51.93 -0.42 0.38 16 40 H 0.10 1.06 8.10 -51.93 -0.42 0.64 16 41 H 0.09 1.05 8.10 -51.93 -0.42 0.63 16 42 H 0.15 1.16 8.06 -52.48 -0.42 0.74 16 43 H 0.15 0.90 8.06 -52.49 -0.42 0.47 16 44 H 0.20 0.88 8.06 -52.49 -0.42 0.46 16 45 H 0.09 1.97 6.76 -51.93 -0.35 1.62 16 46 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 LS Contribution 365.19 15.07 5.50 5.50 Total: -1.00 -32.99 365.19 -9.20 -42.19 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: -7.24 Total: 0.26 kcal Atomic # 6 Polarization: 0.11 SS G_CDS: -2.11 Total: -2.00 kcal Atomic # 7 Polarization: -50.99 SS G_CDS: -0.48 Total: -51.47 kcal Atomic # 8 Polarization: -12.02 SS G_CDS: 0.15 Total: -11.87 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.99 -9.20 -42.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041932969.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.663 kcal (2) G-P(sol) polarization free energy of solvation -32.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.194 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds