Wall clock time and date at job start Tue Mar 31 2020 12:10:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86799 * 120.00165 * 2 1 4 4 H 1.48502 * 109.46882 * 240.00097 * 3 2 1 5 5 H 1.48501 * 109.47175 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.46960 * 119.99840 * 3 2 1 7 7 C 1.38809 * 119.99637 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99976 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00589 * 359.97438 * 7 2 1 10 10 C 1.48158 * 126.39154 * 0.02562 * 9 7 2 11 11 C 1.56476 * 107.29036 * 174.53378 * 10 9 7 12 12 C 1.53697 * 101.35911 * 338.38193 * 11 10 9 13 13 H 1.09001 * 111.10502 * 280.36916 * 12 11 10 14 14 C 1.51978 * 115.00834 * 153.19698 * 12 11 10 15 15 C 1.53889 * 107.29215 * 183.73980 * 14 12 11 16 16 N 1.46591 * 110.71110 * 51.81181 * 15 14 12 17 17 C 1.34774 * 119.75653 * 132.25397 * 16 15 14 18 18 O 1.21276 * 120.00261 * 180.02562 * 17 16 15 19 19 C 1.50704 * 119.99624 * 0.02562 * 17 16 15 20 20 C 1.53001 * 109.47095 * 179.97438 * 19 17 16 21 21 C 1.50696 * 109.47438 * 180.02562 * 20 19 17 22 22 C 1.34510 * 125.79308 * 89.71146 * 21 20 19 23 23 C 1.41384 * 106.84484 * 179.89207 * 22 21 20 24 24 C 1.34517 * 106.83555 * 0.37653 * 23 22 21 25 25 O 1.34302 * 125.78660 * 270.03001 * 21 20 19 26 26 C 1.47800 * 120.49314 * 312.27579 * 16 15 14 27 27 C 1.45499 * 126.40400 * 179.97438 * 9 7 2 28 28 H 1.08997 * 108.99054 * 93.64354 * 27 9 7 29 29 H 0.97001 * 119.99849 * 0.02562 * 1 2 3 30 30 H 1.08996 * 109.92027 * 294.33683 * 10 9 7 31 31 H 1.09000 * 109.92498 * 55.44408 * 10 9 7 32 32 H 1.08997 * 111.41104 * 220.30235 * 11 10 9 33 33 H 1.08997 * 110.93563 * 96.25758 * 11 10 9 34 34 H 1.08994 * 109.88928 * 64.28611 * 14 12 11 35 35 H 1.09004 * 109.94822 * 303.21704 * 14 12 11 36 36 H 1.09003 * 109.22824 * 291.49294 * 15 14 12 37 37 H 1.09000 * 109.19357 * 172.10990 * 15 14 12 38 38 H 1.08999 * 109.47257 * 299.99997 * 19 17 16 39 39 H 1.09003 * 109.46709 * 60.00525 * 19 17 16 40 40 H 1.08999 * 109.47252 * 300.00228 * 20 19 17 41 41 H 1.09004 * 109.47018 * 60.00044 * 20 19 17 42 42 H 1.08004 * 126.57679 * 0.03392 * 22 21 20 43 43 H 1.07997 * 126.57962 * 180.12391 * 23 22 21 44 44 H 1.07997 * 125.78530 * 179.74550 * 24 23 22 45 45 H 1.09002 * 110.06444 * 170.45374 * 26 16 15 46 46 H 1.09003 * 110.06498 * 291.91066 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0016 10 6 -0.1468 -2.5531 0.0017 11 6 -0.4433 -4.0830 -0.1392 12 6 0.8688 -4.5899 -0.7586 13 1 0.8990 -4.3926 -1.8302 14 6 1.1996 -6.0434 -0.4626 15 6 2.5791 -6.3335 -1.0799 16 7 3.5616 -5.3361 -0.6453 17 6 4.7655 -5.7370 -0.1910 18 8 5.5815 -4.9157 0.1701 19 6 5.0976 -7.2058 -0.1318 20 6 6.5145 -7.3866 0.4164 21 6 6.8469 -8.8553 0.4751 22 6 7.4142 -9.5735 -0.5107 23 6 7.5457 -10.8966 -0.0300 24 6 7.0432 -10.9096 1.2177 25 8 6.6214 -9.6704 1.5183 26 6 3.2417 -3.8943 -0.7012 27 6 1.9080 -3.7214 0.0017 28 1 1.9908 -4.0722 1.0304 29 1 -0.4850 0.8401 -0.0004 30 1 -0.5629 -2.1739 0.9351 31 1 -0.5807 -2.0176 -0.8427 32 1 -1.2855 -4.2652 -0.8067 33 1 -0.6154 -4.5379 0.8363 34 1 0.4484 -6.6934 -0.9110 35 1 1.2341 -6.2050 0.6149 36 1 2.4985 -6.3082 -2.1667 37 1 2.9104 -7.3238 -0.7675 38 1 4.3874 -7.7128 0.5215 39 1 5.0387 -7.6322 -1.1332 40 1 7.2244 -6.8796 -0.2372 41 1 6.5739 -6.9600 1.4177 42 1 7.7140 -9.2088 -1.4821 43 1 7.9651 -11.7365 -0.5638 44 1 6.9880 -11.7706 1.8673 45 1 4.0128 -3.3200 -0.1876 46 1 3.1620 -3.5688 -1.7384 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041932969.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:14 Heat of formation + Delta-G solvation = -13.642097 kcal Electronic energy + Delta-G solvation = -26865.786576 eV Core-core repulsion = 23142.849379 eV Total energy + Delta-G solvation = -3722.937197 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -43.43982 -41.47741 -39.74479 -36.84468 -35.12108 -34.65247 -33.67845 -32.87217 -31.26157 -30.24544 -29.39635 -26.55373 -26.10819 -24.38149 -23.52988 -22.61055 -21.84445 -21.39565 -21.08642 -19.94772 -18.75077 -18.42480 -17.63990 -17.10967 -16.93019 -16.73252 -16.53825 -15.91720 -15.66386 -15.49846 -15.08886 -14.93502 -14.44151 -14.35873 -13.83996 -13.79569 -13.67419 -13.60575 -13.42322 -13.26934 -13.12939 -13.07435 -12.93849 -12.71797 -12.48515 -12.14525 -12.07459 -11.98500 -11.77001 -11.52981 -11.32586 -11.02542 -10.86838 -10.77887 -10.74048 -9.67388 -9.33599 -8.91988 -7.87789 -5.22739 0.82996 1.42127 1.44939 1.51221 1.60875 1.73908 1.92532 2.21191 2.48169 3.30135 3.42868 3.54523 3.81055 3.88856 3.94373 3.97282 4.05704 4.09090 4.21044 4.28853 4.30580 4.33972 4.37221 4.54637 4.58370 4.62752 4.76047 4.76201 4.85474 4.92957 4.94411 4.98238 5.01746 5.11757 5.12400 5.16343 5.25748 5.29332 5.38239 5.50708 5.61668 5.65651 5.67585 5.77283 6.18026 6.27548 6.43900 7.06732 7.15841 7.75356 8.42376 9.22885 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.021219 B = 0.002817 C = 0.002568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.249558 B = 9938.583917 C =10900.480822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.063 4.063 3 Si 0.972 3.028 4 H -0.276 1.276 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.238 4.238 8 H 0.074 0.926 9 N -0.614 5.614 10 C 0.179 3.821 11 C -0.122 4.122 12 C -0.096 4.096 13 H 0.075 0.925 14 C -0.112 4.112 15 C 0.101 3.899 16 N -0.605 5.605 17 C 0.505 3.495 18 O -0.592 6.592 19 C -0.120 4.120 20 C -0.021 4.021 21 C -0.025 4.025 22 C -0.214 4.214 23 C -0.226 4.226 24 C -0.045 4.045 25 O -0.195 6.195 26 C 0.128 3.872 27 C 0.148 3.852 28 H 0.006 0.994 29 H 0.247 0.753 30 H -0.001 1.001 31 H 0.022 0.978 32 H 0.087 0.913 33 H 0.069 0.931 34 H 0.113 0.887 35 H 0.065 0.935 36 H 0.085 0.915 37 H 0.120 0.880 38 H 0.116 0.884 39 H 0.127 0.873 40 H 0.098 0.902 41 H 0.071 0.929 42 H 0.159 0.841 43 H 0.168 0.832 44 H 0.234 0.766 45 H 0.055 0.945 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.048 -26.526 -3.199 27.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.256 4.256 3 Si 0.800 3.200 4 H -0.202 1.202 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.367 4.367 8 H 0.092 0.908 9 N -0.340 5.340 10 C 0.055 3.945 11 C -0.160 4.160 12 C -0.116 4.116 13 H 0.093 0.907 14 C -0.151 4.151 15 C -0.020 4.020 16 N -0.338 5.338 17 C 0.295 3.705 18 O -0.473 6.473 19 C -0.159 4.159 20 C -0.059 4.059 21 C -0.075 4.075 22 C -0.233 4.233 23 C -0.245 4.245 24 C -0.112 4.112 25 O -0.092 6.092 26 C 0.005 3.995 27 C 0.040 3.960 28 H 0.023 0.977 29 H 0.057 0.943 30 H 0.017 0.983 31 H 0.040 0.960 32 H 0.106 0.894 33 H 0.088 0.912 34 H 0.132 0.868 35 H 0.084 0.916 36 H 0.103 0.897 37 H 0.137 0.863 38 H 0.134 0.866 39 H 0.145 0.855 40 H 0.116 0.884 41 H 0.089 0.911 42 H 0.177 0.823 43 H 0.185 0.815 44 H 0.250 0.750 45 H 0.073 0.927 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 8.279 -25.776 -2.754 27.213 hybrid contribution 0.379 1.753 0.149 1.799 sum 8.658 -24.023 -2.606 25.668 Atomic orbital electron populations 1.70144 1.06067 1.25335 1.58204 1.25565 0.96588 1.00730 1.02684 0.85251 0.77281 0.79298 0.78145 1.20239 1.21593 1.20851 1.19270 0.90575 0.83819 1.43018 0.90785 1.44434 1.02580 1.00406 1.86532 1.21574 0.82869 0.92570 0.97537 1.22785 0.97606 0.94667 1.00934 1.22181 0.94464 0.95689 0.99257 0.90699 1.21823 0.97038 0.94448 1.01744 1.22119 0.87810 0.91660 1.00408 1.48375 1.15199 1.06603 1.63641 1.21378 0.80980 0.92439 0.75694 1.90692 1.49424 1.56887 1.50297 1.21686 0.97812 0.90463 1.05955 1.19740 0.96781 0.86056 1.03342 1.22414 1.04684 0.93407 0.86957 1.21918 1.05898 0.94281 1.01248 1.22179 1.06992 0.98571 0.96735 1.24780 1.01589 0.86080 0.98755 1.84029 1.65484 1.19767 1.39935 1.21243 0.96925 0.81324 1.00058 1.21123 0.93303 0.86112 0.95492 0.97664 0.94327 0.98304 0.95982 0.89437 0.91201 0.86827 0.91578 0.89673 0.86252 0.86597 0.85453 0.88394 0.91059 0.82291 0.81473 0.74978 0.92672 0.91833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.18 10.43 21.65 0.23 -57.95 16 2 C -0.06 -3.67 5.49 84.86 0.47 -3.21 16 3 Si 0.97 47.64 29.55 68.60 2.03 49.67 16 4 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 5 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 6 H -0.28 -13.60 7.11 99.48 0.71 -12.89 16 7 C -0.24 -13.83 9.88 84.03 0.83 -13.00 16 8 H 0.07 4.25 7.41 -2.91 -0.02 4.23 16 9 N -0.61 -32.29 3.35 -667.14 -2.23 -34.52 16 10 C 0.18 8.90 5.49 87.27 0.48 9.38 16 11 C -0.12 -4.20 6.64 32.04 0.21 -3.99 16 12 C -0.10 -3.01 2.57 -10.10 -0.03 -3.04 16 13 H 0.07 2.40 8.13 -2.39 -0.02 2.38 16 14 C -0.11 -2.28 5.73 30.56 0.17 -2.10 16 15 C 0.10 1.82 6.22 86.66 0.54 2.36 16 16 N -0.61 -17.10 3.01 -818.88 -2.47 -19.57 16 17 C 0.51 14.41 7.67 87.66 0.67 15.09 16 18 O -0.59 -22.84 15.35 -3.02 -0.05 -22.89 16 19 C -0.12 -2.11 4.01 29.85 0.12 -1.99 16 20 C -0.02 -0.43 5.04 29.85 0.15 -0.28 16 21 C -0.02 -0.47 6.57 24.83 0.16 -0.31 16 22 C -0.21 -3.50 10.81 22.19 0.24 -3.26 16 23 C -0.23 -3.10 10.91 22.19 0.24 -2.86 16 24 C -0.05 -0.61 12.09 66.97 0.81 0.20 16 25 O -0.20 -3.80 10.65 -2.49 -0.03 -3.83 16 26 C 0.13 4.95 5.68 85.72 0.49 5.44 16 27 C 0.15 6.12 2.76 45.56 0.13 6.25 16 28 H 0.01 0.26 7.95 -2.39 -0.02 0.24 16 29 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 30 H 0.00 -0.07 7.77 -2.39 -0.02 -0.09 16 31 H 0.02 1.22 7.19 -2.39 -0.02 1.20 16 32 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 33 H 0.07 2.23 8.12 -2.39 -0.02 2.21 16 34 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.07 1.42 8.00 -2.38 -0.02 1.40 16 36 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.12 1.28 5.85 -2.39 -0.01 1.26 16 38 H 0.12 1.66 7.55 -2.39 -0.02 1.64 16 39 H 0.13 1.51 8.00 -2.39 -0.02 1.50 16 40 H 0.10 2.00 8.10 -2.39 -0.02 1.98 16 41 H 0.07 1.68 8.10 -2.38 -0.02 1.66 16 42 H 0.16 2.09 8.06 -2.91 -0.02 2.07 16 43 H 0.17 1.47 8.06 -2.91 -0.02 1.45 16 44 H 0.23 1.19 8.06 -2.91 -0.02 1.17 16 45 H 0.05 2.51 6.76 -2.39 -0.02 2.50 16 46 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 Total: -1.00 -78.56 365.19 4.13 -74.44 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: 0.96 Total: 9.97 kcal Atomic # 6 Polarization: -1.00 SS G_CDS: 5.69 Total: 4.68 kcal Atomic # 7 Polarization: -107.56 SS G_CDS: -4.48 Total: -112.04 kcal Atomic # 8 Polarization: -26.64 SS G_CDS: -0.07 Total: -26.71 kcal Atomic # 14 Polarization: 47.64 SS G_CDS: 2.03 Total: 49.67 kcal Total: -78.56 4.13 -74.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041932969.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.794 kcal (2) G-P(sol) polarization free energy of solvation -78.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds