Wall clock time and date at job start Tue Mar 31 2020 12:25:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 119.99964 * 2 1 4 4 H 1.48503 * 109.47625 * 274.99126 * 3 2 1 5 5 H 1.48505 * 109.47069 * 34.98732 * 3 2 1 6 6 H 1.48504 * 109.47303 * 154.98811 * 3 2 1 7 7 C 1.38813 * 120.00394 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00505 * 186.70844 * 7 2 1 9 9 N 1.36944 * 119.99498 * 6.69993 * 7 2 1 10 10 C 1.47433 * 126.06259 * 354.18304 * 9 7 2 11 11 C 1.54498 * 107.14721 * 181.64426 * 10 9 7 12 12 C 1.56028 * 102.61546 * 22.84668 * 11 10 9 13 13 H 1.09000 * 112.86390 * 202.21496 * 12 11 10 14 14 C 1.53096 * 106.38973 * 78.38319 * 12 11 10 15 15 C 1.52832 * 110.58739 * 195.44953 * 14 12 11 16 16 N 1.47155 * 107.97785 * 57.34027 * 15 14 12 17 17 C 1.34776 * 121.21551 * 122.70422 * 16 15 14 18 18 O 1.21284 * 119.99559 * 180.02562 * 17 16 15 19 19 C 1.50701 * 120.00391 * 0.02562 * 17 16 15 20 20 C 1.53001 * 109.47306 * 180.02562 * 19 17 16 21 21 C 1.50701 * 109.47306 * 179.97438 * 20 19 17 22 22 C 1.41379 * 126.58001 * 269.98356 * 21 20 19 23 23 C 1.34512 * 106.83930 * 180.02562 * 22 21 20 24 24 O 1.34302 * 108.42416 * 0.02562 * 23 22 21 25 25 C 1.34305 * 109.47513 * 359.97438 * 24 23 22 26 26 C 1.46756 * 117.55965 * 302.97476 * 16 15 14 27 27 C 1.46467 * 126.05431 * 174.21325 * 9 7 2 28 28 H 1.08994 * 108.43076 * 269.88246 * 27 9 7 29 29 H 0.96994 * 120.00135 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.90136 * 62.25899 * 10 9 7 31 31 H 1.09002 * 110.04418 * 301.10616 * 10 9 7 32 32 H 1.09003 * 110.78212 * 264.56826 * 11 10 9 33 33 H 1.08996 * 110.94378 * 141.20491 * 11 10 9 34 34 H 1.09001 * 109.25056 * 75.16350 * 14 12 11 35 35 H 1.09000 * 109.22238 * 315.71899 * 14 12 11 36 36 H 1.09001 * 109.75811 * 297.72748 * 15 14 12 37 37 H 1.08992 * 109.80418 * 176.99140 * 15 14 12 38 38 H 1.08999 * 109.46888 * 59.99884 * 19 17 16 39 39 H 1.09000 * 109.46994 * 300.00127 * 19 17 16 40 40 H 1.08999 * 109.47285 * 60.00074 * 20 19 17 41 41 H 1.09000 * 109.47154 * 299.99976 * 20 19 17 42 42 H 1.08002 * 126.57845 * 0.05680 * 22 21 20 43 43 H 1.07999 * 125.78743 * 179.97438 * 23 22 21 44 44 H 1.08003 * 125.79140 * 179.97438 * 25 24 23 45 45 H 1.09003 * 109.22834 * 172.58879 * 26 16 15 46 46 H 1.08996 * 109.23080 * 291.95026 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3923 2.1074 -1.3947 5 1 1.5043 2.6199 0.8028 6 1 3.5965 1.4121 0.5920 7 6 2.0104 -1.2021 -0.0005 8 1 3.0848 -1.2054 0.1087 9 7 1.3326 -2.3839 -0.1394 10 6 -0.1324 -2.5451 -0.1764 11 6 -0.4212 -4.0575 -0.3039 12 6 0.8838 -4.7022 0.2582 13 1 1.0363 -5.7233 -0.0915 14 6 0.7869 -4.6139 1.7835 15 6 2.1526 -4.8601 2.4239 16 7 3.0955 -3.8715 1.8771 17 6 3.7726 -3.0311 2.6844 18 8 4.5441 -2.2245 2.2100 19 6 3.5712 -3.0937 4.1766 20 6 4.4507 -2.0413 4.8546 21 6 4.2488 -2.1035 6.3467 22 6 3.2940 -1.3811 7.0986 23 6 3.4617 -1.7359 8.3852 24 8 4.4622 -2.6294 8.4522 25 6 4.9432 -2.8563 7.2189 26 6 3.2669 -3.8301 0.4202 27 6 1.9348 -3.7120 -0.2770 28 1 2.0886 -3.9125 -1.3373 29 1 -0.4850 0.8400 0.0004 30 1 -0.5424 -2.0152 -1.0361 31 1 -0.5740 -2.1592 0.7424 32 1 -0.5717 -4.3359 -1.3470 33 1 -1.2836 -4.3417 0.2989 34 1 0.0811 -5.3629 2.1427 35 1 0.4320 -3.6221 2.0637 36 1 2.4951 -5.8671 2.1856 37 1 2.0802 -4.7418 3.5050 38 1 3.8449 -4.0847 4.5389 39 1 2.5248 -2.8976 4.4105 40 1 4.1766 -1.0505 4.4923 41 1 5.4972 -2.2370 4.6208 42 1 2.5688 -0.6794 6.7137 43 1 2.8895 -1.3645 9.2225 44 1 5.7509 -3.5285 6.9698 45 1 3.8860 -2.9728 0.1558 46 1 3.7611 -4.7440 0.0907 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042002323.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:22 Heat of formation + Delta-G solvation = 6.627896 kcal Electronic energy + Delta-G solvation = -27897.796232 eV Core-core repulsion = 24175.738008 eV Total energy + Delta-G solvation = -3722.058224 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.57712 -39.94458 -38.12378 -34.98661 -34.72625 -32.79754 -31.64185 -31.00013 -29.57321 -28.70442 -28.34202 -25.11747 -24.52193 -23.15527 -22.49108 -21.61923 -20.30224 -19.95622 -19.40923 -18.14458 -17.55817 -16.53229 -16.47877 -15.97833 -15.44851 -15.15835 -14.87425 -14.71174 -14.28041 -13.92552 -13.83212 -13.50359 -12.99983 -12.85254 -12.81772 -12.63478 -12.31824 -12.10508 -11.91992 -11.81372 -11.53608 -11.33518 -11.22574 -10.89435 -10.79323 -10.75374 -10.66800 -10.06866 -9.83336 -9.80812 -9.70191 -9.61503 -9.46941 -9.17455 -8.57455 -8.48733 -8.06242 -6.73169 -5.62633 -2.93467 1.71173 2.55808 3.08676 3.18332 3.48812 3.54403 3.54760 3.61096 4.60677 4.70647 4.77505 4.97491 5.07268 5.09141 5.21740 5.29271 5.33438 5.38624 5.53777 5.54784 5.65013 5.72070 5.73766 5.76977 5.80087 5.86226 6.00512 6.04546 6.09626 6.16248 6.24319 6.28858 6.31393 6.32069 6.46863 6.50682 6.53576 6.65309 6.78014 6.96396 7.06893 7.14261 7.62462 7.69178 7.94667 7.97320 8.33108 8.75551 9.32273 9.93195 10.58036 11.50244 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.011753 B = 0.004527 C = 0.003776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2381.718650 B = 6184.146518 C = 7412.836344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.008 4.008 3 Si 0.901 3.099 4 H -0.291 1.291 5 H -0.294 1.294 6 H -0.277 1.277 7 C -0.214 4.214 8 H 0.084 0.916 9 N -0.588 5.588 10 C 0.178 3.822 11 C -0.144 4.144 12 C -0.101 4.101 13 H 0.075 0.925 14 C -0.124 4.124 15 C 0.111 3.889 16 N -0.596 5.596 17 C 0.520 3.480 18 O -0.538 6.538 19 C -0.129 4.129 20 C -0.037 4.037 21 C -0.170 4.170 22 C -0.205 4.205 23 C -0.048 4.048 24 O -0.181 6.181 25 C -0.047 4.047 26 C 0.113 3.887 27 C 0.154 3.846 28 H 0.026 0.974 29 H 0.249 0.751 30 H 0.043 0.957 31 H 0.041 0.959 32 H 0.053 0.947 33 H 0.058 0.942 34 H 0.060 0.940 35 H 0.080 0.920 36 H 0.062 0.938 37 H 0.077 0.923 38 H 0.085 0.915 39 H 0.092 0.908 40 H 0.083 0.917 41 H 0.077 0.923 42 H 0.149 0.851 43 H 0.200 0.800 44 H 0.200 0.800 45 H 0.095 0.905 46 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.019 -11.904 12.106 17.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.203 4.203 3 Si 0.732 3.268 4 H -0.218 1.218 5 H -0.220 1.220 6 H -0.202 1.202 7 C -0.342 4.342 8 H 0.101 0.899 9 N -0.314 5.314 10 C 0.054 3.946 11 C -0.182 4.182 12 C -0.121 4.121 13 H 0.093 0.907 14 C -0.162 4.162 15 C -0.012 4.012 16 N -0.329 5.329 17 C 0.308 3.692 18 O -0.415 6.415 19 C -0.169 4.169 20 C -0.074 4.074 21 C -0.171 4.171 22 C -0.224 4.224 23 C -0.115 4.115 24 O -0.077 6.077 25 C -0.115 4.115 26 C -0.011 4.011 27 C 0.046 3.954 28 H 0.043 0.957 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.098 0.902 36 H 0.081 0.919 37 H 0.095 0.905 38 H 0.103 0.897 39 H 0.110 0.890 40 H 0.101 0.899 41 H 0.095 0.905 42 H 0.167 0.833 43 H 0.217 0.783 44 H 0.217 0.783 45 H 0.113 0.887 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.502 -11.343 12.126 17.204 hybrid contribution -0.015 1.021 -0.209 1.042 sum 4.487 -10.322 11.917 16.392 Atomic orbital electron populations 1.69972 1.04833 1.24716 1.57798 1.24715 0.95549 0.97434 1.02626 0.86213 0.79243 0.83925 0.77387 1.21829 1.22047 1.20241 1.19103 0.91332 0.82096 1.41643 0.89865 1.44305 1.01329 1.00225 1.85524 1.21208 0.84492 0.88309 1.00637 1.23164 0.96122 0.99560 0.99390 1.22364 0.97205 0.97597 0.94920 0.90684 1.21837 0.95747 1.03072 0.95514 1.21636 0.89843 0.91576 0.98149 1.47831 1.42498 1.35636 1.06971 1.20384 0.80265 0.79918 0.88642 1.90683 1.37301 1.36561 1.76908 1.21602 1.02429 1.00578 0.92265 1.19724 1.00184 1.00217 0.87324 1.20577 0.98959 1.00479 0.97104 1.21869 1.02812 1.04560 0.93206 1.23988 0.93162 0.95191 0.99179 1.84043 1.41727 1.50428 1.31531 1.23863 1.02445 1.04136 0.81033 1.21298 0.98888 1.01773 0.79129 1.20592 0.91202 0.87566 0.96059 0.95684 0.94096 0.93926 0.94110 0.92771 0.92351 0.92116 0.90163 0.91946 0.90470 0.89673 0.89006 0.89861 0.90485 0.83349 0.78306 0.78316 0.88689 0.92986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.56 10.43 55.49 0.58 -26.98 16 2 C -0.01 -0.22 5.48 -17.43 -0.10 -0.32 16 3 Si 0.90 23.41 29.56 -169.99 -5.02 18.39 16 4 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 5 H -0.29 -7.65 7.11 56.52 0.40 -7.25 16 6 H -0.28 -7.26 7.11 56.52 0.40 -6.86 16 7 C -0.21 -5.99 9.70 -15.06 -0.15 -6.14 16 8 H 0.08 2.41 6.45 -52.49 -0.34 2.07 16 9 N -0.59 -14.57 3.19 -164.68 -0.53 -15.10 16 10 C 0.18 4.24 4.61 -2.75 -0.01 4.23 16 11 C -0.14 -2.59 6.32 -24.32 -0.15 -2.74 16 12 C -0.10 -1.65 3.68 -88.43 -0.33 -1.97 16 13 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 14 C -0.12 -1.86 5.04 -26.77 -0.13 -1.99 16 15 C 0.11 1.49 6.36 -3.77 -0.02 1.46 16 16 N -0.60 -10.23 2.97 -174.36 -0.52 -10.75 16 17 C 0.52 9.50 7.72 -10.99 -0.08 9.42 16 18 O -0.54 -12.02 15.44 5.55 0.09 -11.94 16 19 C -0.13 -1.79 4.05 -27.88 -0.11 -1.91 16 20 C -0.04 -0.51 5.02 -27.88 -0.14 -0.65 16 21 C -0.17 -2.12 5.42 -104.74 -0.57 -2.68 16 22 C -0.21 -2.46 10.87 -39.70 -0.43 -2.89 16 23 C -0.05 -0.49 12.09 29.42 0.36 -0.13 16 24 O -0.18 -2.03 10.65 5.71 0.06 -1.97 16 25 C -0.05 -0.51 12.01 29.42 0.35 -0.16 16 26 C 0.11 2.10 5.64 -5.00 -0.03 2.07 16 27 C 0.15 3.07 2.97 -68.52 -0.20 2.86 16 28 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 30 H 0.04 1.14 7.45 -51.93 -0.39 0.76 16 31 H 0.04 1.08 7.20 -51.93 -0.37 0.70 16 32 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 33 H 0.06 0.95 7.98 -51.93 -0.41 0.53 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.08 1.52 6.85 -51.93 -0.36 1.16 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.08 0.88 6.02 -51.93 -0.31 0.57 16 38 H 0.08 0.95 7.91 -51.93 -0.41 0.54 16 39 H 0.09 1.29 7.79 -51.93 -0.40 0.89 16 40 H 0.08 1.37 8.10 -51.93 -0.42 0.95 16 41 H 0.08 1.06 8.10 -51.93 -0.42 0.63 16 42 H 0.15 1.71 8.06 -52.49 -0.42 1.29 16 43 H 0.20 1.28 8.06 -52.49 -0.42 0.85 16 44 H 0.20 1.50 8.06 -52.48 -0.42 1.08 16 45 H 0.09 2.09 5.49 -51.93 -0.28 1.81 16 46 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 361.21 15.07 5.44 5.44 Total: -1.00 -33.95 361.21 -8.72 -42.67 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -7.06 Total: 1.78 kcal Atomic # 6 Polarization: 0.20 SS G_CDS: -1.75 Total: -1.55 kcal Atomic # 7 Polarization: -52.36 SS G_CDS: -0.47 Total: -52.82 kcal Atomic # 8 Polarization: -14.05 SS G_CDS: 0.15 Total: -13.91 kcal Atomic # 14 Polarization: 23.41 SS G_CDS: -5.02 Total: 18.39 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.95 -8.72 -42.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042002323.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.297 kcal (2) G-P(sol) polarization free energy of solvation -33.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds