Wall clock time and date at job start Tue Mar 31 2020 12:25:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 119.99964 * 2 1 4 4 H 1.48503 * 109.47625 * 274.99126 * 3 2 1 5 5 H 1.48505 * 109.47069 * 34.98732 * 3 2 1 6 6 H 1.48504 * 109.47303 * 154.98811 * 3 2 1 7 7 C 1.38813 * 120.00394 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00505 * 186.70844 * 7 2 1 9 9 N 1.36944 * 119.99498 * 6.69993 * 7 2 1 10 10 C 1.47433 * 126.06259 * 354.18304 * 9 7 2 11 11 C 1.54498 * 107.14721 * 181.64426 * 10 9 7 12 12 C 1.56028 * 102.61546 * 22.84668 * 11 10 9 13 13 H 1.09000 * 112.86390 * 202.21496 * 12 11 10 14 14 C 1.53096 * 106.38973 * 78.38319 * 12 11 10 15 15 C 1.52832 * 110.58739 * 195.44953 * 14 12 11 16 16 N 1.47155 * 107.97785 * 57.34027 * 15 14 12 17 17 C 1.34776 * 121.21551 * 122.70422 * 16 15 14 18 18 O 1.21284 * 119.99559 * 180.02562 * 17 16 15 19 19 C 1.50701 * 120.00391 * 0.02562 * 17 16 15 20 20 C 1.53001 * 109.47306 * 180.02562 * 19 17 16 21 21 C 1.50701 * 109.47306 * 179.97438 * 20 19 17 22 22 C 1.41379 * 126.58001 * 269.98356 * 21 20 19 23 23 C 1.34512 * 106.83930 * 180.02562 * 22 21 20 24 24 O 1.34302 * 108.42416 * 0.02562 * 23 22 21 25 25 C 1.34305 * 109.47513 * 359.97438 * 24 23 22 26 26 C 1.46756 * 117.55965 * 302.97476 * 16 15 14 27 27 C 1.46467 * 126.05431 * 174.21325 * 9 7 2 28 28 H 1.08994 * 108.43076 * 269.88246 * 27 9 7 29 29 H 0.96994 * 120.00135 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.90136 * 62.25899 * 10 9 7 31 31 H 1.09002 * 110.04418 * 301.10616 * 10 9 7 32 32 H 1.09003 * 110.78212 * 264.56826 * 11 10 9 33 33 H 1.08996 * 110.94378 * 141.20491 * 11 10 9 34 34 H 1.09001 * 109.25056 * 75.16350 * 14 12 11 35 35 H 1.09000 * 109.22238 * 315.71899 * 14 12 11 36 36 H 1.09001 * 109.75811 * 297.72748 * 15 14 12 37 37 H 1.08992 * 109.80418 * 176.99140 * 15 14 12 38 38 H 1.08999 * 109.46888 * 59.99884 * 19 17 16 39 39 H 1.09000 * 109.46994 * 300.00127 * 19 17 16 40 40 H 1.08999 * 109.47285 * 60.00074 * 20 19 17 41 41 H 1.09000 * 109.47154 * 299.99976 * 20 19 17 42 42 H 1.08002 * 126.57845 * 0.05680 * 22 21 20 43 43 H 1.07999 * 125.78743 * 179.97438 * 23 22 21 44 44 H 1.08003 * 125.79140 * 179.97438 * 25 24 23 45 45 H 1.09003 * 109.22834 * 172.58879 * 26 16 15 46 46 H 1.08996 * 109.23080 * 291.95026 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3923 2.1074 -1.3947 5 1 1.5043 2.6199 0.8028 6 1 3.5965 1.4121 0.5920 7 6 2.0104 -1.2021 -0.0005 8 1 3.0848 -1.2054 0.1087 9 7 1.3326 -2.3839 -0.1394 10 6 -0.1324 -2.5451 -0.1764 11 6 -0.4212 -4.0575 -0.3039 12 6 0.8838 -4.7022 0.2582 13 1 1.0363 -5.7233 -0.0915 14 6 0.7869 -4.6139 1.7835 15 6 2.1526 -4.8601 2.4239 16 7 3.0955 -3.8715 1.8771 17 6 3.7726 -3.0311 2.6844 18 8 4.5441 -2.2245 2.2100 19 6 3.5712 -3.0937 4.1766 20 6 4.4507 -2.0413 4.8546 21 6 4.2488 -2.1035 6.3467 22 6 3.2940 -1.3811 7.0986 23 6 3.4617 -1.7359 8.3852 24 8 4.4622 -2.6294 8.4522 25 6 4.9432 -2.8563 7.2189 26 6 3.2669 -3.8301 0.4202 27 6 1.9348 -3.7120 -0.2770 28 1 2.0886 -3.9125 -1.3373 29 1 -0.4850 0.8400 0.0004 30 1 -0.5424 -2.0152 -1.0361 31 1 -0.5740 -2.1592 0.7424 32 1 -0.5717 -4.3359 -1.3470 33 1 -1.2836 -4.3417 0.2989 34 1 0.0811 -5.3629 2.1427 35 1 0.4320 -3.6221 2.0637 36 1 2.4951 -5.8671 2.1856 37 1 2.0802 -4.7418 3.5050 38 1 3.8449 -4.0847 4.5389 39 1 2.5248 -2.8976 4.4105 40 1 4.1766 -1.0505 4.4923 41 1 5.4972 -2.2370 4.6208 42 1 2.5688 -0.6794 6.7137 43 1 2.8895 -1.3645 9.2225 44 1 5.7509 -3.5285 6.9698 45 1 3.8860 -2.9728 0.1558 46 1 3.7611 -4.7440 0.0907 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042002323.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:21 Heat of formation + Delta-G solvation = -14.945405 kcal Electronic energy + Delta-G solvation = -27898.731721 eV Core-core repulsion = 24175.738008 eV Total energy + Delta-G solvation = -3722.993712 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.42387 -41.37194 -39.65373 -36.51374 -35.81202 -34.65171 -32.98777 -32.36611 -30.90342 -30.05758 -29.81543 -26.54167 -26.32580 -24.53737 -23.84167 -22.45153 -21.75028 -21.29922 -20.74400 -19.58993 -18.56667 -18.42148 -17.69384 -17.05120 -16.83102 -16.64165 -16.40703 -16.06227 -15.65688 -15.50527 -15.13817 -14.98823 -14.39645 -14.18400 -14.06299 -13.72008 -13.67848 -13.48347 -13.23734 -13.10670 -13.06248 -12.95836 -12.86710 -12.63741 -12.50333 -12.31255 -12.06007 -11.91248 -11.63390 -11.38540 -11.26957 -11.13458 -10.72132 -10.66993 -10.50043 -9.44651 -9.41107 -8.80195 -7.86154 -5.14907 0.89894 1.34885 1.35605 1.47042 1.64096 1.78852 2.24974 2.34817 2.46761 3.32744 3.50435 3.68319 3.87470 3.90878 3.94744 4.02274 4.11994 4.18670 4.24261 4.34132 4.38734 4.50009 4.51602 4.62649 4.63909 4.70611 4.75108 4.81457 4.86473 4.90358 4.94224 5.04199 5.10968 5.15899 5.18096 5.23385 5.34055 5.36069 5.55221 5.58243 5.66464 5.72784 5.75974 5.81106 6.22660 6.23019 6.63646 7.14500 7.37301 7.82998 8.46447 9.25152 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.011753 B = 0.004527 C = 0.003776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2381.718650 B = 6184.146518 C = 7412.836344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.064 4.064 3 Si 0.952 3.048 4 H -0.285 1.285 5 H -0.293 1.293 6 H -0.285 1.285 7 C -0.203 4.203 8 H 0.067 0.933 9 N -0.606 5.606 10 C 0.186 3.814 11 C -0.130 4.130 12 C -0.084 4.084 13 H 0.124 0.876 14 C -0.121 4.121 15 C 0.108 3.892 16 N -0.599 5.599 17 C 0.506 3.494 18 O -0.593 6.593 19 C -0.115 4.115 20 C -0.028 4.028 21 C -0.194 4.194 22 C -0.237 4.237 23 C -0.034 4.034 24 O -0.185 6.185 25 C -0.034 4.034 26 C 0.116 3.884 27 C 0.142 3.858 28 H 0.024 0.976 29 H 0.242 0.758 30 H -0.001 1.001 31 H 0.003 0.997 32 H 0.066 0.934 33 H 0.082 0.918 34 H 0.102 0.898 35 H 0.031 0.969 36 H 0.104 0.896 37 H 0.099 0.901 38 H 0.126 0.874 39 H 0.090 0.910 40 H 0.043 0.957 41 H 0.076 0.924 42 H 0.141 0.859 43 H 0.236 0.764 44 H 0.232 0.768 45 H 0.049 0.951 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.218 -15.856 13.952 21.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.256 4.256 3 Si 0.783 3.217 4 H -0.212 1.212 5 H -0.219 1.219 6 H -0.211 1.211 7 C -0.333 4.333 8 H 0.085 0.915 9 N -0.331 5.331 10 C 0.061 3.939 11 C -0.168 4.168 12 C -0.103 4.103 13 H 0.141 0.859 14 C -0.159 4.159 15 C -0.013 4.013 16 N -0.331 5.331 17 C 0.295 3.705 18 O -0.474 6.474 19 C -0.154 4.154 20 C -0.067 4.067 21 C -0.195 4.195 22 C -0.257 4.257 23 C -0.100 4.100 24 O -0.080 6.080 25 C -0.101 4.101 26 C -0.008 4.008 27 C 0.035 3.965 28 H 0.042 0.958 29 H 0.052 0.948 30 H 0.017 0.983 31 H 0.022 0.978 32 H 0.085 0.915 33 H 0.101 0.899 34 H 0.120 0.880 35 H 0.050 0.950 36 H 0.122 0.878 37 H 0.118 0.882 38 H 0.144 0.856 39 H 0.108 0.892 40 H 0.062 0.938 41 H 0.095 0.905 42 H 0.159 0.841 43 H 0.252 0.748 44 H 0.248 0.752 45 H 0.068 0.932 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 4.688 -15.353 13.974 21.283 hybrid contribution -0.048 2.223 -0.807 2.366 sum 4.640 -13.130 13.167 19.165 Atomic orbital electron populations 1.70153 1.05610 1.24540 1.59577 1.25321 0.96325 0.99933 1.04041 0.85417 0.77684 0.81263 0.77346 1.21234 1.21948 1.21112 1.19123 0.90813 0.83823 1.39565 0.91491 1.44496 1.02145 1.01387 1.85042 1.20961 0.83689 0.92416 0.96845 1.23030 0.98183 0.94651 1.00976 1.22420 0.93710 0.98464 0.95704 0.85861 1.21818 0.97705 1.01694 0.94698 1.21989 0.87816 0.92225 0.99289 1.48032 1.42736 1.36021 1.06264 1.21228 0.79593 0.79123 0.90507 1.90655 1.39837 1.38749 1.78112 1.21571 1.02235 1.02614 0.88993 1.19525 1.00112 0.98216 0.88797 1.20478 1.00528 1.02332 0.96188 1.22003 1.03598 1.05608 0.94445 1.24579 0.92281 0.93790 0.99395 1.84079 1.41862 1.50488 1.31610 1.24355 1.02067 1.03390 0.80311 1.21141 0.97520 1.01682 0.80475 1.20920 0.93011 0.86136 0.96454 0.95847 0.94821 0.98288 0.97844 0.91522 0.89946 0.87972 0.94973 0.87795 0.88239 0.85620 0.89151 0.93815 0.90512 0.84121 0.74833 0.75222 0.93249 0.89050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.59 10.43 21.65 0.23 -59.36 16 2 C -0.06 -3.88 5.48 84.86 0.47 -3.41 16 3 Si 0.95 50.73 29.56 68.60 2.03 52.76 16 4 H -0.29 -14.78 7.11 99.48 0.71 -14.08 16 5 H -0.29 -15.41 7.11 99.48 0.71 -14.71 16 6 H -0.29 -15.41 7.11 99.48 0.71 -14.70 16 7 C -0.20 -12.02 9.70 84.03 0.82 -11.21 16 8 H 0.07 4.14 6.45 -2.91 -0.02 4.12 16 9 N -0.61 -30.96 3.19 -674.92 -2.16 -33.12 16 10 C 0.19 9.14 4.61 86.71 0.40 9.54 16 11 C -0.13 -4.40 6.32 32.15 0.20 -4.20 16 12 C -0.08 -2.40 3.68 -9.37 -0.03 -2.44 16 13 H 0.12 2.53 8.14 -2.39 -0.02 2.51 16 14 C -0.12 -3.18 5.04 30.57 0.15 -3.03 16 15 C 0.11 2.41 6.36 86.20 0.55 2.96 16 16 N -0.60 -19.61 2.97 -823.95 -2.45 -22.06 16 17 C 0.51 18.58 7.72 87.66 0.68 19.26 16 18 O -0.59 -27.88 15.44 -3.04 -0.05 -27.93 16 19 C -0.11 -3.08 4.05 29.85 0.12 -2.96 16 20 C -0.03 -0.82 5.02 29.85 0.15 -0.67 16 21 C -0.19 -4.68 5.42 -19.94 -0.11 -4.79 16 22 C -0.24 -5.59 10.87 22.19 0.24 -5.35 16 23 C -0.03 -0.61 12.09 66.97 0.81 0.20 16 24 O -0.18 -3.62 10.65 -2.49 -0.03 -3.65 16 25 C -0.03 -0.65 12.01 66.97 0.80 0.16 16 26 C 0.12 4.21 5.64 85.62 0.48 4.69 16 27 C 0.14 5.49 2.97 44.63 0.13 5.62 16 28 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.24 14.94 8.31 -92.71 -0.77 14.17 16 30 H 0.00 -0.07 7.45 -2.39 -0.02 -0.08 16 31 H 0.00 0.19 7.20 -2.39 -0.02 0.17 16 32 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.08 2.42 7.98 -2.39 -0.02 2.40 16 34 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.03 1.17 6.85 -2.39 -0.02 1.15 16 36 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.10 1.81 6.02 -2.39 -0.01 1.80 16 38 H 0.13 2.35 7.91 -2.39 -0.02 2.33 16 39 H 0.09 2.48 7.79 -2.39 -0.02 2.46 16 40 H 0.04 1.56 8.10 -2.39 -0.02 1.54 16 41 H 0.08 2.15 8.10 -2.39 -0.02 2.13 16 42 H 0.14 3.40 8.06 -2.91 -0.02 3.38 16 43 H 0.24 2.27 8.06 -2.91 -0.02 2.25 16 44 H 0.23 2.64 8.06 -2.91 -0.02 2.61 16 45 H 0.05 2.26 5.49 -2.39 -0.01 2.25 16 46 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 Total: -1.00 -82.61 361.21 4.40 -78.21 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: 0.97 Total: 10.75 kcal Atomic # 6 Polarization: -1.47 SS G_CDS: 5.86 Total: 4.39 kcal Atomic # 7 Polarization: -110.16 SS G_CDS: -4.38 Total: -114.54 kcal Atomic # 8 Polarization: -31.50 SS G_CDS: -0.07 Total: -31.57 kcal Atomic # 14 Polarization: 50.73 SS G_CDS: 2.03 Total: 52.76 kcal Total: -82.61 4.40 -78.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042002323.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.264 kcal (2) G-P(sol) polarization free energy of solvation -82.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds