Wall clock time and date at job start Tue Mar 31 2020 12:25:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86795 * 120.00435 * 2 1 4 4 H 1.48500 * 109.47230 * 274.80730 * 3 2 1 5 5 H 1.48499 * 109.46856 * 34.80774 * 3 2 1 6 6 H 1.48501 * 109.47379 * 154.80872 * 3 2 1 7 7 C 1.38818 * 119.99760 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99992 * 188.10756 * 7 2 1 9 9 N 1.36935 * 119.99736 * 8.09924 * 7 2 1 10 10 C 1.48161 * 126.40314 * 7.65393 * 9 7 2 11 11 C 1.55294 * 107.04782 * 174.97244 * 10 9 7 12 12 C 1.53311 * 101.30508 * 336.97408 * 11 10 9 13 13 H 1.09007 * 111.61577 * 282.11492 * 12 11 10 14 14 C 1.51977 * 114.31861 * 154.30403 * 12 11 10 15 15 C 1.54309 * 107.20926 * 184.55360 * 14 12 11 16 16 N 1.46594 * 110.48497 * 52.07583 * 15 14 12 17 17 C 1.34779 * 119.75699 * 132.17010 * 16 15 14 18 18 O 1.21281 * 119.99647 * 179.72698 * 17 16 15 19 19 C 1.50696 * 119.99731 * 359.73047 * 17 16 15 20 20 C 1.52997 * 109.46821 * 180.02562 * 19 17 16 21 21 C 1.50706 * 109.47195 * 180.02562 * 20 19 17 22 22 C 1.41384 * 126.57515 * 270.02375 * 21 20 19 23 23 C 1.34510 * 106.83803 * 179.97438 * 22 21 20 24 24 O 1.34307 * 108.42122 * 359.97438 * 23 22 21 25 25 C 1.34301 * 109.47918 * 0.02562 * 24 23 22 26 26 C 1.47803 * 120.48582 * 311.89558 * 16 15 14 27 27 C 1.45504 * 126.39709 * 187.62270 * 9 7 2 28 28 H 1.09005 * 109.56880 * 94.18215 * 27 9 7 29 29 H 0.97002 * 119.99789 * 359.97438 * 1 2 3 30 30 H 1.08994 * 109.91474 * 294.32336 * 10 9 7 31 31 H 1.09005 * 109.91820 * 55.42385 * 10 9 7 32 32 H 1.08998 * 110.96111 * 95.68320 * 11 10 9 33 33 H 1.09003 * 110.96011 * 219.39119 * 11 10 9 34 34 H 1.09001 * 109.88783 * 304.14093 * 14 12 11 35 35 H 1.08999 * 109.89736 * 65.17379 * 14 12 11 36 36 H 1.08998 * 109.41226 * 291.78348 * 15 14 12 37 37 H 1.08999 * 109.27461 * 172.27698 * 15 14 12 38 38 H 1.08997 * 109.47705 * 59.99823 * 19 17 16 39 39 H 1.08998 * 109.46997 * 299.99311 * 19 17 16 40 40 H 1.08998 * 109.47821 * 59.99760 * 20 19 17 41 41 H 1.09004 * 109.47170 * 299.99530 * 20 19 17 42 42 H 1.07995 * 126.58338 * 359.96257 * 22 21 20 43 43 H 1.08003 * 125.78937 * 179.97438 * 23 22 21 44 44 H 1.07994 * 125.79271 * 179.74080 * 25 24 23 45 45 H 1.09002 * 110.06438 * 170.74737 * 26 16 15 46 46 H 1.09001 * 110.06437 * 292.20888 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.3962 2.1050 -1.3951 5 1 1.5023 2.6211 0.7992 6 1 3.5950 1.4128 0.5959 7 6 2.0102 -1.2022 -0.0005 8 1 3.0821 -1.2070 0.1314 9 7 1.3357 -2.3821 -0.1681 10 6 -0.0964 -2.5344 -0.5160 11 6 -0.3569 -4.0519 -0.7182 12 6 1.0532 -4.5582 -1.0432 13 1 1.3322 -4.3360 -2.0732 14 6 1.2865 -6.0213 -0.7044 15 6 2.7734 -6.3235 -0.9852 16 7 3.6322 -5.3493 -0.3053 17 6 4.6881 -5.7765 0.4153 18 8 5.4044 -4.9740 0.9755 19 6 4.9785 -7.2511 0.5248 20 6 6.2208 -7.4631 1.3923 21 6 6.5117 -8.9378 1.5013 22 6 6.0178 -9.8234 2.4866 23 6 6.5244 -11.0379 2.2081 24 8 7.2941 -10.9356 1.1122 25 6 7.2903 -9.6642 0.6794 26 6 3.3523 -3.9017 -0.4091 27 6 1.8917 -3.7204 -0.0385 28 1 1.7233 -4.0893 0.9733 29 1 -0.4850 0.8401 0.0004 30 1 -0.7179 -2.1558 0.2955 31 1 -0.3150 -1.9913 -1.4355 32 1 -0.7479 -4.5052 0.1927 33 1 -1.0312 -4.2234 -1.5573 34 1 1.0612 -6.1988 0.3472 35 1 0.6555 -6.6522 -1.3303 36 1 2.9563 -6.2757 -2.0587 37 1 3.0113 -7.3245 -0.6253 38 1 5.1549 -7.6616 -0.4695 39 1 4.1270 -7.7563 0.9806 40 1 6.0441 -7.0529 2.3866 41 1 7.0726 -6.9579 0.9369 42 1 5.3601 -9.5728 3.3058 43 1 6.3429 -11.9421 2.7703 44 1 7.8250 -9.2880 -0.1801 45 1 3.9855 -3.3478 0.2839 46 1 3.5263 -3.5595 -1.4293 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042002325.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:28 Heat of formation + Delta-G solvation = 5.188858 kcal Electronic energy + Delta-G solvation = -26837.878566 eV Core-core repulsion = 23115.757941 eV Total energy + Delta-G solvation = -3722.120625 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.77339 -40.18321 -38.33474 -35.38880 -34.99662 -32.89012 -31.80869 -31.16550 -29.85630 -28.96593 -28.38804 -25.18572 -24.63165 -23.15798 -22.22057 -21.82522 -20.48652 -20.08390 -19.66122 -18.74967 -17.77721 -16.88245 -16.39499 -16.17824 -15.66945 -15.53039 -14.89917 -14.82467 -14.41226 -14.22565 -13.82350 -13.61322 -13.29834 -13.03552 -12.99531 -12.76641 -12.52755 -12.30180 -12.23010 -12.08083 -11.85693 -11.48900 -11.30937 -11.07141 -10.89312 -10.81182 -10.76137 -10.12934 -10.02017 -9.95671 -9.83701 -9.67881 -9.54462 -9.41483 -8.77088 -8.62135 -8.38864 -6.82535 -5.71401 -3.05695 1.52545 2.34230 2.80910 2.90884 3.19350 3.42399 3.48447 3.50490 4.44990 4.52283 4.56744 4.73498 4.85834 4.91692 4.99814 5.02302 5.07489 5.17595 5.35648 5.42696 5.48471 5.55186 5.55916 5.61569 5.69654 5.77829 5.84000 5.92134 5.98525 6.02915 6.05057 6.08568 6.13926 6.17341 6.29670 6.39243 6.49612 6.55833 6.72679 6.76446 6.87813 7.07038 7.47742 7.61749 7.65992 7.80759 8.24087 8.37594 9.19113 9.83077 10.50325 11.40956 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.021337 B = 0.002789 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.974545 B =10036.806308 C =10966.478959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.006 4.006 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.229 4.229 8 H 0.079 0.921 9 N -0.591 5.591 10 C 0.174 3.826 11 C -0.137 4.137 12 C -0.112 4.112 13 H 0.078 0.922 14 C -0.120 4.120 15 C 0.108 3.892 16 N -0.607 5.607 17 C 0.508 3.492 18 O -0.543 6.543 19 C -0.132 4.132 20 C -0.036 4.036 21 C -0.175 4.175 22 C -0.208 4.208 23 C -0.045 4.045 24 O -0.180 6.180 25 C -0.042 4.042 26 C 0.116 3.884 27 C 0.156 3.844 28 H 0.024 0.976 29 H 0.252 0.748 30 H 0.053 0.947 31 H 0.037 0.963 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.067 0.933 35 H 0.072 0.928 36 H 0.064 0.936 37 H 0.079 0.921 38 H 0.090 0.910 39 H 0.093 0.907 40 H 0.081 0.919 41 H 0.079 0.921 42 H 0.148 0.852 43 H 0.201 0.799 44 H 0.201 0.799 45 H 0.092 0.908 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.698 -22.689 -0.879 23.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.203 4.203 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.205 1.205 7 C -0.357 4.357 8 H 0.097 0.903 9 N -0.316 5.316 10 C 0.050 3.950 11 C -0.176 4.176 12 C -0.132 4.132 13 H 0.096 0.904 14 C -0.159 4.159 15 C -0.015 4.015 16 N -0.341 5.341 17 C 0.296 3.704 18 O -0.421 6.421 19 C -0.172 4.172 20 C -0.074 4.074 21 C -0.176 4.176 22 C -0.227 4.227 23 C -0.113 4.113 24 O -0.075 6.075 25 C -0.110 4.110 26 C -0.006 4.006 27 C 0.047 3.953 28 H 0.041 0.959 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.055 0.945 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.086 0.914 35 H 0.091 0.909 36 H 0.083 0.917 37 H 0.097 0.903 38 H 0.109 0.891 39 H 0.111 0.889 40 H 0.099 0.901 41 H 0.097 0.903 42 H 0.166 0.834 43 H 0.217 0.783 44 H 0.218 0.782 45 H 0.110 0.890 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 8.173 -22.225 -0.695 23.690 hybrid contribution 0.092 1.027 0.054 1.032 sum 8.265 -21.198 -0.641 22.761 Atomic orbital electron populations 1.69958 1.04953 1.25087 1.56607 1.24798 0.95618 0.97731 1.02115 0.86140 0.78859 0.83614 0.77477 1.21657 1.21777 1.20455 1.19048 0.91006 0.82591 1.43089 0.90319 1.44173 1.06480 0.99236 1.81751 1.21535 0.85068 0.88725 0.99688 1.22635 0.95303 0.99600 1.00026 1.22218 0.97499 0.93435 1.00042 0.90403 1.21893 0.94566 0.97419 1.02015 1.21816 0.90953 0.91716 0.97051 1.48313 1.27657 1.07879 1.50269 1.20661 0.80473 0.90980 0.78265 1.90702 1.48424 1.56688 1.46237 1.21672 0.99938 0.93478 1.02087 1.19718 0.97254 0.89135 1.01291 1.20545 1.02141 0.97352 0.97602 1.21815 1.05462 0.92950 1.02484 1.24015 0.97050 1.00294 0.89923 1.84064 1.56069 1.29832 1.37581 1.23910 1.04188 0.81062 1.01835 1.21690 0.98316 0.78421 1.02186 1.20987 0.91123 0.87665 0.95532 0.95851 0.93787 0.92841 0.94516 0.92296 0.92324 0.91384 0.90942 0.91732 0.90291 0.89138 0.88913 0.90069 0.90287 0.83439 0.78264 0.78215 0.89010 0.91342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.12 10.65 55.49 0.59 -26.53 16 2 C -0.01 -0.17 5.45 -17.43 -0.09 -0.27 16 3 Si 0.91 22.45 29.56 -169.99 -5.03 17.42 16 4 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.23 -6.39 9.88 -15.06 -0.15 -6.54 16 8 H 0.08 2.16 7.40 -52.49 -0.39 1.77 16 9 N -0.59 -14.95 3.34 -162.90 -0.54 -15.49 16 10 C 0.17 4.16 5.45 -1.91 -0.01 4.15 16 11 C -0.14 -2.47 6.51 -25.35 -0.17 -2.63 16 12 C -0.11 -1.87 2.59 -89.72 -0.23 -2.10 16 13 H 0.08 1.33 8.13 -51.93 -0.42 0.91 16 14 C -0.12 -1.49 5.71 -26.57 -0.15 -1.65 16 15 C 0.11 1.22 6.25 -3.31 -0.02 1.20 16 16 N -0.61 -9.17 3.00 -172.47 -0.52 -9.69 16 17 C 0.51 7.67 7.67 -10.99 -0.08 7.59 16 18 O -0.54 -10.44 15.35 5.56 0.09 -10.35 16 19 C -0.13 -1.37 4.01 -27.89 -0.11 -1.48 16 20 C -0.04 -0.38 5.02 -27.88 -0.14 -0.52 16 21 C -0.18 -1.68 5.42 -104.74 -0.57 -2.24 16 22 C -0.21 -1.84 10.87 -39.70 -0.43 -2.27 16 23 C -0.05 -0.35 12.09 29.41 0.36 0.01 16 24 O -0.18 -1.64 10.65 5.70 0.06 -1.58 16 25 C -0.04 -0.36 12.01 29.42 0.35 -0.01 16 26 C 0.12 2.21 5.63 -3.95 -0.02 2.18 16 27 C 0.16 3.20 2.78 -67.82 -0.19 3.02 16 28 H 0.02 0.53 7.94 -51.93 -0.41 0.12 16 29 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 30 H 0.05 1.43 7.25 -51.93 -0.38 1.05 16 31 H 0.04 0.95 7.85 -51.93 -0.41 0.55 16 32 H 0.06 1.01 8.13 -51.93 -0.42 0.58 16 33 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 34 H 0.07 0.88 7.99 -51.93 -0.41 0.46 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.08 0.68 5.84 -51.93 -0.30 0.37 16 38 H 0.09 0.77 7.98 -51.93 -0.41 0.35 16 39 H 0.09 0.86 7.56 -51.93 -0.39 0.47 16 40 H 0.08 0.97 8.10 -51.93 -0.42 0.55 16 41 H 0.08 0.87 8.10 -51.93 -0.42 0.45 16 42 H 0.15 1.13 8.06 -52.49 -0.42 0.70 16 43 H 0.20 0.80 8.06 -52.48 -0.42 0.38 16 44 H 0.20 1.14 8.06 -52.49 -0.42 0.72 16 45 H 0.09 1.99 6.81 -51.93 -0.35 1.64 16 46 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 LS Contribution 365.36 15.07 5.51 5.51 Total: -1.00 -33.54 365.36 -8.75 -42.29 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -7.24 Total: -0.02 kcal Atomic # 6 Polarization: 0.10 SS G_CDS: -1.66 Total: -1.56 kcal Atomic # 7 Polarization: -51.23 SS G_CDS: -0.47 Total: -51.70 kcal Atomic # 8 Polarization: -12.07 SS G_CDS: 0.15 Total: -11.93 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.03 Total: 17.42 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.54 -8.75 -42.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042002325.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.476 kcal (2) G-P(sol) polarization free energy of solvation -33.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.287 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds