Wall clock time and date at job start Tue Mar 31 2020 12:25:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86795 * 120.00435 * 2 1 4 4 H 1.48500 * 109.47230 * 274.80730 * 3 2 1 5 5 H 1.48499 * 109.46856 * 34.80774 * 3 2 1 6 6 H 1.48501 * 109.47379 * 154.80872 * 3 2 1 7 7 C 1.38818 * 119.99760 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99992 * 188.10756 * 7 2 1 9 9 N 1.36935 * 119.99736 * 8.09924 * 7 2 1 10 10 C 1.48161 * 126.40314 * 7.65393 * 9 7 2 11 11 C 1.55294 * 107.04782 * 174.97244 * 10 9 7 12 12 C 1.53311 * 101.30508 * 336.97408 * 11 10 9 13 13 H 1.09007 * 111.61577 * 282.11492 * 12 11 10 14 14 C 1.51977 * 114.31861 * 154.30403 * 12 11 10 15 15 C 1.54309 * 107.20926 * 184.55360 * 14 12 11 16 16 N 1.46594 * 110.48497 * 52.07583 * 15 14 12 17 17 C 1.34779 * 119.75699 * 132.17010 * 16 15 14 18 18 O 1.21281 * 119.99647 * 179.72698 * 17 16 15 19 19 C 1.50696 * 119.99731 * 359.73047 * 17 16 15 20 20 C 1.52997 * 109.46821 * 180.02562 * 19 17 16 21 21 C 1.50706 * 109.47195 * 180.02562 * 20 19 17 22 22 C 1.41384 * 126.57515 * 270.02375 * 21 20 19 23 23 C 1.34510 * 106.83803 * 179.97438 * 22 21 20 24 24 O 1.34307 * 108.42122 * 359.97438 * 23 22 21 25 25 C 1.34301 * 109.47918 * 0.02562 * 24 23 22 26 26 C 1.47803 * 120.48582 * 311.89558 * 16 15 14 27 27 C 1.45504 * 126.39709 * 187.62270 * 9 7 2 28 28 H 1.09005 * 109.56880 * 94.18215 * 27 9 7 29 29 H 0.97002 * 119.99789 * 359.97438 * 1 2 3 30 30 H 1.08994 * 109.91474 * 294.32336 * 10 9 7 31 31 H 1.09005 * 109.91820 * 55.42385 * 10 9 7 32 32 H 1.08998 * 110.96111 * 95.68320 * 11 10 9 33 33 H 1.09003 * 110.96011 * 219.39119 * 11 10 9 34 34 H 1.09001 * 109.88783 * 304.14093 * 14 12 11 35 35 H 1.08999 * 109.89736 * 65.17379 * 14 12 11 36 36 H 1.08998 * 109.41226 * 291.78348 * 15 14 12 37 37 H 1.08999 * 109.27461 * 172.27698 * 15 14 12 38 38 H 1.08997 * 109.47705 * 59.99823 * 19 17 16 39 39 H 1.08998 * 109.46997 * 299.99311 * 19 17 16 40 40 H 1.08998 * 109.47821 * 59.99760 * 20 19 17 41 41 H 1.09004 * 109.47170 * 299.99530 * 20 19 17 42 42 H 1.07995 * 126.58338 * 359.96257 * 22 21 20 43 43 H 1.08003 * 125.78937 * 179.97438 * 23 22 21 44 44 H 1.07994 * 125.79271 * 179.74080 * 25 24 23 45 45 H 1.09002 * 110.06438 * 170.74737 * 26 16 15 46 46 H 1.09001 * 110.06437 * 292.20888 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.3962 2.1050 -1.3951 5 1 1.5023 2.6211 0.7992 6 1 3.5950 1.4128 0.5959 7 6 2.0102 -1.2022 -0.0005 8 1 3.0821 -1.2070 0.1314 9 7 1.3357 -2.3821 -0.1681 10 6 -0.0964 -2.5344 -0.5160 11 6 -0.3569 -4.0519 -0.7182 12 6 1.0532 -4.5582 -1.0432 13 1 1.3322 -4.3360 -2.0732 14 6 1.2865 -6.0213 -0.7044 15 6 2.7734 -6.3235 -0.9852 16 7 3.6322 -5.3493 -0.3053 17 6 4.6881 -5.7765 0.4153 18 8 5.4044 -4.9740 0.9755 19 6 4.9785 -7.2511 0.5248 20 6 6.2208 -7.4631 1.3923 21 6 6.5117 -8.9378 1.5013 22 6 6.0178 -9.8234 2.4866 23 6 6.5244 -11.0379 2.2081 24 8 7.2941 -10.9356 1.1122 25 6 7.2903 -9.6642 0.6794 26 6 3.3523 -3.9017 -0.4091 27 6 1.8917 -3.7204 -0.0385 28 1 1.7233 -4.0893 0.9733 29 1 -0.4850 0.8401 0.0004 30 1 -0.7179 -2.1558 0.2955 31 1 -0.3150 -1.9913 -1.4355 32 1 -0.7479 -4.5052 0.1927 33 1 -1.0312 -4.2234 -1.5573 34 1 1.0612 -6.1988 0.3472 35 1 0.6555 -6.6522 -1.3303 36 1 2.9563 -6.2757 -2.0587 37 1 3.0113 -7.3245 -0.6253 38 1 5.1549 -7.6616 -0.4695 39 1 4.1270 -7.7563 0.9806 40 1 6.0441 -7.0529 2.3866 41 1 7.0726 -6.9579 0.9369 42 1 5.3601 -9.5728 3.3058 43 1 6.3429 -11.9421 2.7703 44 1 7.8250 -9.2880 -0.1801 45 1 3.9855 -3.3478 0.2839 46 1 3.5263 -3.5595 -1.4293 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042002325.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:27 Heat of formation + Delta-G solvation = -15.659855 kcal Electronic energy + Delta-G solvation = -26838.782634 eV Core-core repulsion = 23115.757941 eV Total energy + Delta-G solvation = -3723.024693 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -43.38936 -41.47517 -39.78366 -36.84344 -35.80961 -34.67786 -32.94646 -32.48115 -31.03595 -30.24351 -29.69869 -26.54087 -26.26589 -24.43141 -23.51320 -22.41273 -21.82996 -21.35621 -20.95928 -19.91462 -18.72669 -18.43635 -17.66013 -16.98220 -16.88968 -16.72149 -16.56598 -15.93380 -15.63353 -15.50334 -15.28762 -14.88491 -14.62359 -14.37219 -13.88437 -13.85954 -13.62677 -13.59082 -13.35012 -13.18863 -13.10364 -12.95344 -12.90638 -12.76267 -12.49266 -12.12336 -12.01610 -11.86267 -11.73810 -11.60103 -11.33758 -11.01541 -10.84834 -10.73186 -10.50237 -9.65690 -9.38041 -8.90995 -7.89328 -5.24929 0.93276 1.41856 1.42765 1.52349 1.64097 1.67819 2.01956 2.38131 2.47728 3.28322 3.45553 3.57172 3.82700 3.93593 3.97364 3.99707 4.03903 4.18362 4.24705 4.29121 4.31406 4.36482 4.43928 4.56736 4.61147 4.66006 4.76953 4.83372 4.85542 4.90076 4.93513 4.94890 5.12617 5.14660 5.16834 5.25284 5.26946 5.36588 5.39569 5.52632 5.59666 5.64699 5.68712 5.73853 6.17210 6.27251 6.46750 7.05107 7.19672 7.74321 8.41948 9.21665 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.021337 B = 0.002789 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.974545 B =10036.806308 C =10966.478959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.062 4.062 3 Si 0.971 3.029 4 H -0.284 1.284 5 H -0.292 1.292 6 H -0.273 1.273 7 C -0.238 4.238 8 H 0.074 0.926 9 N -0.613 5.613 10 C 0.176 3.824 11 C -0.121 4.121 12 C -0.095 4.095 13 H 0.078 0.922 14 C -0.112 4.112 15 C 0.102 3.898 16 N -0.607 5.607 17 C 0.501 3.499 18 O -0.595 6.595 19 C -0.116 4.116 20 C -0.030 4.030 21 C -0.192 4.192 22 C -0.229 4.229 23 C -0.040 4.040 24 O -0.190 6.190 25 C -0.041 4.041 26 C 0.128 3.872 27 C 0.147 3.853 28 H 0.005 0.995 29 H 0.248 0.752 30 H 0.013 0.987 31 H 0.006 0.994 32 H 0.070 0.930 33 H 0.087 0.913 34 H 0.065 0.935 35 H 0.113 0.887 36 H 0.085 0.915 37 H 0.119 0.881 38 H 0.123 0.877 39 H 0.114 0.886 40 H 0.058 0.942 41 H 0.069 0.931 42 H 0.153 0.847 43 H 0.233 0.767 44 H 0.224 0.776 45 H 0.052 0.948 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.048 -26.466 -2.138 27.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.256 4.256 3 Si 0.800 3.200 4 H -0.211 1.211 5 H -0.219 1.219 6 H -0.198 1.198 7 C -0.367 4.367 8 H 0.091 0.909 9 N -0.338 5.338 10 C 0.052 3.948 11 C -0.159 4.159 12 C -0.115 4.115 13 H 0.096 0.904 14 C -0.150 4.150 15 C -0.019 4.019 16 N -0.340 5.340 17 C 0.292 3.708 18 O -0.476 6.476 19 C -0.156 4.156 20 C -0.068 4.068 21 C -0.193 4.193 22 C -0.248 4.248 23 C -0.106 4.106 24 O -0.085 6.085 25 C -0.108 4.108 26 C 0.004 3.996 27 C 0.039 3.961 28 H 0.022 0.978 29 H 0.057 0.943 30 H 0.031 0.969 31 H 0.024 0.976 32 H 0.089 0.911 33 H 0.106 0.894 34 H 0.084 0.916 35 H 0.132 0.868 36 H 0.103 0.897 37 H 0.137 0.863 38 H 0.141 0.859 39 H 0.132 0.868 40 H 0.077 0.923 41 H 0.088 0.912 42 H 0.171 0.829 43 H 0.249 0.751 44 H 0.241 0.759 45 H 0.071 0.929 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 8.523 -26.066 -1.969 27.494 hybrid contribution 0.009 2.187 0.507 2.245 sum 8.531 -23.879 -1.463 25.399 Atomic orbital electron populations 1.70157 1.06173 1.25323 1.57923 1.25589 0.96513 1.00841 1.02649 0.85161 0.77753 0.79622 0.77477 1.21058 1.21872 1.19835 1.19309 0.91120 0.84153 1.42159 0.90861 1.44466 1.07400 1.00422 1.81523 1.21377 0.83988 0.92897 0.96566 1.22521 0.96955 0.94620 1.01798 1.22150 0.94968 0.95801 0.98557 0.90361 1.21900 0.96090 0.94276 1.02769 1.22192 0.89388 0.92264 0.98077 1.48407 1.28451 1.06516 1.50585 1.21600 0.79519 0.92775 0.76925 1.90683 1.50206 1.58493 1.48254 1.21677 1.00455 0.89482 1.03957 1.19562 0.97177 0.90010 1.00069 1.20487 1.03490 0.96607 0.98747 1.22022 1.06396 0.93485 1.02921 1.24643 0.95650 1.01106 0.89234 1.84086 1.56336 1.30031 1.38095 1.24347 1.03585 0.80765 1.02149 1.21227 0.96401 0.81315 1.00622 1.21147 0.92959 0.86130 0.95876 0.97803 0.94323 0.96850 0.97614 0.91117 0.89433 0.91628 0.86840 0.89717 0.86262 0.85944 0.86800 0.92289 0.91248 0.82904 0.75073 0.75944 0.92931 0.91742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.44 10.65 21.65 0.23 -58.21 16 2 C -0.06 -3.69 5.45 84.86 0.46 -3.22 16 3 Si 0.97 47.76 29.56 68.60 2.03 49.78 16 4 H -0.28 -13.60 7.11 99.48 0.71 -12.89 16 5 H -0.29 -14.31 7.11 99.48 0.71 -13.60 16 6 H -0.27 -13.02 7.11 99.48 0.71 -12.32 16 7 C -0.24 -13.90 9.88 84.04 0.83 -13.07 16 8 H 0.07 4.24 7.40 -2.91 -0.02 4.21 16 9 N -0.61 -32.28 3.34 -669.30 -2.24 -34.51 16 10 C 0.18 8.74 5.45 86.85 0.47 9.22 16 11 C -0.12 -4.16 6.51 31.49 0.20 -3.96 16 12 C -0.10 -2.96 2.59 -10.21 -0.03 -2.99 16 13 H 0.08 2.47 8.13 -2.38 -0.02 2.46 16 14 C -0.11 -2.27 5.71 30.70 0.18 -2.10 16 15 C 0.10 1.84 6.25 86.81 0.54 2.38 16 16 N -0.61 -17.36 3.00 -817.97 -2.46 -19.82 16 17 C 0.50 14.66 7.67 87.66 0.67 15.33 16 18 O -0.60 -23.65 15.35 -3.03 -0.05 -23.70 16 19 C -0.12 -2.08 4.01 29.85 0.12 -1.96 16 20 C -0.03 -0.61 5.02 29.85 0.15 -0.46 16 21 C -0.19 -3.28 5.42 -19.94 -0.11 -3.39 16 22 C -0.23 -3.56 10.87 22.19 0.24 -3.31 16 23 C -0.04 -0.49 12.09 66.97 0.81 0.32 16 24 O -0.19 -2.93 10.65 -2.51 -0.03 -2.96 16 25 C -0.04 -0.60 12.01 66.97 0.80 0.21 16 26 C 0.13 4.99 5.63 85.73 0.48 5.47 16 27 C 0.15 6.12 2.78 45.60 0.13 6.25 16 28 H 0.00 0.20 7.94 -2.38 -0.02 0.19 16 29 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 30 H 0.01 0.75 7.25 -2.39 -0.02 0.74 16 31 H 0.01 0.30 7.85 -2.38 -0.02 0.28 16 32 H 0.07 2.28 8.13 -2.39 -0.02 2.26 16 33 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 34 H 0.06 1.42 7.99 -2.39 -0.02 1.40 16 35 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.12 1.29 5.84 -2.39 -0.01 1.27 16 38 H 0.12 1.48 7.98 -2.39 -0.02 1.46 16 39 H 0.11 1.63 7.56 -2.39 -0.02 1.61 16 40 H 0.06 1.43 8.10 -2.39 -0.02 1.41 16 41 H 0.07 1.50 8.10 -2.38 -0.02 1.48 16 42 H 0.15 2.08 8.06 -2.91 -0.02 2.06 16 43 H 0.23 1.04 8.06 -2.91 -0.02 1.01 16 44 H 0.22 1.87 8.06 -2.91 -0.02 1.85 16 45 H 0.05 2.43 6.81 -2.39 -0.02 2.41 16 46 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 Total: -1.00 -79.98 365.36 4.41 -75.57 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: 0.96 Total: 9.13 kcal Atomic # 6 Polarization: -1.25 SS G_CDS: 5.96 Total: 4.71 kcal Atomic # 7 Polarization: -108.07 SS G_CDS: -4.46 Total: -112.54 kcal Atomic # 8 Polarization: -26.58 SS G_CDS: -0.07 Total: -26.66 kcal Atomic # 14 Polarization: 47.76 SS G_CDS: 2.03 Total: 49.78 kcal Total: -79.98 4.41 -75.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042002325.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.910 kcal (2) G-P(sol) polarization free energy of solvation -79.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds