Wall clock time and date at job start Tue Mar 31 2020 12:41:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35901 * 116.99640 * 2 1 4 4 C 1.38748 * 120.05895 * 0.02574 * 3 2 1 5 5 C 1.38124 * 119.94348 * 179.97438 * 4 3 2 6 6 C 1.38283 * 120.06017 * 0.02562 * 5 4 3 7 7 C 1.50696 * 119.94685 * 179.97438 * 6 5 4 8 8 C 1.38248 * 120.10879 * 359.74299 * 6 5 4 9 9 C 1.38172 * 120.05192 * 0.51094 * 8 6 5 10 10 C 1.50704 * 120.02378 * 179.76733 * 9 8 6 11 11 C 1.50697 * 109.47231 * 264.72270 * 10 9 8 12 12 O 1.21285 * 119.99698 * 0.02562 * 11 10 9 13 13 N 1.34772 * 120.00164 * 180.02562 * 11 10 9 14 14 C 1.46504 * 119.99967 * 0.02562 * 13 11 10 15 15 C 1.46498 * 120.00081 * 179.97438 * 13 11 10 16 16 C 1.53498 * 114.20710 * 120.00023 * 15 13 11 17 17 N 1.47067 * 87.98492 * 87.52151 * 16 15 13 18 18 C 1.36942 * 136.06015 * 207.08701 * 17 16 15 19 19 H 1.08004 * 119.99347 * 7.75208 * 18 17 16 20 20 C 1.38804 * 120.00122 * 187.74457 * 18 17 16 21 21 N 1.31616 * 119.99944 * 173.06636 * 20 18 17 22 22 Si 1.86802 * 120.00216 * 353.07036 * 20 18 17 23 23 H 1.48493 * 109.47387 * 175.20665 * 22 20 18 24 24 H 1.48496 * 109.47320 * 295.20989 * 22 20 18 25 25 H 1.48507 * 109.46785 * 55.20955 * 22 20 18 26 26 C 1.47068 * 87.88610 * 27.34499 * 17 16 15 27 27 H 1.08999 * 109.46654 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47017 * 299.99712 * 1 2 3 29 29 H 1.09001 * 109.47143 * 59.99825 * 1 2 3 30 30 H 1.08005 * 120.02778 * 359.97438 * 4 3 2 31 31 H 1.08005 * 119.96760 * 180.02562 * 5 4 3 32 32 H 1.09001 * 109.47108 * 89.99976 * 7 6 5 33 33 H 1.09002 * 109.47301 * 209.99611 * 7 6 5 34 34 H 1.08992 * 109.47145 * 329.99850 * 7 6 5 35 35 H 1.08000 * 119.97373 * 180.25452 * 8 6 5 36 36 H 1.09003 * 109.46937 * 144.72278 * 10 9 8 37 37 H 1.09001 * 109.46822 * 24.72462 * 10 9 8 38 38 H 1.08997 * 109.46792 * 269.99735 * 14 13 11 39 39 H 1.08997 * 109.47184 * 29.99889 * 14 13 11 40 40 H 1.09001 * 109.47056 * 150.00356 * 14 13 11 41 41 H 1.08998 * 113.28362 * 346.93941 * 15 13 11 42 42 H 1.09002 * 113.46537 * 332.74332 * 16 15 13 43 43 H 1.08995 * 113.52595 * 202.31149 * 16 15 13 44 44 H 0.97001 * 120.00186 * 1.94734 * 21 20 18 45 45 H 1.08991 * 113.46677 * 87.43420 * 26 17 16 46 46 H 1.08994 * 113.46994 * 217.88229 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9209 3.6048 0.0011 6 6 3.3019 3.6759 0.0005 7 6 3.9860 5.0186 0.0005 8 6 4.0560 2.5172 0.0048 9 6 3.4311 1.2849 -0.0010 10 6 4.2538 0.0222 -0.0016 11 6 4.4237 -0.4660 -1.4172 12 8 3.9261 0.1510 -2.3352 13 7 5.1285 -1.5881 -1.6630 14 6 5.7290 -2.3336 -0.5540 15 6 5.2932 -2.0629 -3.0391 16 6 6.7534 -2.1499 -3.5043 17 7 6.7960 -3.5097 -2.9457 18 6 7.7614 -4.3367 -2.4364 19 1 8.7606 -3.9618 -2.2698 20 6 7.4559 -5.6565 -2.1340 21 7 8.4112 -6.4874 -1.7746 22 14 5.6888 -6.2533 -2.2373 23 1 5.6444 -7.7154 -1.9812 24 1 4.8677 -5.5476 -1.2209 25 1 5.1495 -5.9715 -3.5919 26 6 5.3467 -3.5931 -3.1808 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 0.2127 2.3203 0.0005 31 1 1.3339 4.5114 0.0019 32 1 4.1513 5.3421 1.0282 33 1 4.9437 4.9384 -0.5136 34 1 3.3578 5.7464 -0.5129 35 1 5.1344 2.5753 0.0086 36 1 3.7470 -0.7419 0.5879 37 1 5.2326 0.2262 0.4324 38 1 6.7360 -1.9600 -0.3682 39 1 5.1222 -2.2036 0.3420 40 1 5.7758 -3.3919 -0.8108 41 1 4.6271 -1.5704 -3.7474 42 1 7.4142 -1.4498 -2.9932 43 1 6.8671 -2.1221 -4.5880 44 1 9.3245 -6.1707 -1.6937 45 1 5.0885 -3.9457 -4.1793 46 1 4.8090 -4.1223 -2.3942 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001043252939.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:24 Heat of formation + Delta-G solvation = 25.746623 kcal Electronic energy + Delta-G solvation = -27226.741083 eV Core-core repulsion = 23505.511909 eV Total energy + Delta-G solvation = -3721.229174 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.60417 -39.75609 -38.03403 -37.63328 -34.16320 -33.28622 -32.29373 -31.69319 -28.66223 -28.02099 -27.60245 -26.17222 -25.94276 -25.30151 -22.96863 -22.05044 -21.13334 -19.88205 -18.41353 -18.01664 -17.47506 -16.87014 -16.62128 -16.05884 -15.73154 -15.25221 -15.02683 -14.64658 -14.45524 -14.01336 -13.97210 -13.78062 -13.75808 -13.20516 -13.11922 -12.91918 -12.69098 -12.38081 -12.18831 -12.09277 -11.99598 -11.87180 -11.42299 -11.38878 -11.23940 -10.97584 -10.90867 -10.83593 -10.58907 -10.35352 -9.56652 -9.34733 -9.21324 -8.92735 -8.86415 -8.09510 -8.05947 -7.15798 -6.34996 -3.25432 1.22294 1.34633 2.95223 3.19358 3.29219 3.35510 3.41547 3.60956 3.71440 4.54869 4.55580 4.65955 4.71876 4.75240 4.88016 4.96959 5.00785 5.12265 5.15399 5.21962 5.24492 5.32811 5.39919 5.42153 5.46841 5.51170 5.60577 5.69731 5.77505 5.85854 5.94177 6.00779 6.08862 6.20271 6.24036 6.24638 6.30704 6.39858 6.41684 6.50413 6.66126 6.70782 7.06859 7.09347 7.30572 7.84974 8.21111 8.53227 8.94962 9.47236 10.35103 11.17566 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.020370 B = 0.003363 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.228635 B = 8324.959660 C = 9009.198869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.312 6.312 3 C 0.138 3.862 4 C -0.205 4.205 5 C -0.084 4.084 6 C -0.125 4.125 7 C -0.107 4.107 8 C -0.070 4.070 9 C -0.087 4.087 10 C -0.092 4.092 11 C 0.519 3.481 12 O -0.544 6.544 13 N -0.583 5.583 14 C 0.081 3.919 15 C 0.099 3.901 16 C 0.110 3.890 17 N -0.626 5.626 18 C -0.302 4.302 19 H 0.082 0.918 20 C -0.024 4.024 21 N -0.934 5.934 22 Si 1.067 2.933 23 H -0.295 1.295 24 H -0.293 1.293 25 H -0.287 1.287 26 C 0.087 3.913 27 H 0.099 0.901 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.126 0.874 31 H 0.121 0.879 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.127 0.873 36 H 0.105 0.895 37 H 0.100 0.900 38 H 0.056 0.944 39 H 0.057 0.943 40 H 0.095 0.905 41 H 0.104 0.896 42 H 0.046 0.954 43 H 0.047 0.953 44 H 0.261 0.739 45 H 0.057 0.943 46 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.739 19.398 6.506 25.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.225 6.225 3 C 0.093 3.907 4 C -0.224 4.224 5 C -0.102 4.102 6 C -0.126 4.126 7 C -0.164 4.164 8 C -0.088 4.088 9 C -0.088 4.088 10 C -0.132 4.132 11 C 0.308 3.692 12 O -0.422 6.422 13 N -0.315 5.315 14 C -0.061 4.061 15 C -0.006 4.006 16 C -0.018 4.018 17 N -0.355 5.355 18 C -0.428 4.428 19 H 0.100 0.900 20 C -0.223 4.223 21 N -0.576 5.576 22 Si 0.900 3.100 23 H -0.223 1.223 24 H -0.221 1.221 25 H -0.214 1.214 26 C -0.039 4.039 27 H 0.117 0.883 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.144 0.856 31 H 0.139 0.861 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.145 0.855 36 H 0.123 0.877 37 H 0.118 0.882 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.114 0.886 41 H 0.122 0.878 42 H 0.064 0.936 43 H 0.064 0.936 44 H 0.071 0.929 45 H 0.074 0.926 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -15.667 18.007 6.317 24.690 hybrid contribution 0.866 1.281 -0.304 1.576 sum -14.801 19.289 6.013 25.046 Atomic orbital electron populations 1.23033 0.78585 1.03929 1.01060 1.86092 1.21171 1.26800 1.88435 1.18754 0.91651 0.84256 0.96047 1.21129 0.99766 0.92284 1.09231 1.20745 0.93903 0.96826 0.98707 1.19734 0.93610 0.95355 1.03853 1.20696 1.00366 0.93423 1.01931 1.20728 0.99631 0.90519 0.97903 1.18660 0.90252 0.94637 1.05246 1.20511 1.01088 0.96006 0.95603 1.20395 0.77860 0.80094 0.90891 1.90655 1.48764 1.56397 1.46351 1.47377 1.51891 1.24975 1.07235 1.21889 0.97189 0.99696 0.87364 1.22484 0.98620 0.96128 0.83356 1.22777 0.93790 0.88393 0.96811 1.46120 1.03464 1.14694 1.71181 1.20092 0.91210 0.92309 1.39170 0.90011 1.25675 1.06006 0.91079 0.99539 1.70917 1.01303 1.34755 1.50621 0.83754 0.74678 0.75277 0.76273 1.22253 1.22105 1.21392 1.23181 0.87728 0.93518 0.99494 0.88282 0.92857 0.92721 0.85615 0.86077 0.91567 0.91639 0.91843 0.85522 0.87710 0.88160 0.92541 0.92439 0.88647 0.87775 0.93551 0.93555 0.92883 0.92600 0.92680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.81 101.05 0.99 1.25 16 2 O -0.31 -4.12 9.63 -19.43 -0.19 -4.31 16 3 C 0.14 1.85 6.66 -39.22 -0.26 1.59 16 4 C -0.21 -2.31 9.04 -39.43 -0.36 -2.67 16 5 C -0.08 -0.87 9.69 -39.61 -0.38 -1.26 16 6 C -0.13 -1.36 5.88 -104.60 -0.62 -1.98 16 7 C -0.11 -0.86 10.01 36.00 0.36 -0.50 16 8 C -0.07 -0.85 9.33 -39.60 -0.37 -1.22 16 9 C -0.09 -1.19 4.39 -104.47 -0.46 -1.64 16 10 C -0.09 -1.25 4.11 -29.03 -0.12 -1.37 16 11 C 0.52 8.91 7.67 -10.99 -0.08 8.83 16 12 O -0.54 -10.88 15.54 5.55 0.09 -10.79 16 13 N -0.58 -10.43 3.12 -173.55 -0.54 -10.97 16 14 C 0.08 1.40 9.34 59.85 0.56 1.96 16 15 C 0.10 1.89 4.69 -67.67 -0.32 1.57 16 16 C 0.11 2.22 8.31 -8.50 -0.07 2.15 16 17 N -0.63 -14.86 2.40 -184.60 -0.44 -15.31 16 18 C -0.30 -8.33 10.69 -15.06 -0.16 -8.50 16 19 H 0.08 2.41 8.05 -52.48 -0.42 1.99 16 20 C -0.02 -0.69 5.50 -17.43 -0.10 -0.79 16 21 N -0.93 -28.82 13.71 55.49 0.76 -28.06 16 22 Si 1.07 26.18 24.72 -169.99 -4.20 21.98 16 23 H -0.30 -7.44 7.11 56.52 0.40 -7.04 16 24 H -0.29 -6.66 6.48 56.52 0.37 -6.29 16 25 H -0.29 -6.67 6.16 56.52 0.35 -6.32 16 26 C 0.09 1.84 4.72 -8.36 -0.04 1.80 16 27 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.05 0.37 7.66 -51.93 -0.40 -0.03 16 29 H 0.05 0.45 7.66 -51.93 -0.40 0.05 16 30 H 0.13 1.11 6.30 -52.48 -0.33 0.78 16 31 H 0.12 0.95 8.06 -52.48 -0.42 0.53 16 32 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.51 8.09 -51.93 -0.42 0.09 16 34 H 0.06 0.44 8.08 -51.93 -0.42 0.02 16 35 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 36 H 0.10 1.34 6.95 -51.93 -0.36 0.97 16 37 H 0.10 1.14 8.02 -51.93 -0.42 0.72 16 38 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 39 H 0.06 0.80 6.44 -51.93 -0.33 0.46 16 40 H 0.09 1.97 4.85 -51.93 -0.25 1.72 16 41 H 0.10 1.92 7.29 -51.93 -0.38 1.54 16 42 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.26 7.98 8.73 -40.82 -0.36 7.62 16 45 H 0.06 1.15 7.67 -51.93 -0.40 0.75 16 46 H 0.06 1.20 3.88 -51.93 -0.20 1.00 16 LS Contribution 365.18 15.07 5.50 5.50 Total: -1.00 -34.03 365.18 -7.37 -41.40 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -6.93 Total: 1.34 kcal Atomic # 6 Polarization: 0.64 SS G_CDS: -1.42 Total: -0.78 kcal Atomic # 7 Polarization: -54.11 SS G_CDS: -0.22 Total: -54.33 kcal Atomic # 8 Polarization: -15.00 SS G_CDS: -0.10 Total: -15.10 kcal Atomic # 14 Polarization: 26.18 SS G_CDS: -4.20 Total: 21.98 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.03 -7.37 -41.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001043252939.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.148 kcal (2) G-P(sol) polarization free energy of solvation -34.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.401 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds