Wall clock time and date at job start Tue Mar 31 2020 12:41:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35901 * 116.99640 * 2 1 4 4 C 1.38748 * 120.05895 * 0.02574 * 3 2 1 5 5 C 1.38124 * 119.94348 * 179.97438 * 4 3 2 6 6 C 1.38283 * 120.06017 * 0.02562 * 5 4 3 7 7 C 1.50696 * 119.94685 * 179.97438 * 6 5 4 8 8 C 1.38248 * 120.10879 * 359.74299 * 6 5 4 9 9 C 1.38172 * 120.05192 * 0.51094 * 8 6 5 10 10 C 1.50704 * 120.02378 * 179.76733 * 9 8 6 11 11 C 1.50697 * 109.47231 * 264.72270 * 10 9 8 12 12 O 1.21285 * 119.99698 * 0.02562 * 11 10 9 13 13 N 1.34772 * 120.00164 * 180.02562 * 11 10 9 14 14 C 1.46504 * 119.99967 * 0.02562 * 13 11 10 15 15 C 1.46498 * 120.00081 * 179.97438 * 13 11 10 16 16 C 1.53498 * 114.20710 * 120.00023 * 15 13 11 17 17 N 1.47067 * 87.98492 * 87.52151 * 16 15 13 18 18 C 1.36942 * 136.06015 * 207.08701 * 17 16 15 19 19 H 1.08004 * 119.99347 * 7.75208 * 18 17 16 20 20 C 1.38804 * 120.00122 * 187.74457 * 18 17 16 21 21 N 1.31616 * 119.99944 * 173.06636 * 20 18 17 22 22 Si 1.86802 * 120.00216 * 353.07036 * 20 18 17 23 23 H 1.48493 * 109.47387 * 175.20665 * 22 20 18 24 24 H 1.48496 * 109.47320 * 295.20989 * 22 20 18 25 25 H 1.48507 * 109.46785 * 55.20955 * 22 20 18 26 26 C 1.47068 * 87.88610 * 27.34499 * 17 16 15 27 27 H 1.08999 * 109.46654 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47017 * 299.99712 * 1 2 3 29 29 H 1.09001 * 109.47143 * 59.99825 * 1 2 3 30 30 H 1.08005 * 120.02778 * 359.97438 * 4 3 2 31 31 H 1.08005 * 119.96760 * 180.02562 * 5 4 3 32 32 H 1.09001 * 109.47108 * 89.99976 * 7 6 5 33 33 H 1.09002 * 109.47301 * 209.99611 * 7 6 5 34 34 H 1.08992 * 109.47145 * 329.99850 * 7 6 5 35 35 H 1.08000 * 119.97373 * 180.25452 * 8 6 5 36 36 H 1.09003 * 109.46937 * 144.72278 * 10 9 8 37 37 H 1.09001 * 109.46822 * 24.72462 * 10 9 8 38 38 H 1.08997 * 109.46792 * 269.99735 * 14 13 11 39 39 H 1.08997 * 109.47184 * 29.99889 * 14 13 11 40 40 H 1.09001 * 109.47056 * 150.00356 * 14 13 11 41 41 H 1.08998 * 113.28362 * 346.93941 * 15 13 11 42 42 H 1.09002 * 113.46537 * 332.74332 * 16 15 13 43 43 H 1.08995 * 113.52595 * 202.31149 * 16 15 13 44 44 H 0.97001 * 120.00186 * 1.94734 * 21 20 18 45 45 H 1.08991 * 113.46677 * 87.43420 * 26 17 16 46 46 H 1.08994 * 113.46994 * 217.88229 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9209 3.6048 0.0011 6 6 3.3019 3.6759 0.0005 7 6 3.9860 5.0186 0.0005 8 6 4.0560 2.5172 0.0048 9 6 3.4311 1.2849 -0.0010 10 6 4.2538 0.0222 -0.0016 11 6 4.4237 -0.4660 -1.4172 12 8 3.9261 0.1510 -2.3352 13 7 5.1285 -1.5881 -1.6630 14 6 5.7290 -2.3336 -0.5540 15 6 5.2932 -2.0629 -3.0391 16 6 6.7534 -2.1499 -3.5043 17 7 6.7960 -3.5097 -2.9457 18 6 7.7614 -4.3367 -2.4364 19 1 8.7606 -3.9618 -2.2698 20 6 7.4559 -5.6565 -2.1340 21 7 8.4112 -6.4874 -1.7746 22 14 5.6888 -6.2533 -2.2373 23 1 5.6444 -7.7154 -1.9812 24 1 4.8677 -5.5476 -1.2209 25 1 5.1495 -5.9715 -3.5919 26 6 5.3467 -3.5931 -3.1808 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 0.2127 2.3203 0.0005 31 1 1.3339 4.5114 0.0019 32 1 4.1513 5.3421 1.0282 33 1 4.9437 4.9384 -0.5136 34 1 3.3578 5.7464 -0.5129 35 1 5.1344 2.5753 0.0086 36 1 3.7470 -0.7419 0.5879 37 1 5.2326 0.2262 0.4324 38 1 6.7360 -1.9600 -0.3682 39 1 5.1222 -2.2036 0.3420 40 1 5.7758 -3.3919 -0.8108 41 1 4.6271 -1.5704 -3.7474 42 1 7.4142 -1.4498 -2.9932 43 1 6.8671 -2.1221 -4.5880 44 1 9.3245 -6.1707 -1.6937 45 1 5.0885 -3.9457 -4.1793 46 1 4.8090 -4.1223 -2.3942 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001043252939.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:23 Heat of formation + Delta-G solvation = 4.400710 kcal Electronic energy + Delta-G solvation = -27227.666711 eV Core-core repulsion = 23505.511909 eV Total energy + Delta-G solvation = -3722.154802 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.70993 -41.02054 -39.46591 -38.52493 -35.69692 -34.54593 -34.05927 -32.47932 -30.31793 -28.84664 -28.68856 -27.68592 -26.97273 -26.69029 -24.56532 -23.11741 -22.28036 -21.21996 -20.01979 -19.30571 -18.87540 -18.27887 -17.62353 -17.49856 -16.67275 -16.48386 -16.27825 -16.01855 -15.76698 -15.36334 -15.23686 -15.07013 -14.77636 -14.48721 -14.28541 -14.09658 -14.03440 -13.46376 -13.32557 -13.14065 -12.97381 -12.91219 -12.84593 -12.65226 -12.60390 -12.41918 -12.23342 -12.11483 -11.72561 -11.67618 -11.32061 -11.15412 -11.01556 -10.86759 -9.78792 -9.57982 -9.17772 -8.89938 -8.61590 -5.43932 0.36092 0.50330 1.39630 1.47713 1.61824 1.67262 1.98853 2.42934 2.54212 2.80477 2.93275 3.25387 3.56822 3.66255 3.79294 3.86278 4.01660 4.20406 4.22032 4.27772 4.32332 4.36453 4.39243 4.43862 4.46344 4.55436 4.58587 4.63603 4.69057 4.70597 4.76310 4.78111 4.80410 4.90187 4.90918 5.11151 5.13625 5.19231 5.22108 5.38850 5.46242 5.59145 5.70379 5.92066 5.96868 6.45187 6.51038 6.72092 7.17593 7.34218 8.28924 8.93877 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.020370 B = 0.003363 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.228635 B = 8324.959660 C = 9009.198869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.337 6.337 3 C 0.117 3.883 4 C -0.211 4.211 5 C -0.086 4.086 6 C -0.133 4.133 7 C -0.106 4.106 8 C -0.084 4.084 9 C -0.113 4.113 10 C -0.085 4.085 11 C 0.521 3.479 12 O -0.573 6.573 13 N -0.588 5.588 14 C 0.087 3.913 15 C 0.116 3.884 16 C 0.111 3.889 17 N -0.647 5.647 18 C -0.279 4.279 19 H 0.051 0.949 20 C -0.078 4.078 21 N -0.972 5.972 22 Si 1.101 2.899 23 H -0.308 1.308 24 H -0.267 1.267 25 H -0.265 1.265 26 C 0.084 3.916 27 H 0.111 0.889 28 H 0.071 0.929 29 H 0.057 0.943 30 H 0.147 0.853 31 H 0.148 0.852 32 H 0.079 0.921 33 H 0.065 0.935 34 H 0.075 0.925 35 H 0.135 0.865 36 H 0.113 0.887 37 H 0.120 0.880 38 H 0.051 0.949 39 H 0.092 0.908 40 H 0.063 0.937 41 H 0.116 0.884 42 H 0.043 0.957 43 H 0.064 0.936 44 H 0.247 0.753 45 H 0.070 0.930 46 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.197 21.616 6.803 28.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.251 6.251 3 C 0.072 3.928 4 C -0.229 4.229 5 C -0.104 4.104 6 C -0.133 4.133 7 C -0.162 4.162 8 C -0.102 4.102 9 C -0.114 4.114 10 C -0.124 4.124 11 C 0.311 3.689 12 O -0.452 6.452 13 N -0.320 5.320 14 C -0.055 4.055 15 C 0.010 3.990 16 C -0.016 4.016 17 N -0.376 5.376 18 C -0.407 4.407 19 H 0.069 0.931 20 C -0.270 4.270 21 N -0.617 5.617 22 Si 0.928 3.072 23 H -0.237 1.237 24 H -0.193 1.193 25 H -0.191 1.191 26 C -0.041 4.041 27 H 0.130 0.870 28 H 0.089 0.911 29 H 0.076 0.924 30 H 0.164 0.836 31 H 0.166 0.834 32 H 0.098 0.902 33 H 0.084 0.916 34 H 0.094 0.906 35 H 0.153 0.847 36 H 0.131 0.869 37 H 0.138 0.862 38 H 0.070 0.930 39 H 0.110 0.890 40 H 0.081 0.919 41 H 0.134 0.866 42 H 0.062 0.938 43 H 0.082 0.918 44 H 0.056 0.944 45 H 0.087 0.913 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -18.144 20.286 6.608 28.007 hybrid contribution 1.632 0.754 -0.415 1.845 sum -16.512 21.040 6.193 27.454 Atomic orbital electron populations 1.23276 0.76770 1.05179 1.02084 1.86039 1.23218 1.27164 1.88634 1.19018 0.91970 0.84984 0.96847 1.21443 1.00906 0.92001 1.08550 1.21139 0.94111 0.97640 0.97532 1.20116 0.94100 0.96154 1.02912 1.20740 1.00330 0.92190 1.02981 1.20965 1.00331 0.90725 0.98185 1.18826 0.90746 0.94940 1.06861 1.20505 1.02406 0.96428 0.93076 1.20992 0.76575 0.79182 0.92111 1.90634 1.49799 1.57128 1.47667 1.47490 1.52161 1.25468 1.06838 1.21819 0.97847 0.97433 0.88414 1.22279 0.97600 0.94661 0.84472 1.22934 0.94792 0.86303 0.97565 1.46094 1.04279 1.15588 1.71653 1.19879 0.90717 0.92587 1.37494 0.93144 1.26839 1.08636 0.91715 0.99794 1.71022 1.01099 1.35763 1.53841 0.83368 0.71452 0.74263 0.78112 1.23655 1.19303 1.19073 1.23336 0.85651 0.95146 0.99955 0.87036 0.91060 0.92396 0.83559 0.83382 0.90233 0.91645 0.90590 0.84729 0.86920 0.86151 0.93010 0.88976 0.91855 0.86606 0.93828 0.91845 0.94400 0.91285 0.92850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 9.81 113.37 1.11 1.45 16 2 O -0.34 -8.42 9.63 -92.43 -0.89 -9.31 16 3 C 0.12 2.96 6.66 22.50 0.15 3.11 16 4 C -0.21 -4.29 9.04 22.36 0.20 -4.09 16 5 C -0.09 -1.58 9.69 22.25 0.22 -1.36 16 6 C -0.13 -2.60 5.88 -19.85 -0.12 -2.71 16 7 C -0.11 -1.42 10.01 71.23 0.71 -0.71 16 8 C -0.08 -1.92 9.33 22.26 0.21 -1.71 16 9 C -0.11 -2.92 4.39 -19.77 -0.09 -3.00 16 10 C -0.08 -2.15 4.11 29.10 0.12 -2.03 16 11 C 0.52 17.00 7.67 87.66 0.67 17.68 16 12 O -0.57 -22.12 15.54 -3.05 -0.05 -22.17 16 13 N -0.59 -19.98 3.12 -821.39 -2.56 -22.54 16 14 C 0.09 2.88 9.34 127.77 1.19 4.07 16 15 C 0.12 4.16 4.69 45.55 0.21 4.38 16 16 C 0.11 4.32 8.31 83.18 0.69 5.01 16 17 N -0.65 -30.22 2.40 -737.96 -1.77 -31.99 16 18 C -0.28 -15.66 10.69 84.03 0.90 -14.76 16 19 H 0.05 3.09 8.05 -2.91 -0.02 3.06 16 20 C -0.08 -4.52 5.50 84.86 0.47 -4.05 16 21 N -0.97 -61.75 13.71 21.65 0.30 -61.46 16 22 Si 1.10 52.36 24.72 68.60 1.70 54.05 16 23 H -0.31 -15.25 7.11 99.48 0.71 -14.54 16 24 H -0.27 -11.42 6.48 99.48 0.64 -10.77 16 25 H -0.27 -11.55 6.16 99.48 0.61 -10.93 16 26 C 0.08 3.39 4.72 83.27 0.39 3.78 16 27 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.07 0.83 7.66 -2.39 -0.02 0.81 16 29 H 0.06 0.85 7.66 -2.39 -0.02 0.83 16 30 H 0.15 2.20 6.30 -2.91 -0.02 2.19 16 31 H 0.15 1.81 8.06 -2.91 -0.02 1.78 16 32 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.06 0.88 8.09 -2.39 -0.02 0.86 16 34 H 0.08 0.83 8.08 -2.39 -0.02 0.81 16 35 H 0.13 2.68 8.06 -2.91 -0.02 2.65 16 36 H 0.11 2.65 6.95 -2.39 -0.02 2.63 16 37 H 0.12 2.48 8.02 -2.39 -0.02 2.47 16 38 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.09 2.35 6.44 -2.39 -0.02 2.33 16 40 H 0.06 2.53 4.85 -2.39 -0.01 2.52 16 41 H 0.12 3.98 7.29 -2.39 -0.02 3.97 16 42 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 43 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 44 H 0.25 15.77 8.73 -92.71 -0.81 14.96 16 45 H 0.07 2.64 7.67 -2.39 -0.02 2.62 16 46 H 0.05 2.19 3.88 -2.39 -0.01 2.18 16 Total: -1.00 -74.58 365.18 4.56 -70.02 By element: Atomic # 1 Polarization: 17.56 SS G_CDS: 0.79 Total: 18.35 kcal Atomic # 6 Polarization: -2.00 SS G_CDS: 7.05 Total: 5.05 kcal Atomic # 7 Polarization: -111.96 SS G_CDS: -4.03 Total: -115.99 kcal Atomic # 8 Polarization: -30.54 SS G_CDS: -0.94 Total: -31.48 kcal Atomic # 14 Polarization: 52.36 SS G_CDS: 1.70 Total: 54.05 kcal Total: -74.58 4.56 -70.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001043252939.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.424 kcal (2) G-P(sol) polarization free energy of solvation -74.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.023 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds