Wall clock time and date at job start Tue Mar 31 2020 12:28:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86793 * 120.00063 * 2 1 4 4 H 1.48506 * 109.47145 * 266.33240 * 3 2 1 5 5 H 1.48502 * 109.47303 * 26.32764 * 3 2 1 6 6 H 1.48497 * 109.47415 * 146.33181 * 3 2 1 7 7 C 1.38817 * 120.00130 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99817 * 346.20977 * 7 2 1 9 9 N 1.36929 * 120.00070 * 166.20207 * 7 2 1 10 10 C 1.48141 * 127.81289 * 160.66376 * 9 7 2 11 11 C 1.54382 * 104.64368 * 140.43426 * 10 9 7 12 12 C 1.54251 * 104.89712 * 23.91493 * 11 10 9 13 13 C 1.48119 * 127.81064 * 340.61248 * 9 7 2 14 14 C 1.47114 * 112.24604 * 237.45627 * 12 11 10 15 15 C 1.52514 * 114.26752 * 301.69762 * 14 12 11 16 16 C 1.50886 * 109.30517 * 275.12815 * 15 14 12 17 17 C 1.53932 * 110.11768 * 91.92039 * 16 15 14 18 18 N 1.47567 * 112.20606 * 319.40246 * 17 16 15 19 19 C 1.34777 * 118.62093 * 137.78359 * 18 17 16 20 20 O 1.21605 * 120.00295 * 352.27987 * 19 18 17 21 21 C 1.47386 * 119.99518 * 172.27193 * 19 18 17 22 22 C 1.47017 * 127.18771 * 198.91253 * 21 19 18 23 23 C 1.34180 * 105.95166 * 179.97438 * 22 21 19 24 24 O 1.34221 * 109.12459 * 0.02562 * 23 22 21 25 25 C 1.33656 * 110.90659 * 359.75931 * 24 23 22 26 26 C 1.44634 * 122.75079 * 317.80225 * 18 17 16 27 27 H 0.96997 * 120.00098 * 0.02562 * 1 2 3 28 28 H 1.09001 * 110.39727 * 21.65018 * 10 9 7 29 29 H 1.08993 * 110.50416 * 259.27803 * 10 9 7 30 30 H 1.08999 * 110.36219 * 265.05690 * 11 10 9 31 31 H 1.09006 * 110.35006 * 142.76644 * 11 10 9 32 32 H 1.09004 * 110.41081 * 100.65959 * 13 9 7 33 33 H 1.08998 * 110.41313 * 338.22405 * 13 9 7 34 34 H 1.08990 * 108.52285 * 180.45938 * 14 12 11 35 35 H 1.08998 * 108.52650 * 62.92966 * 14 12 11 36 36 H 1.09001 * 109.50517 * 35.07619 * 15 14 12 37 37 H 1.09000 * 109.49882 * 155.18277 * 15 14 12 38 38 H 1.08996 * 109.36704 * 212.11851 * 16 15 14 39 39 H 1.09006 * 109.36434 * 331.72875 * 16 15 14 40 40 H 1.09000 * 108.93275 * 198.69642 * 17 16 15 41 41 H 1.09005 * 108.85803 * 80.05785 * 17 16 15 42 42 H 1.07999 * 127.02990 * 359.97438 * 22 21 19 43 43 H 1.07996 * 125.44219 * 179.97438 * 23 22 21 44 44 H 1.07997 * 125.80237 * 180.27090 * 25 24 23 45 45 H 1.08994 * 109.47041 * 330.48802 * 26 18 17 46 46 H 1.09001 * 109.47306 * 210.49528 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.5753 2.0016 -1.3973 5 1 1.4110 2.6738 0.6209 6 1 3.5068 1.4638 0.7761 7 6 2.0104 -1.2022 0.0005 8 1 1.4937 -2.1240 0.2239 9 7 3.3500 -1.2194 -0.2823 10 6 4.3324 -2.2807 0.0386 11 6 5.2432 -2.3587 -1.2055 12 6 5.1206 -0.9740 -1.8741 13 6 4.1444 -0.1815 -0.9792 14 6 4.6537 -1.0670 -3.2661 15 6 5.5432 -1.9137 -4.1703 16 6 6.6709 -1.0623 -4.6995 17 6 7.8941 -1.1668 -3.7708 18 7 7.5136 -1.1631 -2.3450 19 6 8.1337 -2.0193 -1.5091 20 8 8.8828 -2.8679 -1.9536 21 6 7.9040 -1.9271 -0.0561 22 6 8.7454 -2.4831 1.0136 23 6 8.1442 -2.1505 2.1661 24 8 7.0296 -1.4533 1.8955 25 6 6.8689 -1.3038 0.5771 26 6 6.5029 -0.2793 -1.8072 27 1 -0.4850 0.8400 -0.0004 28 1 3.8252 -3.2322 0.1984 29 1 4.9144 -2.0087 0.9191 30 1 4.8946 -3.1387 -1.8824 31 1 6.2751 -2.5464 -0.9087 32 1 4.6951 0.4233 -0.2587 33 1 3.4960 0.4482 -1.5885 34 1 4.5970 -0.0605 -3.6802 35 1 3.6513 -1.4952 -3.2673 36 1 5.9534 -2.7473 -3.6002 37 1 4.9548 -2.2971 -5.0039 38 1 6.9447 -1.4046 -5.6975 39 1 6.3453 -0.0234 -4.7526 40 1 8.5567 -0.3228 -3.9623 41 1 8.4267 -2.0917 -3.9924 42 1 9.6605 -3.0445 0.8960 43 1 8.4997 -2.4040 3.1539 44 1 6.0568 -0.7800 0.0950 45 1 6.4759 0.6402 -2.3918 46 1 6.7411 -0.0434 -0.7700 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045914866.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:44 Heat of formation + Delta-G solvation = 68.228891 kcal Electronic energy + Delta-G solvation = -29649.287825 eV Core-core repulsion = 25929.900820 eV Total energy + Delta-G solvation = -3719.387004 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.93936 -40.86363 -38.54918 -36.31243 -34.31558 -33.23668 -32.47110 -31.34894 -30.14277 -28.83591 -27.81551 -26.05916 -24.80659 -24.11713 -22.73625 -21.49504 -20.93603 -20.47851 -19.74819 -18.80110 -17.30760 -17.05324 -16.83005 -16.44291 -16.07139 -15.75288 -15.06854 -14.74241 -14.61613 -14.16339 -13.82278 -13.65048 -13.61556 -13.14020 -13.05935 -12.87255 -12.71780 -12.31520 -12.30338 -12.10888 -11.74457 -11.43073 -11.24107 -11.16352 -11.05226 -10.66839 -10.51989 -10.39910 -10.14551 -10.07939 -9.98401 -9.84536 -9.62905 -9.47547 -8.92033 -8.61633 -8.56337 -7.17635 -5.98095 -3.34115 1.40346 2.07871 2.82553 3.12417 3.21854 3.28257 3.34771 3.41105 4.40132 4.44748 4.62164 4.66432 4.70771 4.80728 4.87487 4.96710 4.99595 5.02714 5.22208 5.28313 5.42681 5.44719 5.46642 5.55886 5.60217 5.66132 5.67203 5.72389 5.85885 5.94619 5.96459 6.04334 6.09138 6.14017 6.26642 6.28865 6.32524 6.42424 6.48066 6.51334 6.59543 6.72438 6.73437 7.00316 7.33374 7.52377 8.18086 8.26073 8.71409 9.59173 10.11094 11.18400 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.013427 B = 0.006460 C = 0.004976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2084.820391 B = 4333.312891 C = 5625.167305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.019 3.981 3 Si 0.885 3.115 4 H -0.287 1.287 5 H -0.302 1.302 6 H -0.269 1.269 7 C -0.233 4.233 8 H 0.096 0.904 9 N -0.600 5.600 10 C 0.116 3.884 11 C -0.157 4.157 12 C -0.090 4.090 13 C 0.101 3.899 14 C -0.097 4.097 15 C -0.116 4.116 16 C -0.130 4.130 17 C 0.114 3.886 18 N -0.595 5.595 19 C 0.590 3.410 20 O -0.544 6.544 21 C -0.253 4.253 22 C -0.167 4.167 23 C -0.047 4.047 24 O -0.171 6.171 25 C 0.015 3.985 26 C 0.081 3.919 27 H 0.264 0.736 28 H 0.058 0.942 29 H 0.035 0.965 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.034 0.966 33 H 0.076 0.924 34 H 0.058 0.942 35 H 0.073 0.927 36 H 0.068 0.932 37 H 0.062 0.938 38 H 0.073 0.927 39 H 0.066 0.934 40 H 0.061 0.939 41 H 0.091 0.909 42 H 0.156 0.844 43 H 0.206 0.794 44 H 0.244 0.756 45 H 0.085 0.915 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.041 -0.614 -3.731 17.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.179 4.179 3 Si 0.717 3.283 4 H -0.215 1.215 5 H -0.230 1.230 6 H -0.194 1.194 7 C -0.360 4.360 8 H 0.113 0.887 9 N -0.325 5.325 10 C -0.009 4.009 11 C -0.196 4.196 12 C -0.092 4.092 13 C -0.025 4.025 14 C -0.134 4.134 15 C -0.154 4.154 16 C -0.168 4.168 17 C -0.007 4.007 18 N -0.326 5.326 19 C 0.381 3.619 20 O -0.423 6.423 21 C -0.258 4.258 22 C -0.186 4.186 23 C -0.113 4.113 24 O -0.065 6.065 25 C -0.054 4.054 26 C -0.042 4.042 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.052 0.948 30 H 0.088 0.912 31 H 0.098 0.902 32 H 0.051 0.949 33 H 0.094 0.906 34 H 0.076 0.924 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.081 0.919 38 H 0.092 0.908 39 H 0.085 0.915 40 H 0.080 0.920 41 H 0.109 0.891 42 H 0.174 0.826 43 H 0.222 0.778 44 H 0.260 0.740 45 H 0.103 0.897 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 16.948 -0.844 -3.721 17.372 hybrid contribution 0.385 0.952 -0.142 1.036 sum 17.333 0.108 -3.863 17.758 Atomic orbital electron populations 1.69739 1.05365 1.26507 1.54339 1.25011 0.95284 0.97375 1.00274 0.86969 0.79436 0.84629 0.77313 1.21454 1.22992 1.19421 1.18691 0.79804 0.94900 1.42610 0.88654 1.45238 1.04634 1.17971 1.64642 1.21987 0.90987 0.93847 0.94111 1.23369 1.01108 0.96357 0.98717 1.21228 0.94024 0.96948 0.97049 1.22375 0.93409 0.92993 0.93734 1.20277 1.00193 1.00026 0.92944 1.21073 0.96383 0.98869 0.99077 1.21793 0.95540 1.01061 0.98444 1.21829 0.96792 1.03215 0.78901 1.47458 1.38715 1.38016 1.08448 1.17274 0.79443 0.80468 0.84763 1.90738 1.38641 1.35191 1.77761 1.21406 1.00018 1.10035 0.94304 1.22669 1.01837 1.04014 0.90116 1.23949 0.87356 0.99706 1.00280 1.83939 1.39053 1.58054 1.25459 1.26655 0.99877 0.98593 0.80300 1.22648 0.87478 0.93464 1.00631 0.92629 0.92321 0.94782 0.91249 0.90178 0.94854 0.90644 0.92364 0.90845 0.91287 0.91886 0.90818 0.91487 0.92031 0.89102 0.82591 0.77756 0.74050 0.89709 0.88756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.56 13.97 55.49 0.78 -26.78 16 2 C 0.02 0.52 5.50 -17.43 -0.10 0.43 16 3 Si 0.89 21.40 24.48 -169.99 -4.16 17.24 16 4 H -0.29 -6.60 6.46 56.52 0.37 -6.23 16 5 H -0.30 -7.52 7.11 56.52 0.40 -7.12 16 6 H -0.27 -6.17 6.01 56.52 0.34 -5.84 16 7 C -0.23 -6.34 10.80 -15.06 -0.16 -6.50 16 8 H 0.10 2.79 8.06 -52.48 -0.42 2.36 16 9 N -0.60 -13.57 3.20 -168.93 -0.54 -14.11 16 10 C 0.12 2.22 6.57 -2.42 -0.02 2.21 16 11 C -0.16 -2.59 4.38 -25.35 -0.11 -2.70 16 12 C -0.09 -1.40 0.54 -155.00 -0.08 -1.48 16 13 C 0.10 1.97 3.33 -2.45 -0.01 1.96 16 14 C -0.10 -1.43 3.85 -29.81 -0.11 -1.54 16 15 C -0.12 -1.45 5.35 -28.04 -0.15 -1.60 16 16 C -0.13 -1.34 5.71 -27.31 -0.16 -1.49 16 17 C 0.11 1.31 6.14 -2.97 -0.02 1.29 16 18 N -0.59 -7.98 2.04 -173.82 -0.35 -8.33 16 19 C 0.59 9.19 6.05 -12.54 -0.08 9.12 16 20 O -0.54 -9.82 16.29 5.27 0.09 -9.73 16 21 C -0.25 -3.74 4.97 -103.27 -0.51 -4.26 16 22 C -0.17 -2.13 11.07 -37.45 -0.41 -2.55 16 23 C -0.05 -0.53 12.03 29.30 0.35 -0.18 16 24 O -0.17 -2.43 10.22 7.63 0.08 -2.35 16 25 C 0.02 0.22 5.75 30.07 0.17 0.40 16 26 C 0.08 1.08 4.16 -4.06 -0.02 1.07 16 27 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 28 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 29 H 0.03 0.64 5.19 -51.93 -0.27 0.37 16 30 H 0.07 1.17 6.97 -51.93 -0.36 0.81 16 31 H 0.08 1.28 2.27 -51.93 -0.12 1.16 16 32 H 0.03 0.64 5.16 -51.93 -0.27 0.37 16 33 H 0.08 1.60 4.69 -51.93 -0.24 1.35 16 34 H 0.06 0.80 7.37 -51.93 -0.38 0.42 16 35 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.07 0.97 6.05 -51.93 -0.31 0.66 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.07 0.66 7.31 -51.93 -0.38 0.28 16 40 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.09 1.14 6.89 -51.93 -0.36 0.78 16 42 H 0.16 1.76 8.06 -52.49 -0.42 1.34 16 43 H 0.21 1.43 8.06 -52.49 -0.42 1.01 16 44 H 0.24 3.77 1.26 -52.49 -0.07 3.70 16 45 H 0.08 0.98 8.09 -51.93 -0.42 0.56 16 46 H 0.10 1.27 3.71 -51.93 -0.19 1.07 16 LS Contribution 324.12 15.07 4.88 4.88 Total: -1.00 -31.84 324.12 -6.63 -38.48 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: -5.99 Total: 6.54 kcal Atomic # 6 Polarization: -4.43 SS G_CDS: -1.41 Total: -5.84 kcal Atomic # 7 Polarization: -49.11 SS G_CDS: -0.12 Total: -49.23 kcal Atomic # 8 Polarization: -12.25 SS G_CDS: 0.16 Total: -12.08 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.16 Total: 17.24 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -31.84 -6.63 -38.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045914866.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.707 kcal (2) G-P(sol) polarization free energy of solvation -31.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.478 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds