Wall clock time and date at job start Tue Mar 31 2020 12:28:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86793 * 120.00063 * 2 1 4 4 H 1.48506 * 109.47145 * 266.33240 * 3 2 1 5 5 H 1.48502 * 109.47303 * 26.32764 * 3 2 1 6 6 H 1.48497 * 109.47415 * 146.33181 * 3 2 1 7 7 C 1.38817 * 120.00130 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99817 * 346.20977 * 7 2 1 9 9 N 1.36929 * 120.00070 * 166.20207 * 7 2 1 10 10 C 1.48141 * 127.81289 * 160.66376 * 9 7 2 11 11 C 1.54382 * 104.64368 * 140.43426 * 10 9 7 12 12 C 1.54251 * 104.89712 * 23.91493 * 11 10 9 13 13 C 1.48119 * 127.81064 * 340.61248 * 9 7 2 14 14 C 1.47114 * 112.24604 * 237.45627 * 12 11 10 15 15 C 1.52514 * 114.26752 * 301.69762 * 14 12 11 16 16 C 1.50886 * 109.30517 * 275.12815 * 15 14 12 17 17 C 1.53932 * 110.11768 * 91.92039 * 16 15 14 18 18 N 1.47567 * 112.20606 * 319.40246 * 17 16 15 19 19 C 1.34777 * 118.62093 * 137.78359 * 18 17 16 20 20 O 1.21605 * 120.00295 * 352.27987 * 19 18 17 21 21 C 1.47386 * 119.99518 * 172.27193 * 19 18 17 22 22 C 1.47017 * 127.18771 * 198.91253 * 21 19 18 23 23 C 1.34180 * 105.95166 * 179.97438 * 22 21 19 24 24 O 1.34221 * 109.12459 * 0.02562 * 23 22 21 25 25 C 1.33656 * 110.90659 * 359.75931 * 24 23 22 26 26 C 1.44634 * 122.75079 * 317.80225 * 18 17 16 27 27 H 0.96997 * 120.00098 * 0.02562 * 1 2 3 28 28 H 1.09001 * 110.39727 * 21.65018 * 10 9 7 29 29 H 1.08993 * 110.50416 * 259.27803 * 10 9 7 30 30 H 1.08999 * 110.36219 * 265.05690 * 11 10 9 31 31 H 1.09006 * 110.35006 * 142.76644 * 11 10 9 32 32 H 1.09004 * 110.41081 * 100.65959 * 13 9 7 33 33 H 1.08998 * 110.41313 * 338.22405 * 13 9 7 34 34 H 1.08990 * 108.52285 * 180.45938 * 14 12 11 35 35 H 1.08998 * 108.52650 * 62.92966 * 14 12 11 36 36 H 1.09001 * 109.50517 * 35.07619 * 15 14 12 37 37 H 1.09000 * 109.49882 * 155.18277 * 15 14 12 38 38 H 1.08996 * 109.36704 * 212.11851 * 16 15 14 39 39 H 1.09006 * 109.36434 * 331.72875 * 16 15 14 40 40 H 1.09000 * 108.93275 * 198.69642 * 17 16 15 41 41 H 1.09005 * 108.85803 * 80.05785 * 17 16 15 42 42 H 1.07999 * 127.02990 * 359.97438 * 22 21 19 43 43 H 1.07996 * 125.44219 * 179.97438 * 23 22 21 44 44 H 1.07997 * 125.80237 * 180.27090 * 25 24 23 45 45 H 1.08994 * 109.47041 * 330.48802 * 26 18 17 46 46 H 1.09001 * 109.47306 * 210.49528 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.5753 2.0016 -1.3973 5 1 1.4110 2.6738 0.6209 6 1 3.5068 1.4638 0.7761 7 6 2.0104 -1.2022 0.0005 8 1 1.4937 -2.1240 0.2239 9 7 3.3500 -1.2194 -0.2823 10 6 4.3324 -2.2807 0.0386 11 6 5.2432 -2.3587 -1.2055 12 6 5.1206 -0.9740 -1.8741 13 6 4.1444 -0.1815 -0.9792 14 6 4.6537 -1.0670 -3.2661 15 6 5.5432 -1.9137 -4.1703 16 6 6.6709 -1.0623 -4.6995 17 6 7.8941 -1.1668 -3.7708 18 7 7.5136 -1.1631 -2.3450 19 6 8.1337 -2.0193 -1.5091 20 8 8.8828 -2.8679 -1.9536 21 6 7.9040 -1.9271 -0.0561 22 6 8.7454 -2.4831 1.0136 23 6 8.1442 -2.1505 2.1661 24 8 7.0296 -1.4533 1.8955 25 6 6.8689 -1.3038 0.5771 26 6 6.5029 -0.2793 -1.8072 27 1 -0.4850 0.8400 -0.0004 28 1 3.8252 -3.2322 0.1984 29 1 4.9144 -2.0087 0.9191 30 1 4.8946 -3.1387 -1.8824 31 1 6.2751 -2.5464 -0.9087 32 1 4.6951 0.4233 -0.2587 33 1 3.4960 0.4482 -1.5885 34 1 4.5970 -0.0605 -3.6802 35 1 3.6513 -1.4952 -3.2673 36 1 5.9534 -2.7473 -3.6002 37 1 4.9548 -2.2971 -5.0039 38 1 6.9447 -1.4046 -5.6975 39 1 6.3453 -0.0234 -4.7526 40 1 8.5567 -0.3228 -3.9623 41 1 8.4267 -2.0917 -3.9924 42 1 9.6605 -3.0445 0.8960 43 1 8.4997 -2.4040 3.1539 44 1 6.0568 -0.7800 0.0950 45 1 6.4759 0.6402 -2.3918 46 1 6.7411 -0.0434 -0.7700 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045914866.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:44 Heat of formation + Delta-G solvation = 47.747758 kcal Electronic energy + Delta-G solvation = -29650.175953 eV Core-core repulsion = 25929.900820 eV Total energy + Delta-G solvation = -3720.275133 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.01931 -42.02541 -39.87409 -37.59241 -35.44633 -34.86370 -33.68559 -32.94546 -31.35026 -30.25528 -29.04876 -27.36268 -26.17778 -25.52365 -23.96866 -22.54908 -22.44634 -21.62644 -20.83426 -20.04302 -18.99980 -18.33017 -18.08028 -17.62117 -17.27156 -17.00785 -16.38129 -16.12293 -15.73551 -15.53178 -15.36872 -14.84962 -14.74235 -14.56700 -14.41715 -14.18689 -13.95749 -13.58507 -13.54543 -13.29332 -13.20189 -12.90767 -12.65695 -12.60049 -12.26779 -12.13785 -11.90508 -11.77410 -11.59499 -11.38589 -11.32498 -11.23005 -11.06939 -10.90756 -10.71050 -9.72265 -9.62041 -9.09410 -8.13729 -5.46823 0.28382 1.12861 1.29018 1.41139 1.49817 1.79238 2.12744 2.14856 2.42507 3.05806 3.19345 3.33388 3.53980 3.57325 3.66976 3.72995 3.86716 3.97486 4.03024 4.09265 4.24910 4.25822 4.31670 4.44284 4.52981 4.57328 4.57570 4.65221 4.71022 4.75409 4.78505 4.89493 4.90564 4.96268 5.03864 5.10331 5.18313 5.23082 5.27923 5.36094 5.42461 5.44771 5.57341 5.63768 5.99482 6.11416 6.22793 6.67608 7.03806 7.48861 8.11098 9.06494 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.013427 B = 0.006460 C = 0.004976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2084.820391 B = 4333.312891 C = 5625.167305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.043 4.043 3 Si 0.947 3.053 4 H -0.264 1.264 5 H -0.313 1.313 6 H -0.247 1.247 7 C -0.225 4.225 8 H 0.055 0.945 9 N -0.619 5.619 10 C 0.116 3.884 11 C -0.145 4.145 12 C -0.079 4.079 13 C 0.098 3.902 14 C -0.096 4.096 15 C -0.111 4.111 16 C -0.122 4.122 17 C 0.110 3.890 18 N -0.588 5.588 19 C 0.585 3.415 20 O -0.575 6.575 21 C -0.263 4.263 22 C -0.186 4.186 23 C -0.027 4.027 24 O -0.184 6.184 25 C 0.003 3.997 26 C 0.085 3.915 27 H 0.262 0.738 28 H 0.043 0.957 29 H 0.047 0.953 30 H 0.059 0.941 31 H 0.091 0.909 32 H 0.049 0.951 33 H 0.062 0.938 34 H 0.075 0.925 35 H 0.039 0.961 36 H 0.050 0.950 37 H 0.071 0.929 38 H 0.096 0.904 39 H 0.082 0.918 40 H 0.086 0.914 41 H 0.078 0.922 42 H 0.168 0.832 43 H 0.249 0.751 44 H 0.236 0.764 45 H 0.115 0.885 46 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.207 0.934 -4.354 20.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.614 5.614 2 C -0.236 4.236 3 Si 0.775 3.225 4 H -0.191 1.191 5 H -0.242 1.242 6 H -0.171 1.171 7 C -0.353 4.353 8 H 0.073 0.927 9 N -0.344 5.344 10 C -0.009 4.009 11 C -0.183 4.183 12 C -0.082 4.082 13 C -0.027 4.027 14 C -0.134 4.134 15 C -0.148 4.148 16 C -0.160 4.160 17 C -0.011 4.011 18 N -0.318 5.318 19 C 0.376 3.624 20 O -0.456 6.456 21 C -0.268 4.268 22 C -0.205 4.205 23 C -0.092 4.092 24 O -0.079 6.079 25 C -0.066 4.066 26 C -0.039 4.039 27 H 0.071 0.929 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.077 0.923 31 H 0.109 0.891 32 H 0.067 0.933 33 H 0.080 0.920 34 H 0.093 0.907 35 H 0.058 0.942 36 H 0.068 0.932 37 H 0.089 0.911 38 H 0.114 0.886 39 H 0.100 0.900 40 H 0.104 0.896 41 H 0.096 0.904 42 H 0.185 0.815 43 H 0.265 0.735 44 H 0.251 0.749 45 H 0.133 0.867 46 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 20.165 0.698 -4.372 20.645 hybrid contribution -0.589 0.306 0.092 0.670 sum 19.576 1.004 -4.280 20.064 Atomic orbital electron populations 1.69904 1.07343 1.27228 1.56928 1.25727 0.95976 1.01151 1.00794 0.85964 0.78585 0.79303 0.78646 1.19057 1.24243 1.17074 1.18531 0.81971 0.93548 1.41242 0.92680 1.45219 1.03763 1.19826 1.65635 1.22099 0.90611 0.92255 0.95889 1.23252 1.00846 0.96940 0.97248 1.21097 0.94815 0.95667 0.96648 1.22503 0.93469 0.92567 0.94176 1.20299 0.98898 1.01190 0.92991 1.21010 0.96914 0.98279 0.98621 1.21767 0.93838 1.01412 0.99008 1.22031 0.97664 1.03651 0.77763 1.47508 1.37900 1.37183 1.09187 1.17487 0.79289 0.80351 0.85298 1.90721 1.40163 1.36467 1.78298 1.21562 1.00583 1.10236 0.94399 1.22927 1.02605 1.04954 0.90062 1.24781 0.85521 0.97212 1.01720 1.83939 1.40226 1.58569 1.25117 1.26412 0.99990 0.99470 0.80731 1.22618 0.85525 0.93947 1.01798 0.92938 0.93837 0.93499 0.92250 0.89099 0.93309 0.92029 0.90666 0.94187 0.93166 0.91067 0.88570 0.89979 0.89596 0.90393 0.81463 0.73477 0.74922 0.86737 0.88312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.47 13.97 21.65 0.30 -60.17 16 2 C -0.04 -2.47 5.50 84.86 0.47 -2.01 16 3 Si 0.95 43.95 24.48 68.60 1.68 45.62 16 4 H -0.26 -11.23 6.46 99.48 0.64 -10.58 16 5 H -0.31 -15.07 7.11 99.48 0.71 -14.36 16 6 H -0.25 -10.43 6.01 99.48 0.60 -9.83 16 7 C -0.22 -12.67 10.80 84.04 0.91 -11.76 16 8 H 0.06 3.45 8.06 -2.91 -0.02 3.43 16 9 N -0.62 -28.21 3.20 -688.36 -2.21 -30.42 16 10 C 0.12 4.47 6.57 86.53 0.57 5.04 16 11 C -0.14 -4.70 4.38 31.49 0.14 -4.56 16 12 C -0.08 -2.35 0.54 -52.50 -0.03 -2.37 16 13 C 0.10 3.65 3.33 86.52 0.29 3.94 16 14 C -0.10 -2.67 3.85 28.60 0.11 -2.56 16 15 C -0.11 -2.52 5.35 29.75 0.16 -2.36 16 16 C -0.12 -2.05 5.71 30.22 0.17 -1.87 16 17 C 0.11 2.15 6.14 86.49 0.53 2.68 16 18 N -0.59 -14.16 2.04 -822.11 -1.67 -15.84 16 19 C 0.58 17.18 6.05 86.65 0.52 17.70 16 20 O -0.57 -20.07 16.29 -4.05 -0.07 -20.13 16 21 C -0.26 -7.28 4.97 -18.99 -0.09 -7.38 16 22 C -0.19 -4.32 11.07 23.65 0.26 -4.06 16 23 C -0.03 -0.53 12.03 66.89 0.80 0.28 16 24 O -0.18 -4.78 10.22 4.37 0.04 -4.74 16 25 C 0.00 0.09 5.75 67.39 0.39 0.48 16 26 C 0.08 1.98 4.16 87.36 0.36 2.34 16 27 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 28 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.05 1.72 5.19 -2.39 -0.01 1.71 16 30 H 0.06 2.03 6.97 -2.39 -0.02 2.01 16 31 H 0.09 2.82 2.27 -2.38 -0.01 2.82 16 32 H 0.05 1.70 5.16 -2.38 -0.01 1.69 16 33 H 0.06 2.48 4.69 -2.39 -0.01 2.47 16 34 H 0.07 1.83 7.37 -2.39 -0.02 1.81 16 35 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.05 1.35 6.05 -2.39 -0.01 1.33 16 37 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.08 1.19 7.31 -2.38 -0.02 1.17 16 40 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.08 1.78 6.89 -2.38 -0.02 1.76 16 42 H 0.17 3.42 8.06 -2.91 -0.02 3.39 16 43 H 0.25 2.35 8.06 -2.91 -0.02 2.33 16 44 H 0.24 6.75 1.26 -2.91 0.00 6.75 16 45 H 0.11 2.07 8.09 -2.39 -0.02 2.05 16 46 H 0.10 2.33 3.71 -2.39 -0.01 2.32 16 Total: -1.00 -72.47 324.12 4.49 -67.97 By element: Atomic # 1 Polarization: 23.32 SS G_CDS: 0.85 Total: 24.17 kcal Atomic # 6 Polarization: -12.03 SS G_CDS: 5.56 Total: -6.47 kcal Atomic # 7 Polarization: -102.85 SS G_CDS: -3.58 Total: -106.42 kcal Atomic # 8 Polarization: -24.85 SS G_CDS: -0.02 Total: -24.87 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 1.68 Total: 45.62 kcal Total: -72.47 4.49 -67.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045914866.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.721 kcal (2) G-P(sol) polarization free energy of solvation -72.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.973 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds