Wall clock time and date at job start Tue Mar 31 2020 12:43:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38379 * 119.92792 * 2 1 4 4 C 1.38335 * 120.29227 * 180.02562 * 3 2 1 5 5 C 1.37979 * 120.14889 * 0.02562 * 4 3 2 6 6 C 1.39563 * 119.84823 * 359.97438 * 5 4 3 7 7 C 1.47849 * 120.14148 * 179.97438 * 6 5 4 8 8 O 1.21551 * 120.00004 * 229.03526 * 7 6 5 9 9 N 1.34778 * 119.99903 * 49.04354 * 7 6 5 10 10 C 1.46501 * 119.99889 * 5.49697 * 9 7 6 11 11 C 1.46503 * 119.99891 * 185.50232 * 9 7 6 12 12 H 1.08996 * 110.88412 * 357.56522 * 11 9 7 13 13 C 1.54901 * 111.00708 * 121.44861 * 11 9 7 14 14 N 1.47422 * 104.83306 * 155.07919 * 13 11 9 15 15 C 1.36939 * 125.64788 * 155.83485 * 14 13 11 16 16 H 1.07997 * 119.99972 * 5.43800 * 15 14 13 17 17 C 1.38817 * 119.99930 * 185.44389 * 15 14 13 18 18 N 1.31620 * 119.99879 * 349.38305 * 17 15 14 19 19 Si 1.86798 * 119.99992 * 169.38373 * 17 15 14 20 20 H 1.48511 * 109.46968 * 94.95463 * 19 17 15 21 21 H 1.48497 * 109.47378 * 214.95298 * 19 17 15 22 22 H 1.48506 * 109.47151 * 334.95786 * 19 17 15 23 23 C 1.47022 * 108.70500 * 335.87795 * 14 13 11 24 24 C 1.54326 * 107.27039 * 1.05410 * 23 14 13 25 25 H 1.09008 * 110.71740 * 263.83385 * 24 23 14 26 26 O 1.42898 * 110.72190 * 140.56205 * 24 23 14 27 27 C 1.37938 * 119.92581 * 180.27755 * 2 1 3 28 28 C 1.50695 * 120.07588 * 359.97438 * 27 2 1 29 29 H 1.09004 * 109.47239 * 90.00568 * 1 2 3 30 30 H 1.09003 * 109.47353 * 209.99858 * 1 2 3 31 31 H 1.08998 * 109.47120 * 330.00488 * 1 2 3 32 32 H 1.08001 * 119.85360 * 0.03735 * 3 2 1 33 33 H 1.08005 * 119.93285 * 179.97438 * 4 3 2 34 34 H 1.07999 * 120.07983 * 180.02562 * 5 4 3 35 35 H 1.09001 * 109.47015 * 275.34906 * 10 9 7 36 36 H 1.09001 * 109.46783 * 155.36017 * 10 9 7 37 37 H 1.08991 * 109.47155 * 35.35362 * 10 9 7 38 38 H 1.08999 * 110.36964 * 273.92376 * 13 11 9 39 39 H 1.09003 * 110.36531 * 36.13843 * 13 11 9 40 40 H 0.96995 * 120.00005 * 180.02562 * 18 17 15 41 41 H 1.08999 * 109.88639 * 120.47172 * 23 14 13 42 42 H 1.09004 * 109.87792 * 241.48522 * 23 14 13 43 43 H 0.96696 * 113.99817 * 66.47181 * 26 24 23 44 44 H 1.09005 * 109.47456 * 267.95388 * 28 27 2 45 45 H 1.09006 * 109.47363 * 27.95816 * 28 27 2 46 46 H 1.09005 * 109.47498 * 147.95601 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1993 0.0000 4 6 3.5807 1.2081 -0.0005 5 6 4.2812 0.0194 -0.0016 6 6 3.5911 -1.1937 -0.0016 7 6 4.3352 -2.4712 -0.0033 8 8 4.0439 -3.3432 -0.7984 9 7 5.3365 -2.6690 0.8769 10 6 5.6092 -1.6697 1.9128 11 6 6.1523 -3.8833 0.7976 12 1 5.7955 -4.5400 0.0042 13 6 7.6486 -3.5351 0.5993 14 7 8.3807 -4.6971 1.1351 15 6 9.6490 -5.0735 0.7815 16 1 10.2317 -4.4517 0.1180 17 6 10.1857 -6.2544 1.2759 18 7 9.5691 -6.9047 2.2399 19 14 11.7831 -6.9206 0.5731 20 1 12.9208 -6.4661 1.4125 21 1 11.7381 -8.4048 0.5619 22 1 11.9604 -6.4202 -0.8139 23 6 7.5234 -5.3854 2.1111 24 6 6.1826 -4.6229 2.1612 25 1 6.1746 -3.9108 2.9865 26 8 5.0866 -5.5337 2.2669 27 6 2.1951 -1.1955 -0.0058 28 6 1.4417 -2.5005 -0.0115 29 1 -0.3634 -0.0001 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5137 32 1 1.6538 2.1325 0.0006 33 1 4.1136 2.1475 -0.0009 34 1 5.3612 0.0275 -0.0016 35 1 6.2539 -0.8908 1.5056 36 1 6.1061 -2.1478 2.7570 37 1 4.6708 -1.2270 2.2466 38 1 7.8701 -3.4024 -0.4597 39 1 7.9052 -2.6336 1.1556 40 1 9.9443 -7.7296 2.5856 41 1 7.3530 -6.4144 1.7942 42 1 7.9962 -5.3735 3.0931 43 1 5.0598 -6.0216 3.1013 44 1 1.2922 -2.8383 1.0140 45 1 0.4736 -2.3592 -0.4923 46 1 2.0142 -3.2483 -0.5605 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047614897.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:35 Heat of formation + Delta-G solvation = -23.669482 kcal Electronic energy + Delta-G solvation = -27402.776278 eV Core-core repulsion = 23679.404261 eV Total energy + Delta-G solvation = -3723.372017 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.59651 -39.00233 -37.64948 -35.26432 -34.84536 -33.50061 -32.42305 -31.70837 -28.79366 -27.81445 -27.38831 -26.80146 -26.30722 -24.58343 -23.23153 -20.99539 -20.49735 -20.34833 -18.97739 -17.34626 -17.08427 -16.67622 -16.16243 -15.97725 -15.82988 -14.84225 -14.56931 -14.33335 -14.29047 -13.99191 -13.67817 -13.30845 -13.05820 -12.95538 -12.87298 -12.69797 -12.66126 -12.44450 -12.29621 -11.99110 -11.96950 -11.72529 -11.64921 -11.39269 -11.23191 -11.06294 -10.91521 -10.78014 -10.19335 -9.93399 -9.85384 -9.62655 -9.26745 -8.90606 -8.72790 -8.67288 -8.35046 -6.93670 -5.80631 -3.12790 0.88973 1.17910 2.79588 3.09308 3.37646 3.44158 3.46362 3.60079 4.41965 4.48370 4.58851 4.67295 4.70898 4.80588 5.03072 5.08169 5.18412 5.23619 5.33650 5.35947 5.38753 5.47238 5.50064 5.58184 5.59270 5.64272 5.67501 5.74981 5.80434 5.86533 5.90950 6.04067 6.09622 6.17942 6.21001 6.27827 6.45692 6.48464 6.60523 6.76105 6.88261 7.31554 7.46428 7.56466 7.71952 8.14442 8.18213 8.31673 9.11682 9.72734 10.36258 11.31599 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.026692 B = 0.003060 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.736725 B = 9147.814643 C = 9598.966077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.097 4.097 3 C -0.101 4.101 4 C -0.129 4.129 5 C -0.089 4.089 6 C -0.120 4.120 7 C 0.562 3.438 8 O -0.529 6.529 9 N -0.594 5.594 10 C 0.076 3.924 11 C 0.133 3.867 12 H 0.116 0.884 13 C 0.132 3.868 14 N -0.599 5.599 15 C -0.233 4.233 16 H 0.081 0.919 17 C -0.004 4.004 18 N -0.918 5.918 19 Si 0.911 3.089 20 H -0.289 1.289 21 H -0.289 1.289 22 H -0.280 1.280 23 C 0.151 3.849 24 C 0.065 3.935 25 H 0.057 0.943 26 O -0.560 6.560 27 C -0.034 4.034 28 C -0.138 4.138 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.123 0.877 33 H 0.126 0.874 34 H 0.130 0.870 35 H 0.058 0.942 36 H 0.078 0.922 37 H 0.067 0.933 38 H 0.049 0.951 39 H 0.025 0.975 40 H 0.254 0.746 41 H 0.058 0.942 42 H 0.049 0.951 43 H 0.373 0.627 44 H 0.070 0.930 45 H 0.068 0.932 46 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.149 16.095 0.547 22.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.097 4.097 3 C -0.119 4.119 4 C -0.147 4.147 5 C -0.107 4.107 6 C -0.123 4.123 7 C 0.350 3.650 8 O -0.406 6.406 9 N -0.326 5.326 10 C -0.067 4.067 11 C 0.029 3.971 12 H 0.134 0.866 13 C 0.005 3.995 14 N -0.326 5.326 15 C -0.361 4.361 16 H 0.099 0.901 17 C -0.201 4.201 18 N -0.565 5.565 19 Si 0.741 3.259 20 H -0.216 1.216 21 H -0.215 1.215 22 H -0.205 1.205 23 C 0.026 3.974 24 C 0.005 3.995 25 H 0.075 0.925 26 O -0.364 6.364 27 C -0.035 4.035 28 C -0.194 4.194 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.141 0.859 33 H 0.144 0.856 34 H 0.147 0.853 35 H 0.077 0.923 36 H 0.096 0.904 37 H 0.086 0.914 38 H 0.067 0.933 39 H 0.042 0.958 40 H 0.064 0.936 41 H 0.077 0.923 42 H 0.067 0.933 43 H 0.220 0.780 44 H 0.089 0.911 45 H 0.087 0.913 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -16.278 15.664 -0.418 22.595 hybrid contribution 1.186 -0.433 0.414 1.329 sum -15.092 15.231 -0.004 21.442 Atomic orbital electron populations 1.20816 0.90943 1.02892 1.02436 1.19720 0.96207 0.92301 1.01450 1.21149 0.94299 0.97370 0.99096 1.21031 0.94178 0.97864 1.01623 1.21324 1.00196 0.91290 0.97915 1.19794 0.93639 0.93389 1.05479 1.18310 0.79426 0.86523 0.80735 1.90734 1.66067 1.44272 1.39511 1.47674 1.32403 1.21430 1.31063 1.21875 1.01479 0.91789 0.91588 1.22428 0.91309 0.84810 0.98508 0.86648 1.21772 0.88133 0.91588 0.98012 1.44231 1.13489 1.28390 1.46514 1.19040 0.88842 1.03640 1.24562 0.90122 1.24835 0.99184 0.97496 0.98543 1.69957 1.40351 1.18534 1.27619 0.86123 0.82579 0.78408 0.78800 1.21623 1.21507 1.20503 1.21846 0.85677 0.95520 0.94363 1.23561 0.88599 0.91165 0.96175 0.92526 1.86502 1.48805 1.58380 1.42751 1.19773 0.91873 0.95558 0.96264 1.21135 1.00325 0.94962 1.02987 0.91102 0.91114 0.91546 0.85884 0.85561 0.85259 0.92331 0.90355 0.91381 0.93310 0.95765 0.93598 0.92341 0.93332 0.78020 0.91134 0.91268 0.88565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.85 9.18 36.00 0.33 -0.52 16 2 C -0.10 -0.98 5.87 -104.68 -0.61 -1.60 16 3 C -0.10 -0.91 9.69 -39.49 -0.38 -1.29 16 4 C -0.13 -1.19 10.03 -39.64 -0.40 -1.59 16 5 C -0.09 -1.00 8.15 -39.18 -0.32 -1.32 16 6 C -0.12 -1.65 4.71 -104.96 -0.49 -2.14 16 7 C 0.56 9.51 6.72 -12.33 -0.08 9.43 16 8 O -0.53 -10.80 14.16 5.32 0.08 -10.72 16 9 N -0.59 -9.62 2.91 -172.60 -0.50 -10.12 16 10 C 0.08 0.94 7.90 59.85 0.47 1.41 16 11 C 0.13 2.60 3.18 -65.78 -0.21 2.39 16 12 H 0.12 2.62 7.02 -51.93 -0.36 2.25 16 13 C 0.13 2.77 6.83 -2.53 -0.02 2.75 16 14 N -0.60 -15.21 3.39 -170.07 -0.58 -15.79 16 15 C -0.23 -6.45 10.26 -15.06 -0.15 -6.61 16 16 H 0.08 2.15 7.85 -52.49 -0.41 1.74 16 17 C 0.00 -0.11 5.46 -17.43 -0.10 -0.20 16 18 N -0.92 -26.58 10.41 55.49 0.58 -26.00 16 19 Si 0.91 21.96 29.57 -169.99 -5.03 16.93 16 20 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 21 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 23 C 0.15 3.63 5.16 -3.06 -0.02 3.61 16 24 C 0.07 1.26 3.85 -24.89 -0.10 1.16 16 25 H 0.06 0.98 6.07 -51.92 -0.31 0.67 16 26 O -0.56 -10.46 13.39 -35.23 -0.47 -10.94 16 27 C -0.03 -0.43 5.91 -104.23 -0.62 -1.04 16 28 C -0.14 -1.70 8.81 36.00 0.32 -1.38 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.51 6.67 -51.93 -0.35 0.16 16 31 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 32 H 0.12 0.80 8.06 -52.49 -0.42 0.37 16 33 H 0.13 0.86 8.06 -52.48 -0.42 0.43 16 34 H 0.13 1.33 6.66 -52.49 -0.35 0.98 16 35 H 0.06 0.63 6.93 -51.93 -0.36 0.27 16 36 H 0.08 0.98 6.06 -51.93 -0.31 0.66 16 37 H 0.07 0.74 6.96 -51.93 -0.36 0.38 16 38 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.02 0.48 7.26 -51.93 -0.38 0.10 16 40 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 41 H 0.06 1.59 7.31 -51.93 -0.38 1.21 16 42 H 0.05 1.25 7.54 -51.93 -0.39 0.86 16 43 H 0.37 5.35 9.12 45.56 0.42 5.76 16 44 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.07 0.69 6.59 -51.93 -0.34 0.35 16 46 H 0.10 1.48 5.56 -51.93 -0.29 1.19 16 LS Contribution 361.39 15.07 5.45 5.45 Total: -1.00 -33.54 361.39 -8.71 -42.25 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: -5.85 Total: 5.87 kcal Atomic # 6 Polarization: 5.45 SS G_CDS: -2.37 Total: 3.07 kcal Atomic # 7 Polarization: -51.41 SS G_CDS: -0.50 Total: -51.91 kcal Atomic # 8 Polarization: -21.26 SS G_CDS: -0.40 Total: -21.66 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.03 Total: 16.93 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.54 -8.71 -42.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047614897.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.577 kcal (2) G-P(sol) polarization free energy of solvation -33.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds