Wall clock time and date at job start Tue Mar 31 2020 12:43:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38379 * 119.92792 * 2 1 4 4 C 1.38335 * 120.29227 * 180.02562 * 3 2 1 5 5 C 1.37979 * 120.14889 * 0.02562 * 4 3 2 6 6 C 1.39563 * 119.84823 * 359.97438 * 5 4 3 7 7 C 1.47849 * 120.14148 * 179.97438 * 6 5 4 8 8 O 1.21551 * 120.00004 * 229.03526 * 7 6 5 9 9 N 1.34778 * 119.99903 * 49.04354 * 7 6 5 10 10 C 1.46501 * 119.99889 * 5.49697 * 9 7 6 11 11 C 1.46503 * 119.99891 * 185.50232 * 9 7 6 12 12 H 1.08996 * 110.88412 * 357.56522 * 11 9 7 13 13 C 1.54901 * 111.00708 * 121.44861 * 11 9 7 14 14 N 1.47422 * 104.83306 * 155.07919 * 13 11 9 15 15 C 1.36939 * 125.64788 * 155.83485 * 14 13 11 16 16 H 1.07997 * 119.99972 * 5.43800 * 15 14 13 17 17 C 1.38817 * 119.99930 * 185.44389 * 15 14 13 18 18 N 1.31620 * 119.99879 * 349.38305 * 17 15 14 19 19 Si 1.86798 * 119.99992 * 169.38373 * 17 15 14 20 20 H 1.48511 * 109.46968 * 94.95463 * 19 17 15 21 21 H 1.48497 * 109.47378 * 214.95298 * 19 17 15 22 22 H 1.48506 * 109.47151 * 334.95786 * 19 17 15 23 23 C 1.47022 * 108.70500 * 335.87795 * 14 13 11 24 24 C 1.54326 * 107.27039 * 1.05410 * 23 14 13 25 25 H 1.09008 * 110.71740 * 263.83385 * 24 23 14 26 26 O 1.42898 * 110.72190 * 140.56205 * 24 23 14 27 27 C 1.37938 * 119.92581 * 180.27755 * 2 1 3 28 28 C 1.50695 * 120.07588 * 359.97438 * 27 2 1 29 29 H 1.09004 * 109.47239 * 90.00568 * 1 2 3 30 30 H 1.09003 * 109.47353 * 209.99858 * 1 2 3 31 31 H 1.08998 * 109.47120 * 330.00488 * 1 2 3 32 32 H 1.08001 * 119.85360 * 0.03735 * 3 2 1 33 33 H 1.08005 * 119.93285 * 179.97438 * 4 3 2 34 34 H 1.07999 * 120.07983 * 180.02562 * 5 4 3 35 35 H 1.09001 * 109.47015 * 275.34906 * 10 9 7 36 36 H 1.09001 * 109.46783 * 155.36017 * 10 9 7 37 37 H 1.08991 * 109.47155 * 35.35362 * 10 9 7 38 38 H 1.08999 * 110.36964 * 273.92376 * 13 11 9 39 39 H 1.09003 * 110.36531 * 36.13843 * 13 11 9 40 40 H 0.96995 * 120.00005 * 180.02562 * 18 17 15 41 41 H 1.08999 * 109.88639 * 120.47172 * 23 14 13 42 42 H 1.09004 * 109.87792 * 241.48522 * 23 14 13 43 43 H 0.96696 * 113.99817 * 66.47181 * 26 24 23 44 44 H 1.09005 * 109.47456 * 267.95388 * 28 27 2 45 45 H 1.09006 * 109.47363 * 27.95816 * 28 27 2 46 46 H 1.09005 * 109.47498 * 147.95601 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1993 0.0000 4 6 3.5807 1.2081 -0.0005 5 6 4.2812 0.0194 -0.0016 6 6 3.5911 -1.1937 -0.0016 7 6 4.3352 -2.4712 -0.0033 8 8 4.0439 -3.3432 -0.7984 9 7 5.3365 -2.6690 0.8769 10 6 5.6092 -1.6697 1.9128 11 6 6.1523 -3.8833 0.7976 12 1 5.7955 -4.5400 0.0042 13 6 7.6486 -3.5351 0.5993 14 7 8.3807 -4.6971 1.1351 15 6 9.6490 -5.0735 0.7815 16 1 10.2317 -4.4517 0.1180 17 6 10.1857 -6.2544 1.2759 18 7 9.5691 -6.9047 2.2399 19 14 11.7831 -6.9206 0.5731 20 1 12.9208 -6.4661 1.4125 21 1 11.7381 -8.4048 0.5619 22 1 11.9604 -6.4202 -0.8139 23 6 7.5234 -5.3854 2.1111 24 6 6.1826 -4.6229 2.1612 25 1 6.1746 -3.9108 2.9865 26 8 5.0866 -5.5337 2.2669 27 6 2.1951 -1.1955 -0.0058 28 6 1.4417 -2.5005 -0.0115 29 1 -0.3634 -0.0001 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5137 32 1 1.6538 2.1325 0.0006 33 1 4.1136 2.1475 -0.0009 34 1 5.3612 0.0275 -0.0016 35 1 6.2539 -0.8908 1.5056 36 1 6.1061 -2.1478 2.7570 37 1 4.6708 -1.2270 2.2466 38 1 7.8701 -3.4024 -0.4597 39 1 7.9052 -2.6336 1.1556 40 1 9.9443 -7.7296 2.5856 41 1 7.3530 -6.4144 1.7942 42 1 7.9962 -5.3735 3.0931 43 1 5.0598 -6.0216 3.1013 44 1 1.2922 -2.8383 1.0140 45 1 0.4736 -2.3592 -0.4923 46 1 2.0142 -3.2483 -0.5605 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047614897.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:34 Heat of formation + Delta-G solvation = -46.825209 kcal Electronic energy + Delta-G solvation = -27403.780385 eV Core-core repulsion = 23679.404261 eV Total energy + Delta-G solvation = -3724.376124 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.74085 -40.21766 -39.07727 -36.76871 -36.45365 -34.39991 -33.84949 -33.03675 -30.47335 -29.22100 -28.56345 -27.91098 -27.22893 -26.39655 -24.39542 -22.35427 -21.77305 -21.73363 -20.31385 -19.03006 -18.70450 -17.91462 -17.52933 -17.06807 -16.78755 -16.59443 -15.90429 -15.77943 -15.49376 -15.09680 -14.92063 -14.57078 -14.42688 -14.30854 -14.04599 -13.88342 -13.71090 -13.66831 -13.40408 -13.23650 -13.19696 -13.09981 -12.79187 -12.75155 -12.66884 -12.52857 -12.48188 -12.13574 -11.90991 -11.80756 -11.58734 -11.01683 -10.81425 -10.74805 -9.79945 -9.68720 -9.50250 -8.98514 -7.92735 -5.27411 0.01790 0.40251 1.44239 1.47419 1.56407 1.60178 1.83744 2.46203 2.75632 3.09518 3.28547 3.44344 3.56054 3.82380 3.85346 3.91003 3.97744 4.03571 4.11027 4.26831 4.27637 4.39095 4.41421 4.43619 4.58835 4.65362 4.68103 4.75245 4.77334 4.84218 4.86616 4.91563 4.97362 5.02047 5.18020 5.31350 5.33917 5.41701 5.43715 5.48290 5.50468 5.62231 5.65401 6.01908 6.09973 6.31016 6.81431 7.00733 7.04351 7.66609 8.30035 9.18109 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.026692 B = 0.003060 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.736725 B = 9147.814643 C = 9598.966077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.099 4.099 3 C -0.094 4.094 4 C -0.122 4.122 5 C -0.093 4.093 6 C -0.143 4.143 7 C 0.558 3.442 8 O -0.577 6.577 9 N -0.592 5.592 10 C 0.071 3.929 11 C 0.145 3.855 12 H 0.076 0.924 13 C 0.136 3.864 14 N -0.620 5.620 15 C -0.249 4.249 16 H 0.086 0.914 17 C -0.060 4.060 18 N -0.945 5.945 19 Si 0.977 3.023 20 H -0.281 1.281 21 H -0.294 1.294 22 H -0.270 1.270 23 C 0.163 3.837 24 C 0.084 3.916 25 H 0.089 0.911 26 O -0.571 6.571 27 C -0.055 4.055 28 C -0.133 4.133 29 H 0.078 0.922 30 H 0.069 0.931 31 H 0.087 0.913 32 H 0.157 0.843 33 H 0.158 0.842 34 H 0.136 0.864 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.086 0.914 38 H 0.042 0.958 39 H 0.052 0.948 40 H 0.249 0.751 41 H 0.016 0.984 42 H 0.027 0.973 43 H 0.392 0.608 44 H 0.070 0.930 45 H 0.089 0.911 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.050 19.755 0.933 26.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.099 4.099 3 C -0.112 4.112 4 C -0.140 4.140 5 C -0.111 4.111 6 C -0.146 4.146 7 C 0.348 3.652 8 O -0.457 6.457 9 N -0.322 5.322 10 C -0.070 4.070 11 C 0.040 3.960 12 H 0.094 0.906 13 C 0.010 3.990 14 N -0.348 5.348 15 C -0.377 4.377 16 H 0.104 0.896 17 C -0.254 4.254 18 N -0.593 5.593 19 Si 0.805 3.195 20 H -0.208 1.208 21 H -0.221 1.221 22 H -0.195 1.195 23 C 0.037 3.963 24 C 0.024 3.976 25 H 0.106 0.894 26 O -0.378 6.378 27 C -0.056 4.056 28 C -0.189 4.189 29 H 0.096 0.904 30 H 0.088 0.912 31 H 0.106 0.894 32 H 0.174 0.826 33 H 0.176 0.824 34 H 0.154 0.846 35 H 0.099 0.901 36 H 0.098 0.902 37 H 0.105 0.895 38 H 0.060 0.940 39 H 0.070 0.930 40 H 0.059 0.941 41 H 0.034 0.966 42 H 0.045 0.955 43 H 0.242 0.758 44 H 0.089 0.911 45 H 0.108 0.892 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -17.190 19.372 -0.010 25.899 hybrid contribution 1.389 -1.492 0.280 2.058 sum -15.801 17.880 0.270 23.863 Atomic orbital electron populations 1.20883 0.89053 1.03965 1.03203 1.20036 0.97652 0.91740 1.00431 1.21594 0.94469 0.98154 0.96936 1.21405 0.94538 0.98177 0.99849 1.21454 1.00677 0.91047 0.97951 1.19631 0.94014 0.92344 1.08589 1.18964 0.79147 0.87321 0.79777 1.90707 1.67363 1.46269 1.41407 1.47679 1.31753 1.20867 1.31942 1.22147 1.03046 0.91297 0.90549 1.21921 0.90851 0.85958 0.97305 0.90564 1.21859 0.88482 0.90998 0.97708 1.44492 1.13394 1.29755 1.47163 1.19428 0.89951 1.04017 1.24313 0.89588 1.25677 1.02734 0.97911 0.99035 1.70150 1.41877 1.18602 1.28702 0.85091 0.78888 0.77068 0.78440 1.20800 1.22099 1.19526 1.21590 0.87805 0.94168 0.92704 1.23334 0.86181 0.90974 0.97112 0.89385 1.86475 1.48081 1.58732 1.44557 1.19903 0.91655 0.96392 0.97660 1.21042 1.00816 0.94476 1.02612 0.90379 0.91229 0.89374 0.82557 0.82433 0.84574 0.90061 0.90203 0.89526 0.94007 0.93033 0.94136 0.96574 0.95498 0.75802 0.91135 0.89205 0.92246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.33 9.18 71.23 0.65 -0.68 16 2 C -0.10 -1.72 5.87 -19.90 -0.12 -1.83 16 3 C -0.09 -1.27 9.69 22.33 0.22 -1.06 16 4 C -0.12 -1.74 10.03 22.23 0.22 -1.52 16 5 C -0.09 -1.85 8.15 22.53 0.18 -1.67 16 6 C -0.14 -3.80 4.71 -20.09 -0.09 -3.89 16 7 C 0.56 19.27 6.72 86.79 0.58 19.85 16 8 O -0.58 -25.04 14.16 -3.87 -0.05 -25.10 16 9 N -0.59 -19.01 2.91 -818.25 -2.38 -21.39 16 10 C 0.07 1.59 7.90 127.77 1.01 2.60 16 11 C 0.15 5.80 3.18 46.38 0.15 5.95 16 12 H 0.08 3.68 7.02 -2.39 -0.02 3.66 16 13 C 0.14 5.72 6.83 86.85 0.59 6.31 16 14 N -0.62 -32.29 3.39 -691.99 -2.35 -34.64 16 15 C -0.25 -14.01 10.26 84.03 0.86 -13.15 16 16 H 0.09 4.61 7.85 -2.91 -0.02 4.59 16 17 C -0.06 -3.42 5.46 84.86 0.46 -2.95 16 18 N -0.95 -56.55 10.41 21.65 0.23 -56.32 16 19 Si 0.98 45.85 29.57 68.60 2.03 47.87 16 20 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 21 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 22 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 23 C 0.16 8.12 5.16 86.73 0.45 8.57 16 24 C 0.08 3.29 3.85 31.78 0.12 3.41 16 25 H 0.09 2.92 6.07 -2.38 -0.01 2.90 16 26 O -0.57 -21.75 13.39 -148.98 -1.99 -23.74 16 27 C -0.06 -1.34 5.91 -19.61 -0.12 -1.45 16 28 C -0.13 -3.34 8.81 71.23 0.63 -2.71 16 29 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.07 0.83 6.67 -2.39 -0.02 0.82 16 31 H 0.09 0.66 8.08 -2.39 -0.02 0.64 16 32 H 0.16 1.10 8.06 -2.91 -0.02 1.08 16 33 H 0.16 1.28 8.06 -2.91 -0.02 1.25 16 34 H 0.14 2.43 6.66 -2.91 -0.02 2.41 16 35 H 0.08 1.48 6.93 -2.39 -0.02 1.46 16 36 H 0.08 1.78 6.06 -2.39 -0.01 1.76 16 37 H 0.09 1.66 6.96 -2.39 -0.02 1.64 16 38 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 39 H 0.05 1.92 7.26 -2.39 -0.02 1.91 16 40 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 41 H 0.02 0.92 7.31 -2.39 -0.02 0.91 16 42 H 0.03 1.43 7.54 -2.38 -0.02 1.42 16 43 H 0.39 11.31 9.12 -74.06 -0.68 10.64 16 44 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 45 H 0.09 1.76 6.59 -2.38 -0.02 1.74 16 46 H 0.06 1.95 5.56 -2.38 -0.01 1.94 16 Total: -1.00 -77.20 361.39 1.61 -75.59 By element: Atomic # 1 Polarization: 21.61 SS G_CDS: 0.33 Total: 21.94 kcal Atomic # 6 Polarization: 9.97 SS G_CDS: 5.81 Total: 15.78 kcal Atomic # 7 Polarization: -107.84 SS G_CDS: -4.50 Total: -112.35 kcal Atomic # 8 Polarization: -46.79 SS G_CDS: -2.05 Total: -48.84 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.87 kcal Total: -77.20 1.61 -75.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047614897.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.761 kcal (2) G-P(sol) polarization free energy of solvation -77.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds