Wall clock time and date at job start Tue Mar 31 2020 12:09:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86792 * 120.00104 * 2 1 4 4 H 1.48498 * 109.47414 * 353.96441 * 3 2 1 5 5 H 1.48501 * 109.47227 * 113.96092 * 3 2 1 6 6 H 1.48505 * 109.47375 * 233.96179 * 3 2 1 7 7 C 1.38812 * 119.99647 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00125 * 33.12352 * 7 2 1 9 9 N 1.36940 * 119.99525 * 213.12927 * 7 2 1 10 10 C 1.47119 * 125.77159 * 352.62823 * 9 7 2 11 11 C 1.54595 * 107.24047 * 177.25772 * 10 9 7 12 12 C 1.54421 * 102.53577 * 338.70966 * 11 10 9 13 13 H 1.08996 * 110.71909 * 279.20735 * 12 11 10 14 14 C 1.48213 * 125.76207 * 172.93380 * 9 7 2 15 15 H 1.08999 * 111.53338 * 326.14338 * 14 9 7 16 16 C 1.53016 * 107.11430 * 89.14726 * 14 9 7 17 17 C 1.52729 * 110.80389 * 168.06971 * 16 14 9 18 18 C 1.53467 * 108.44187 * 296.22651 * 17 16 14 19 19 N 1.45123 * 111.60355 * 156.35348 * 12 11 10 20 20 C 1.34780 * 119.57605 * 111.37190 * 19 12 11 21 21 O 1.21280 * 120.00015 * 0.02562 * 20 19 12 22 22 C 1.50697 * 119.99894 * 179.97438 * 20 19 12 23 23 C 1.53007 * 109.46995 * 180.02562 * 22 20 19 24 24 C 1.50696 * 109.47093 * 180.02562 * 23 22 20 25 25 C 1.34512 * 125.79220 * 89.71701 * 24 23 22 26 26 C 1.41383 * 106.84345 * 179.88908 * 25 24 23 27 27 C 1.34518 * 106.83885 * 0.36772 * 26 25 24 28 28 O 1.34304 * 108.42008 * 359.77424 * 27 26 25 29 29 H 0.96998 * 120.00564 * 174.98692 * 1 2 3 30 30 H 1.08999 * 109.88275 * 296.81852 * 10 9 7 31 31 H 1.09008 * 109.88197 * 57.99052 * 10 9 7 32 32 H 1.08996 * 110.96473 * 220.34785 * 11 10 9 33 33 H 1.09006 * 110.74176 * 96.96274 * 11 10 9 34 34 H 1.09004 * 109.20692 * 288.40566 * 16 14 9 35 35 H 1.08998 * 109.20893 * 47.72287 * 16 14 9 36 36 H 1.08995 * 109.64317 * 176.53856 * 17 16 14 37 37 H 1.09001 * 109.82152 * 56.01370 * 17 16 14 38 38 H 1.09001 * 109.83068 * 298.56021 * 18 17 16 39 39 H 1.09000 * 109.83840 * 177.60010 * 18 17 16 40 40 H 1.08995 * 109.47266 * 300.00092 * 22 20 19 41 41 H 1.08999 * 109.47234 * 60.00792 * 22 20 19 42 42 H 1.09007 * 109.47105 * 300.00079 * 23 22 20 43 43 H 1.08993 * 109.47109 * 59.99735 * 23 22 20 44 44 H 1.07999 * 126.57970 * 0.02562 * 25 24 23 45 45 H 1.08001 * 126.58322 * 180.16414 * 26 25 24 46 46 H 1.07998 * 125.79276 * 179.79098 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6176 0.0000 4 1 1.2920 2.7425 -0.1472 5 1 2.9901 1.7620 1.2794 6 1 3.2110 1.6345 -1.1322 7 6 2.0101 -1.2022 -0.0005 8 1 1.6018 -2.0612 -0.5120 9 7 3.2126 -1.2988 0.6476 10 6 3.9569 -0.1821 1.2503 11 6 5.2134 -0.7796 1.9242 12 6 4.8157 -2.2584 2.1234 13 1 4.1923 -2.3740 3.0100 14 6 3.9871 -2.5453 0.8548 15 1 3.3318 -3.4053 0.9928 16 6 4.9066 -2.7109 -0.3570 17 6 5.9483 -3.7985 -0.1030 18 6 6.8457 -3.3496 1.0582 19 7 5.9818 -3.1166 2.2221 20 6 6.2752 -3.7077 3.3973 21 8 5.5664 -3.5212 4.3635 22 6 7.4834 -4.6012 3.5103 23 6 7.5869 -5.1408 4.9383 24 6 8.7954 -6.0339 5.0516 25 6 10.0369 -5.6388 5.3864 26 6 10.8519 -6.7940 5.3734 27 6 10.0614 -7.8247 5.0234 28 8 8.8169 -7.3583 4.8297 29 1 -0.4851 -0.8368 -0.0734 30 1 4.2501 0.5281 0.4772 31 1 3.3385 0.3149 1.9980 32 1 5.4080 -0.2984 2.8826 33 1 6.0798 -0.6966 1.2679 34 1 4.3084 -2.9833 -1.2265 35 1 5.4144 -1.7666 -0.5535 36 1 6.5528 -3.9432 -0.9984 37 1 5.4512 -4.7327 0.1582 38 1 7.3628 -2.4280 0.7911 39 1 7.5722 -4.1293 1.2871 40 1 7.3860 -5.4339 2.8138 41 1 8.3809 -4.0307 3.2713 42 1 7.6841 -4.3083 5.6352 43 1 6.6894 -5.7114 5.1770 44 1 10.3504 -4.6326 5.6224 45 1 11.9073 -6.8398 5.5979 46 1 10.3743 -8.8528 4.9165 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049333080.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:56 Heat of formation + Delta-G solvation = 15.849128 kcal Electronic energy + Delta-G solvation = -27154.379375 eV Core-core repulsion = 23432.721014 eV Total energy + Delta-G solvation = -3721.658361 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.81747 -40.55291 -38.34410 -35.51884 -34.31758 -33.05770 -32.57765 -32.36739 -29.82352 -28.96542 -28.59823 -25.42830 -24.38464 -23.59415 -22.06125 -22.01127 -21.04869 -20.58094 -19.72300 -18.31752 -17.84344 -17.35668 -16.98051 -16.33833 -15.88882 -15.72950 -15.29368 -14.71933 -14.24295 -14.09894 -13.90144 -13.82800 -13.52125 -13.10422 -13.07026 -12.92958 -12.79737 -12.61842 -12.45525 -12.22027 -12.13894 -11.75747 -11.43784 -11.34705 -11.15932 -11.02493 -10.63563 -10.46434 -10.24165 -10.19384 -9.89299 -9.72825 -9.66982 -9.10815 -8.71818 -8.46109 -8.27110 -7.08041 -6.38458 -3.11661 1.45126 2.33650 2.62836 2.70069 3.06949 3.43722 3.52775 3.71219 4.25324 4.60628 4.63076 4.65984 4.70173 4.76964 4.81115 4.92083 5.01721 5.05415 5.15924 5.20592 5.25106 5.31631 5.43168 5.45563 5.54460 5.56905 5.59888 5.68140 5.72982 5.81813 5.88172 5.90613 5.94724 6.03704 6.16756 6.23213 6.23784 6.42821 6.52924 6.58486 6.77562 6.82337 6.88306 6.92593 7.47320 7.70905 8.21043 8.33875 9.04350 9.61280 10.28618 11.12832 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.030728 B = 0.002751 C = 0.002708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.006299 B =10177.344587 C =10338.594244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C -0.015 4.015 3 Si 1.047 2.953 4 H -0.299 1.299 5 H -0.276 1.276 6 H -0.298 1.298 7 C -0.340 4.340 8 H 0.078 0.922 9 N -0.603 5.603 10 C 0.118 3.882 11 C -0.137 4.137 12 C 0.130 3.870 13 H 0.106 0.894 14 C 0.160 3.840 15 H 0.066 0.934 16 C -0.132 4.132 17 C -0.133 4.133 18 C 0.105 3.895 19 N -0.593 5.593 20 C 0.511 3.489 21 O -0.541 6.541 22 C -0.135 4.135 23 C -0.026 4.026 24 C -0.006 4.006 25 C -0.212 4.212 26 C -0.214 4.214 27 C -0.046 4.046 28 O -0.175 6.175 29 H 0.264 0.736 30 H 0.026 0.974 31 H 0.051 0.949 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.070 0.930 37 H 0.065 0.935 38 H 0.070 0.930 39 H 0.083 0.917 40 H 0.097 0.903 41 H 0.097 0.903 42 H 0.102 0.898 43 H 0.090 0.910 44 H 0.148 0.852 45 H 0.147 0.853 46 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.266 -12.555 6.545 27.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.216 4.216 3 Si 0.879 3.121 4 H -0.227 1.227 5 H -0.203 1.203 6 H -0.226 1.226 7 C -0.466 4.466 8 H 0.095 0.905 9 N -0.329 5.329 10 C -0.008 4.008 11 C -0.176 4.176 12 C 0.026 3.974 13 H 0.124 0.876 14 C 0.052 3.948 15 H 0.084 0.916 16 C -0.172 4.172 17 C -0.172 4.172 18 C -0.018 4.018 19 N -0.325 5.325 20 C 0.299 3.701 21 O -0.418 6.418 22 C -0.175 4.175 23 C -0.063 4.063 24 C -0.056 4.056 25 C -0.231 4.231 26 C -0.233 4.233 27 C -0.114 4.114 28 O -0.072 6.072 29 H 0.074 0.926 30 H 0.044 0.956 31 H 0.069 0.931 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.088 0.912 39 H 0.101 0.899 40 H 0.115 0.885 41 H 0.115 0.885 42 H 0.121 0.879 43 H 0.109 0.891 44 H 0.166 0.834 45 H 0.165 0.835 46 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 22.292 -10.939 6.972 25.792 hybrid contribution 0.686 -1.598 -0.425 1.790 sum 22.978 -12.537 6.547 26.982 Atomic orbital electron populations 1.70950 1.06071 1.30205 1.47430 1.25621 0.95856 1.01029 0.99137 0.84218 0.74593 0.76433 0.76845 1.22664 1.20264 1.22609 1.19870 0.93693 0.99353 1.33723 0.90456 1.45049 1.21831 1.00449 1.65605 1.21963 0.91376 0.91728 0.95686 1.22817 0.98542 0.95619 1.00590 1.21759 0.85998 0.88872 1.00818 0.87595 1.21349 0.91304 0.91198 0.90991 0.91600 1.22124 0.96978 0.97660 1.00426 1.21923 0.98096 0.99804 0.97405 1.21886 0.92733 1.01164 0.86011 1.47606 1.27440 1.47436 1.10038 1.20549 0.86396 0.80437 0.82707 1.90712 1.51515 1.62698 1.36917 1.21695 0.97634 0.99907 0.98307 1.19876 0.93154 0.96473 0.96827 1.22510 0.97502 0.81486 1.04099 1.21633 0.92686 1.00329 1.08475 1.21845 1.01155 0.92705 1.07614 1.24032 0.81634 1.00066 1.05622 1.84041 1.31614 1.22765 1.68733 0.92600 0.95638 0.93124 0.91254 0.91520 0.91954 0.92030 0.91180 0.91631 0.91160 0.89860 0.88494 0.88472 0.87927 0.89112 0.83442 0.83545 0.78220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.33 13.70 55.49 0.76 -27.57 16 2 C -0.01 -0.43 5.45 -17.43 -0.09 -0.52 16 3 Si 1.05 26.18 24.97 -169.99 -4.24 21.93 16 4 H -0.30 -7.68 7.11 56.52 0.40 -7.27 16 5 H -0.28 -6.31 5.03 56.52 0.28 -6.03 16 6 H -0.30 -7.21 7.11 56.52 0.40 -6.81 16 7 C -0.34 -9.61 10.42 -15.06 -0.16 -9.77 16 8 H 0.08 2.31 8.06 -52.49 -0.42 1.88 16 9 N -0.60 -14.54 2.90 -162.17 -0.47 -15.01 16 10 C 0.12 2.56 4.38 -2.87 -0.01 2.55 16 11 C -0.14 -2.36 6.07 -25.15 -0.15 -2.51 16 12 C 0.13 2.27 3.11 -67.29 -0.21 2.07 16 13 H 0.11 2.13 6.96 -51.93 -0.36 1.76 16 14 C 0.16 3.14 3.60 -66.35 -0.24 2.90 16 15 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 16 C -0.13 -2.17 5.10 -26.86 -0.14 -2.31 16 17 C -0.13 -1.58 6.11 -26.63 -0.16 -1.74 16 18 C 0.10 1.10 6.05 -3.64 -0.02 1.08 16 19 N -0.59 -8.17 2.73 -165.01 -0.45 -8.62 16 20 C 0.51 6.95 7.66 -10.99 -0.08 6.86 16 21 O -0.54 -9.43 15.31 5.56 0.09 -9.34 16 22 C -0.14 -1.26 4.00 -27.88 -0.11 -1.38 16 23 C -0.03 -0.25 5.04 -27.88 -0.14 -0.39 16 24 C -0.01 -0.06 6.57 -35.63 -0.23 -0.29 16 25 C -0.21 -1.90 10.81 -39.70 -0.43 -2.32 16 26 C -0.21 -1.71 10.91 -39.70 -0.43 -2.14 16 27 C -0.05 -0.36 12.09 29.42 0.36 0.00 16 28 O -0.18 -1.79 10.65 5.70 0.06 -1.73 16 29 H 0.26 8.15 8.73 -40.82 -0.36 7.80 16 30 H 0.03 0.57 5.33 -51.93 -0.28 0.30 16 31 H 0.05 1.19 6.15 -51.92 -0.32 0.87 16 32 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.07 1.02 6.81 -51.93 -0.35 0.67 16 34 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.06 1.05 7.12 -51.93 -0.37 0.68 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.07 0.70 7.52 -51.93 -0.39 0.31 16 39 H 0.08 0.64 5.82 -51.93 -0.30 0.33 16 40 H 0.10 0.80 7.61 -51.93 -0.40 0.41 16 41 H 0.10 0.73 7.93 -51.93 -0.41 0.32 16 42 H 0.10 0.99 8.10 -51.92 -0.42 0.56 16 43 H 0.09 0.97 8.10 -51.93 -0.42 0.55 16 44 H 0.15 1.09 8.06 -52.49 -0.42 0.67 16 45 H 0.15 0.85 8.06 -52.49 -0.42 0.43 16 46 H 0.20 0.80 8.06 -52.49 -0.42 0.38 16 LS Contribution 355.98 15.07 5.36 5.36 Total: -1.00 -33.84 355.98 -8.26 -42.10 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -7.10 Total: 0.79 kcal Atomic # 6 Polarization: -5.65 SS G_CDS: -2.26 Total: -7.91 kcal Atomic # 7 Polarization: -51.04 SS G_CDS: -0.16 Total: -51.21 kcal Atomic # 8 Polarization: -11.22 SS G_CDS: 0.15 Total: -11.07 kcal Atomic # 14 Polarization: 26.18 SS G_CDS: -4.24 Total: 21.93 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -33.84 -8.26 -42.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049333080.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.949 kcal (2) G-P(sol) polarization free energy of solvation -33.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.100 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds