Wall clock time and date at job start Tue Mar 31 2020 12:09:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86792 * 120.00104 * 2 1 4 4 H 1.48498 * 109.47414 * 353.96441 * 3 2 1 5 5 H 1.48501 * 109.47227 * 113.96092 * 3 2 1 6 6 H 1.48505 * 109.47375 * 233.96179 * 3 2 1 7 7 C 1.38812 * 119.99647 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00125 * 33.12352 * 7 2 1 9 9 N 1.36940 * 119.99525 * 213.12927 * 7 2 1 10 10 C 1.47119 * 125.77159 * 352.62823 * 9 7 2 11 11 C 1.54595 * 107.24047 * 177.25772 * 10 9 7 12 12 C 1.54421 * 102.53577 * 338.70966 * 11 10 9 13 13 H 1.08996 * 110.71909 * 279.20735 * 12 11 10 14 14 C 1.48213 * 125.76207 * 172.93380 * 9 7 2 15 15 H 1.08999 * 111.53338 * 326.14338 * 14 9 7 16 16 C 1.53016 * 107.11430 * 89.14726 * 14 9 7 17 17 C 1.52729 * 110.80389 * 168.06971 * 16 14 9 18 18 C 1.53467 * 108.44187 * 296.22651 * 17 16 14 19 19 N 1.45123 * 111.60355 * 156.35348 * 12 11 10 20 20 C 1.34780 * 119.57605 * 111.37190 * 19 12 11 21 21 O 1.21280 * 120.00015 * 0.02562 * 20 19 12 22 22 C 1.50697 * 119.99894 * 179.97438 * 20 19 12 23 23 C 1.53007 * 109.46995 * 180.02562 * 22 20 19 24 24 C 1.50696 * 109.47093 * 180.02562 * 23 22 20 25 25 C 1.34512 * 125.79220 * 89.71701 * 24 23 22 26 26 C 1.41383 * 106.84345 * 179.88908 * 25 24 23 27 27 C 1.34518 * 106.83885 * 0.36772 * 26 25 24 28 28 O 1.34304 * 108.42008 * 359.77424 * 27 26 25 29 29 H 0.96998 * 120.00564 * 174.98692 * 1 2 3 30 30 H 1.08999 * 109.88275 * 296.81852 * 10 9 7 31 31 H 1.09008 * 109.88197 * 57.99052 * 10 9 7 32 32 H 1.08996 * 110.96473 * 220.34785 * 11 10 9 33 33 H 1.09006 * 110.74176 * 96.96274 * 11 10 9 34 34 H 1.09004 * 109.20692 * 288.40566 * 16 14 9 35 35 H 1.08998 * 109.20893 * 47.72287 * 16 14 9 36 36 H 1.08995 * 109.64317 * 176.53856 * 17 16 14 37 37 H 1.09001 * 109.82152 * 56.01370 * 17 16 14 38 38 H 1.09001 * 109.83068 * 298.56021 * 18 17 16 39 39 H 1.09000 * 109.83840 * 177.60010 * 18 17 16 40 40 H 1.08995 * 109.47266 * 300.00092 * 22 20 19 41 41 H 1.08999 * 109.47234 * 60.00792 * 22 20 19 42 42 H 1.09007 * 109.47105 * 300.00079 * 23 22 20 43 43 H 1.08993 * 109.47109 * 59.99735 * 23 22 20 44 44 H 1.07999 * 126.57970 * 0.02562 * 25 24 23 45 45 H 1.08001 * 126.58322 * 180.16414 * 26 25 24 46 46 H 1.07998 * 125.79276 * 179.79098 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6176 0.0000 4 1 1.2920 2.7425 -0.1472 5 1 2.9901 1.7620 1.2794 6 1 3.2110 1.6345 -1.1322 7 6 2.0101 -1.2022 -0.0005 8 1 1.6018 -2.0612 -0.5120 9 7 3.2126 -1.2988 0.6476 10 6 3.9569 -0.1821 1.2503 11 6 5.2134 -0.7796 1.9242 12 6 4.8157 -2.2584 2.1234 13 1 4.1923 -2.3740 3.0100 14 6 3.9871 -2.5453 0.8548 15 1 3.3318 -3.4053 0.9928 16 6 4.9066 -2.7109 -0.3570 17 6 5.9483 -3.7985 -0.1030 18 6 6.8457 -3.3496 1.0582 19 7 5.9818 -3.1166 2.2221 20 6 6.2752 -3.7077 3.3973 21 8 5.5664 -3.5212 4.3635 22 6 7.4834 -4.6012 3.5103 23 6 7.5869 -5.1408 4.9383 24 6 8.7954 -6.0339 5.0516 25 6 10.0369 -5.6388 5.3864 26 6 10.8519 -6.7940 5.3734 27 6 10.0614 -7.8247 5.0234 28 8 8.8169 -7.3583 4.8297 29 1 -0.4851 -0.8368 -0.0734 30 1 4.2501 0.5281 0.4772 31 1 3.3385 0.3149 1.9980 32 1 5.4080 -0.2984 2.8826 33 1 6.0798 -0.6966 1.2679 34 1 4.3084 -2.9833 -1.2265 35 1 5.4144 -1.7666 -0.5535 36 1 6.5528 -3.9432 -0.9984 37 1 5.4512 -4.7327 0.1582 38 1 7.3628 -2.4280 0.7911 39 1 7.5722 -4.1293 1.2871 40 1 7.3860 -5.4339 2.8138 41 1 8.3809 -4.0307 3.2713 42 1 7.6841 -4.3083 5.6352 43 1 6.6894 -5.7114 5.1770 44 1 10.3504 -4.6326 5.6224 45 1 11.9073 -6.8398 5.5979 46 1 10.3743 -8.8528 4.9165 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049333080.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:56 Heat of formation + Delta-G solvation = -6.128528 kcal Electronic energy + Delta-G solvation = -27155.332398 eV Core-core repulsion = 23432.721014 eV Total energy + Delta-G solvation = -3722.611384 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.43830 -41.77166 -39.70028 -36.91677 -35.14661 -34.42634 -33.78372 -33.64971 -31.38129 -30.32368 -29.58599 -26.54129 -25.78192 -25.02280 -23.29399 -22.61902 -22.58696 -21.44355 -20.94486 -19.77612 -19.15140 -18.66963 -17.81950 -17.38554 -17.02512 -16.74592 -16.66453 -15.79705 -15.77073 -15.37459 -15.15782 -15.06528 -14.76133 -14.48135 -14.28224 -13.86467 -13.73305 -13.67447 -13.46116 -13.40298 -13.15018 -13.07044 -12.99291 -12.63696 -12.39383 -12.09849 -12.05540 -11.98614 -11.87086 -11.71070 -11.27132 -11.02673 -10.83232 -10.76162 -10.49735 -9.62954 -9.33469 -9.11059 -8.71952 -5.36184 0.83073 1.42625 1.50847 1.58745 1.70319 1.74060 1.91433 2.20927 2.54917 2.96778 3.30449 3.43965 3.71350 3.77884 3.88075 3.96498 4.02016 4.04254 4.08654 4.15816 4.21265 4.21503 4.36505 4.39970 4.48673 4.52545 4.61949 4.74899 4.76147 4.78572 4.81831 4.92379 4.98151 5.02034 5.02428 5.11853 5.12431 5.20061 5.29595 5.31647 5.45248 5.55703 5.64354 5.67681 6.07780 6.27531 6.41711 6.82011 7.15184 7.48140 8.15097 8.80954 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.030728 B = 0.002751 C = 0.002708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.006299 B =10177.344587 C =10338.594244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.075 4.075 3 Si 1.088 2.912 4 H -0.310 1.310 5 H -0.241 1.241 6 H -0.280 1.280 7 C -0.327 4.327 8 H 0.044 0.956 9 N -0.626 5.626 10 C 0.110 3.890 11 C -0.120 4.120 12 C 0.144 3.856 13 H 0.070 0.930 14 C 0.153 3.847 15 H 0.036 0.964 16 C -0.122 4.122 17 C -0.125 4.125 18 C 0.102 3.898 19 N -0.593 5.593 20 C 0.508 3.492 21 O -0.587 6.587 22 C -0.121 4.121 23 C -0.021 4.021 24 C -0.025 4.025 25 C -0.214 4.214 26 C -0.226 4.226 27 C -0.046 4.046 28 O -0.196 6.196 29 H 0.248 0.752 30 H 0.032 0.968 31 H 0.029 0.971 32 H 0.084 0.916 33 H 0.098 0.902 34 H 0.037 0.963 35 H 0.064 0.936 36 H 0.104 0.896 37 H 0.061 0.939 38 H 0.090 0.910 39 H 0.125 0.875 40 H 0.115 0.885 41 H 0.129 0.871 42 H 0.099 0.901 43 H 0.071 0.929 44 H 0.160 0.840 45 H 0.167 0.833 46 H 0.233 0.767 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.571 -13.030 6.561 32.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.269 4.269 3 Si 0.914 3.086 4 H -0.239 1.239 5 H -0.166 1.166 6 H -0.207 1.207 7 C -0.455 4.455 8 H 0.062 0.938 9 N -0.352 5.352 10 C -0.015 4.015 11 C -0.159 4.159 12 C 0.038 3.962 13 H 0.089 0.911 14 C 0.045 3.955 15 H 0.054 0.946 16 C -0.161 4.161 17 C -0.164 4.164 18 C -0.019 4.019 19 N -0.324 5.324 20 C 0.299 3.701 21 O -0.468 6.468 22 C -0.161 4.161 23 C -0.059 4.059 24 C -0.075 4.075 25 C -0.233 4.233 26 C -0.245 4.245 27 C -0.113 4.113 28 O -0.093 6.093 29 H 0.057 0.943 30 H 0.050 0.950 31 H 0.047 0.953 32 H 0.102 0.898 33 H 0.117 0.883 34 H 0.056 0.944 35 H 0.082 0.918 36 H 0.122 0.878 37 H 0.080 0.920 38 H 0.108 0.892 39 H 0.143 0.857 40 H 0.133 0.867 41 H 0.147 0.853 42 H 0.117 0.883 43 H 0.090 0.910 44 H 0.178 0.822 45 H 0.184 0.816 46 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 27.674 -11.467 6.985 30.759 hybrid contribution -0.988 -1.640 -0.409 1.958 sum 26.686 -13.107 6.577 30.450 Atomic orbital electron populations 1.71077 1.07320 1.29252 1.51089 1.26966 0.95883 1.04648 0.99445 0.83735 0.73864 0.72005 0.78975 1.23881 1.16589 1.20737 1.19730 0.95399 0.97981 1.32384 0.93842 1.45074 1.21664 1.03204 1.65267 1.22050 0.92779 0.91373 0.95291 1.22751 0.97196 0.94494 1.01473 1.21221 0.87085 0.90215 0.97719 0.91128 1.21534 0.91501 0.88468 0.93953 0.94591 1.21918 0.97227 0.99705 0.97288 1.21895 0.97215 0.97562 0.99714 1.22238 0.92316 1.03577 0.83730 1.47659 1.26483 1.46716 1.11516 1.21348 0.86994 0.80028 0.81754 1.90702 1.53313 1.64159 1.38595 1.21692 0.96264 0.99674 0.98430 1.19751 0.92645 0.96278 0.97226 1.22449 0.97628 0.81571 1.05816 1.21920 0.92533 1.01331 1.07541 1.22183 1.02235 0.92389 1.07719 1.24763 0.80692 1.01547 1.04295 1.84029 1.32951 1.23027 1.69245 0.94304 0.95000 0.95285 0.89763 0.88334 0.94375 0.91777 0.87810 0.92026 0.89189 0.85715 0.86664 0.85307 0.88253 0.91017 0.82217 0.81561 0.75093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -62.00 13.70 21.65 0.30 -61.70 16 2 C -0.07 -4.53 5.45 84.86 0.46 -4.07 16 3 Si 1.09 53.36 24.97 68.60 1.71 55.07 16 4 H -0.31 -15.72 7.11 99.48 0.71 -15.01 16 5 H -0.24 -10.46 5.03 99.48 0.50 -9.96 16 6 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 7 C -0.33 -19.36 10.42 84.03 0.88 -18.49 16 8 H 0.04 2.79 8.06 -2.91 -0.02 2.77 16 9 N -0.63 -30.77 2.90 -666.98 -1.94 -32.70 16 10 C 0.11 4.66 4.38 86.80 0.38 5.04 16 11 C -0.12 -3.84 6.07 31.62 0.19 -3.64 16 12 C 0.14 4.91 3.11 46.14 0.14 5.05 16 13 H 0.07 2.92 6.96 -2.39 -0.02 2.90 16 14 C 0.15 6.07 3.60 45.08 0.16 6.23 16 15 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 16 C -0.12 -3.83 5.10 30.51 0.16 -3.68 16 17 C -0.13 -2.50 6.11 30.66 0.19 -2.31 16 18 C 0.10 1.62 6.05 86.48 0.52 2.14 16 19 N -0.59 -14.65 2.73 -794.37 -2.17 -16.82 16 20 C 0.51 12.73 7.66 87.66 0.67 13.40 16 21 O -0.59 -20.40 15.31 -3.03 -0.05 -20.45 16 22 C -0.12 -1.83 4.00 29.85 0.12 -1.71 16 23 C -0.02 -0.38 5.04 29.85 0.15 -0.23 16 24 C -0.02 -0.43 6.57 24.83 0.16 -0.27 16 25 C -0.21 -3.22 10.81 22.19 0.24 -2.98 16 26 C -0.23 -2.90 10.91 22.19 0.24 -2.66 16 27 C -0.05 -0.58 12.09 66.97 0.81 0.23 16 28 O -0.20 -3.57 10.65 -2.53 -0.03 -3.60 16 29 H 0.25 16.38 8.73 -92.71 -0.81 15.57 16 30 H 0.03 1.34 5.33 -2.39 -0.01 1.33 16 31 H 0.03 1.35 6.15 -2.38 -0.01 1.34 16 32 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 33 H 0.10 2.54 6.81 -2.38 -0.02 2.53 16 34 H 0.04 1.36 8.14 -2.38 -0.02 1.34 16 35 H 0.06 2.00 7.12 -2.39 -0.02 1.98 16 36 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.09 1.19 7.52 -2.39 -0.02 1.17 16 39 H 0.12 1.05 5.82 -2.39 -0.01 1.04 16 40 H 0.12 1.39 7.61 -2.39 -0.02 1.37 16 41 H 0.13 1.21 7.93 -2.39 -0.02 1.19 16 42 H 0.10 1.79 8.10 -2.38 -0.02 1.78 16 43 H 0.07 1.52 8.10 -2.39 -0.02 1.50 16 44 H 0.16 1.88 8.06 -2.91 -0.02 1.85 16 45 H 0.17 1.34 8.06 -2.91 -0.02 1.32 16 46 H 0.23 1.04 8.06 -2.91 -0.02 1.01 16 Total: -1.00 -80.50 355.98 4.03 -76.47 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: 0.73 Total: 11.68 kcal Atomic # 6 Polarization: -13.42 SS G_CDS: 5.48 Total: -7.94 kcal Atomic # 7 Polarization: -107.41 SS G_CDS: -3.81 Total: -111.22 kcal Atomic # 8 Polarization: -23.98 SS G_CDS: -0.07 Total: -24.05 kcal Atomic # 14 Polarization: 53.36 SS G_CDS: 1.71 Total: 55.07 kcal Total: -80.50 4.03 -76.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049333080.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.340 kcal (2) G-P(sol) polarization free energy of solvation -80.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds