Wall clock time and date at job start Tue Mar 31 2020 12:25:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 120.00545 * 2 1 4 4 H 1.48502 * 109.47150 * 270.00092 * 3 2 1 5 5 H 1.48495 * 109.47199 * 29.99686 * 3 2 1 6 6 H 1.48500 * 109.47283 * 150.00108 * 3 2 1 7 7 C 1.38819 * 119.99461 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99521 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00202 * 0.02562 * 7 2 1 10 10 C 1.46885 * 125.57945 * 0.02562 * 9 7 2 11 11 C 1.54057 * 107.70489 * 177.00699 * 10 9 7 12 12 C 1.54572 * 103.67117 * 342.84477 * 11 10 9 13 13 H 1.08999 * 108.78917 * 273.79254 * 12 11 10 14 14 C 1.47652 * 125.58065 * 180.02562 * 9 7 2 15 15 H 1.08993 * 110.57204 * 322.60849 * 14 9 7 16 16 C 1.52920 * 107.99121 * 83.63233 * 14 9 7 17 17 C 1.52945 * 109.79501 * 171.83900 * 16 14 9 18 18 C 1.53051 * 108.49356 * 294.00794 * 17 16 14 19 19 N 1.44190 * 111.47742 * 153.28251 * 12 11 10 20 20 C 1.34781 * 117.75690 * 93.66288 * 19 12 11 21 21 O 1.21278 * 120.00156 * 359.73480 * 20 19 12 22 22 C 1.50699 * 119.99708 * 179.73680 * 20 19 12 23 23 C 1.53005 * 109.46913 * 180.02562 * 22 20 19 24 24 C 1.50699 * 109.46913 * 179.97438 * 23 22 20 25 25 C 1.41385 * 126.58199 * 90.00453 * 24 23 22 26 26 C 1.34512 * 106.83926 * 180.18893 * 25 24 23 27 27 O 1.34305 * 108.42433 * 359.63135 * 26 25 24 28 28 C 1.34305 * 109.47225 * 0.37505 * 27 26 25 29 29 H 0.97001 * 119.99490 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.80684 * 296.55434 * 10 9 7 31 31 H 1.08992 * 109.81130 * 57.39084 * 10 9 7 32 32 H 1.09003 * 110.56931 * 101.43115 * 11 10 9 33 33 H 1.08997 * 110.56981 * 224.15290 * 11 10 9 34 34 H 1.09007 * 109.42016 * 51.74127 * 16 14 9 35 35 H 1.09000 * 109.41710 * 291.93868 * 16 14 9 36 36 H 1.09000 * 109.63343 * 174.30685 * 17 16 14 37 37 H 1.09001 * 109.79248 * 53.80575 * 17 16 14 38 38 H 1.08995 * 109.45971 * 293.77193 * 18 17 16 39 39 H 1.09001 * 109.45477 * 173.82334 * 18 17 16 40 40 H 1.08992 * 109.47567 * 60.00331 * 22 20 19 41 41 H 1.08999 * 109.47149 * 299.99933 * 22 20 19 42 42 H 1.09004 * 109.47242 * 59.99969 * 23 22 20 43 43 H 1.08999 * 109.47011 * 299.99837 * 23 22 20 44 44 H 1.08002 * 126.57514 * 359.91727 * 25 24 23 45 45 H 1.07998 * 125.78467 * 179.77218 * 26 25 24 46 46 H 1.08000 * 125.78555 * 179.79179 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4479 2.6526 0.6999 6 1 3.5479 1.4400 0.7000 7 6 2.0102 -1.2023 0.0005 8 1 3.0902 -1.2023 0.0001 9 7 1.3254 -2.3882 0.0005 10 6 -0.1365 -2.5309 -0.0005 11 6 -0.4603 -4.0351 -0.0767 12 6 0.8640 -4.6699 -0.5588 13 1 0.8926 -4.6380 -1.6479 14 6 1.9357 -3.7326 0.0016 15 1 2.8328 -3.7465 -0.6173 16 6 2.2767 -4.0954 1.4475 17 6 2.7233 -5.5562 1.5235 18 6 1.5311 -6.4475 1.1672 19 7 0.9837 -6.0384 -0.1206 20 6 0.5652 -7.0055 -0.9609 21 8 0.1024 -6.7106 -2.0424 22 6 0.6725 -8.4533 -0.5566 23 6 0.1329 -9.3384 -1.6820 24 6 0.2408 -10.7862 -1.2779 25 6 -0.7367 -11.5452 -0.5943 26 6 -0.2291 -12.7806 -0.4343 27 8 0.9938 -12.8121 -0.9888 28 6 1.2851 -11.6046 -1.4994 29 1 -0.4849 0.8401 -0.0004 30 1 -0.5494 -2.1101 0.9163 31 1 -0.5572 -2.0172 -0.8649 32 1 -0.7343 -4.4182 0.9063 33 1 -1.2597 -4.2189 -0.7946 34 1 1.3964 -3.9525 2.0743 35 1 3.0814 -3.4516 1.8025 36 1 3.0615 -5.7837 2.5344 37 1 3.5352 -5.7312 0.8176 38 1 0.7637 -6.3514 1.9352 39 1 1.8584 -7.4856 1.1092 40 1 0.0903 -8.6217 0.3493 41 1 1.7170 -8.7016 -0.3686 42 1 0.7155 -9.1700 -2.5878 43 1 -0.9116 -9.0902 -1.8704 44 1 -1.7034 -11.1983 -0.2603 45 1 -0.7222 -13.6075 0.0549 46 1 2.2023 -11.3362 -2.0026 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049408451.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:10 Heat of formation + Delta-G solvation = -15.406903 kcal Electronic energy + Delta-G solvation = -27021.073657 eV Core-core repulsion = 23298.059933 eV Total energy + Delta-G solvation = -3723.013724 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.37684 -41.75248 -39.50998 -36.86904 -35.80335 -34.24466 -33.87889 -32.39447 -30.94634 -30.16013 -29.66522 -26.76624 -26.01743 -25.10638 -23.25047 -22.40285 -22.12416 -21.40825 -20.79475 -19.42707 -18.77949 -18.62171 -17.83424 -17.00788 -16.81130 -16.74431 -16.63864 -16.03228 -15.51431 -15.31140 -15.09187 -14.93805 -14.87693 -14.28522 -14.08970 -13.80903 -13.62038 -13.56016 -13.32939 -13.11752 -13.06296 -12.89502 -12.81682 -12.62918 -12.33951 -12.26012 -12.05513 -11.94231 -11.80438 -11.61791 -11.56181 -11.19076 -10.77985 -10.71455 -10.47987 -9.58524 -9.36668 -8.92388 -7.85311 -5.22199 0.94541 1.44659 1.47149 1.55504 1.64848 1.69360 2.05427 2.39567 2.49318 3.32058 3.46410 3.60553 3.84286 3.90228 3.96656 4.02066 4.03828 4.12800 4.16067 4.23830 4.31930 4.35710 4.44263 4.58621 4.59530 4.65670 4.70975 4.84305 4.86391 4.88052 4.92803 4.97496 5.07109 5.16922 5.21123 5.28821 5.36650 5.40771 5.41350 5.54687 5.62161 5.65837 5.71755 5.72143 6.17675 6.28627 6.44799 7.07524 7.22553 7.74650 8.39062 9.24736 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.034341 B = 0.002576 C = 0.002502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.167261 B =10866.582171 C =11188.454464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.068 4.068 3 Si 0.980 3.020 4 H -0.288 1.288 5 H -0.295 1.295 6 H -0.265 1.265 7 C -0.235 4.235 8 H 0.085 0.915 9 N -0.616 5.616 10 C 0.192 3.808 11 C -0.134 4.134 12 C 0.154 3.846 13 H 0.061 0.939 14 C 0.156 3.844 15 H 0.048 0.952 16 C -0.121 4.121 17 C -0.122 4.122 18 C 0.103 3.897 19 N -0.589 5.589 20 C 0.499 3.501 21 O -0.588 6.588 22 C -0.118 4.118 23 C -0.030 4.030 24 C -0.192 4.192 25 C -0.228 4.228 26 C -0.041 4.041 27 O -0.191 6.191 28 C -0.043 4.043 29 H 0.246 0.754 30 H 0.008 0.992 31 H 0.010 0.990 32 H 0.073 0.927 33 H 0.058 0.942 34 H 0.047 0.953 35 H 0.050 0.950 36 H 0.104 0.896 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.123 0.877 40 H 0.114 0.886 41 H 0.122 0.878 42 H 0.069 0.931 43 H 0.061 0.939 44 H 0.154 0.846 45 H 0.232 0.768 46 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.419 -26.852 4.184 27.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.261 4.261 3 Si 0.808 3.192 4 H -0.215 1.215 5 H -0.222 1.222 6 H -0.190 1.190 7 C -0.364 4.364 8 H 0.103 0.897 9 N -0.341 5.341 10 C 0.066 3.934 11 C -0.174 4.174 12 C 0.048 3.952 13 H 0.079 0.921 14 C 0.049 3.951 15 H 0.066 0.934 16 C -0.161 4.161 17 C -0.160 4.160 18 C -0.019 4.019 19 N -0.320 5.320 20 C 0.289 3.711 21 O -0.468 6.468 22 C -0.157 4.157 23 C -0.068 4.068 24 C -0.193 4.193 25 C -0.247 4.247 26 C -0.108 4.108 27 O -0.087 6.087 28 C -0.110 4.110 29 H 0.055 0.945 30 H 0.027 0.973 31 H 0.028 0.972 32 H 0.092 0.908 33 H 0.077 0.923 34 H 0.065 0.935 35 H 0.069 0.931 36 H 0.122 0.878 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.141 0.859 40 H 0.132 0.868 41 H 0.140 0.860 42 H 0.088 0.912 43 H 0.080 0.920 44 H 0.172 0.828 45 H 0.249 0.751 46 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 3.341 -26.692 3.650 27.147 hybrid contribution -0.333 2.017 -0.280 2.063 sum 3.009 -24.675 3.371 25.085 Atomic orbital electron populations 1.70207 1.06412 1.25234 1.58381 1.25685 0.96593 1.01123 1.02712 0.85055 0.77734 0.79032 0.77373 1.21541 1.22165 1.19007 1.19410 0.90970 0.83308 1.42716 0.89748 1.44776 1.01858 1.00752 1.86741 1.20706 0.84295 0.90650 0.97723 1.22867 0.97401 0.96166 1.00932 1.20599 0.94898 0.81587 0.98166 0.92068 1.21053 0.93813 0.84284 0.95917 0.93435 1.21911 1.00472 0.97059 0.96660 1.21811 0.97532 0.92928 1.03724 1.21890 0.96119 1.00571 0.83273 1.47190 1.61747 1.04493 1.18538 1.21636 0.76487 0.89434 0.83496 1.90683 1.46885 1.84666 1.24607 1.21708 1.05532 0.87491 1.01016 1.19567 1.01844 0.88101 0.97265 1.20501 0.95998 0.97171 1.05619 1.22025 1.02159 0.94671 1.05844 1.24643 0.84038 1.00501 1.01601 1.84087 1.32851 1.33661 1.58054 1.24355 1.01699 0.81982 1.02938 0.94466 0.97331 0.97205 0.90830 0.92277 0.93460 0.93136 0.87752 0.91002 0.90863 0.85898 0.86760 0.85976 0.91246 0.92017 0.82799 0.75146 0.76015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.84 10.29 21.65 0.22 -58.62 16 2 C -0.07 -3.96 5.49 84.86 0.47 -3.50 16 3 Si 0.98 46.44 29.55 68.60 2.03 48.47 16 4 H -0.29 -13.54 7.11 99.48 0.71 -12.84 16 5 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 6 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 7 C -0.24 -13.27 10.27 84.03 0.86 -12.41 16 8 H 0.08 4.52 7.83 -2.91 -0.02 4.50 16 9 N -0.62 -32.17 2.93 -672.40 -1.97 -34.14 16 10 C 0.19 10.03 5.39 86.66 0.47 10.49 16 11 C -0.13 -5.53 6.46 31.49 0.20 -5.33 16 12 C 0.15 5.85 2.76 45.96 0.13 5.97 16 13 H 0.06 2.70 7.08 -2.39 -0.02 2.68 16 14 C 0.16 6.39 3.27 44.75 0.15 6.54 16 15 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 16 C -0.12 -4.02 5.31 30.55 0.16 -3.86 16 17 C -0.12 -2.56 6.10 30.59 0.19 -2.37 16 18 C 0.10 1.93 6.06 86.53 0.52 2.45 16 19 N -0.59 -16.48 2.79 -801.78 -2.24 -18.72 16 20 C 0.50 13.82 7.59 87.66 0.66 14.49 16 21 O -0.59 -22.02 15.25 -3.02 -0.05 -22.07 16 22 C -0.12 -1.99 4.01 29.85 0.12 -1.87 16 23 C -0.03 -0.57 5.02 29.85 0.15 -0.42 16 24 C -0.19 -3.15 5.42 -19.94 -0.11 -3.26 16 25 C -0.23 -3.38 10.87 22.19 0.24 -3.14 16 26 C -0.04 -0.50 12.09 66.97 0.81 0.31 16 27 O -0.19 -2.91 10.65 -2.52 -0.03 -2.94 16 28 C -0.04 -0.60 12.01 66.97 0.80 0.20 16 29 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 30 H 0.01 0.49 7.60 -2.39 -0.02 0.47 16 31 H 0.01 0.58 7.24 -2.39 -0.02 0.56 16 32 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 33 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 34 H 0.05 1.70 8.02 -2.38 -0.02 1.69 16 35 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.12 1.33 5.82 -2.39 -0.01 1.31 16 40 H 0.11 1.52 8.03 -2.39 -0.02 1.50 16 41 H 0.12 1.39 7.32 -2.39 -0.02 1.38 16 42 H 0.07 1.43 8.10 -2.39 -0.02 1.41 16 43 H 0.06 1.40 8.10 -2.39 -0.02 1.38 16 44 H 0.15 1.96 8.06 -2.91 -0.02 1.93 16 45 H 0.23 0.98 8.06 -2.91 -0.02 0.95 16 46 H 0.22 1.83 8.06 -2.91 -0.02 1.81 16 Total: -1.00 -76.92 365.52 4.75 -72.16 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: 0.96 Total: 11.53 kcal Atomic # 6 Polarization: -1.51 SS G_CDS: 5.83 Total: 4.31 kcal Atomic # 7 Polarization: -107.49 SS G_CDS: -3.99 Total: -111.48 kcal Atomic # 8 Polarization: -24.93 SS G_CDS: -0.07 Total: -25.01 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 2.03 Total: 48.47 kcal Total: -76.92 4.75 -72.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049408451.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.757 kcal (2) G-P(sol) polarization free energy of solvation -76.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds