Wall clock time and date at job start Tue Mar 31 2020 12:25:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86803 * 119.99791 * 2 1 4 4 H 1.48494 * 109.47102 * 240.00440 * 3 2 1 5 5 H 1.48489 * 109.47125 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.46772 * 120.00703 * 3 2 1 7 7 C 1.38808 * 119.99868 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00098 * 179.97438 * 7 2 1 9 9 N 1.36941 * 120.00163 * 359.97438 * 7 2 1 10 10 C 1.47117 * 125.76482 * 359.97134 * 9 7 2 11 11 C 1.54567 * 107.25062 * 182.62423 * 10 9 7 12 12 C 1.54415 * 102.45140 * 21.67098 * 11 10 9 13 13 H 1.08997 * 110.71968 * 80.56221 * 12 11 10 14 14 C 1.48208 * 125.76786 * 180.02562 * 9 7 2 15 15 H 1.09002 * 112.30387 * 33.42507 * 14 9 7 16 16 C 1.53007 * 107.11214 * 270.83343 * 14 9 7 17 17 C 1.52745 * 110.80048 * 191.92646 * 16 14 9 18 18 C 1.53034 * 108.52531 * 63.65344 * 17 16 14 19 19 N 1.45122 * 111.60699 * 203.42521 * 12 11 10 20 20 C 1.34778 * 119.57224 * 248.62882 * 19 12 11 21 21 O 1.21273 * 120.00276 * 0.02562 * 20 19 12 22 22 C 1.50708 * 119.99823 * 180.02562 * 20 19 12 23 23 C 1.52999 * 109.47312 * 180.02562 * 22 20 19 24 24 C 1.50696 * 109.47311 * 179.97438 * 23 22 20 25 25 C 1.41388 * 126.57799 * 89.99880 * 24 23 22 26 26 C 1.34515 * 106.83843 * 180.02562 * 25 24 23 27 27 O 1.34304 * 108.42331 * 0.02562 * 26 25 24 28 28 C 1.34305 * 109.47208 * 359.97438 * 27 26 25 29 29 H 0.97007 * 120.00140 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.88725 * 302.03497 * 10 9 7 31 31 H 1.09003 * 109.88371 * 63.06029 * 10 9 7 32 32 H 1.09004 * 110.81150 * 263.42778 * 11 10 9 33 33 H 1.09000 * 110.81103 * 139.91172 * 11 10 9 34 34 H 1.09004 * 109.21017 * 312.26240 * 16 14 9 35 35 H 1.08997 * 109.21670 * 71.58464 * 16 14 9 36 36 H 1.08998 * 109.63789 * 183.45628 * 17 16 14 37 37 H 1.09000 * 109.64081 * 303.87223 * 17 16 14 38 38 H 1.08989 * 109.77308 * 182.52691 * 18 17 16 39 39 H 1.09002 * 109.67924 * 61.70576 * 18 17 16 40 40 H 1.09001 * 109.46917 * 59.99889 * 22 20 19 41 41 H 1.08999 * 109.46943 * 300.00087 * 22 20 19 42 42 H 1.08997 * 109.46605 * 59.99707 * 23 22 20 43 43 H 1.09005 * 109.46901 * 300.00275 * 23 22 20 44 44 H 1.08001 * 126.57691 * 0.26428 * 25 24 23 45 45 H 1.07998 * 125.78442 * 180.02562 * 26 25 24 46 46 H 1.08005 * 125.78108 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6963 1.2124 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1382 -2.5359 0.0006 11 6 -0.4461 -4.0491 0.0677 12 6 0.8587 -4.6285 0.6562 13 1 0.8823 -4.5035 1.7387 14 6 1.9338 -3.7396 -0.0005 15 1 2.8711 -3.7713 0.5550 16 6 2.1380 -4.1414 -1.4627 17 6 2.4839 -5.6250 -1.5743 18 6 1.2931 -6.4414 -1.0670 19 7 1.0227 -6.0295 0.3153 20 6 0.9315 -6.9644 1.2818 21 8 0.7132 -6.6326 2.4277 22 6 1.1008 -8.4221 0.9386 23 6 0.9512 -9.2653 2.2065 24 6 1.1198 -10.7229 1.8632 25 6 2.3306 -11.4530 1.8594 26 6 2.0257 -12.7115 1.4951 27 8 0.7020 -12.7818 1.2788 28 6 0.1476 -11.5788 1.5007 29 1 -0.4851 0.8401 0.0004 30 1 -0.5610 -2.0326 0.8701 31 1 -0.5545 -2.1106 -0.9127 32 1 -0.6337 -4.4507 -0.9281 33 1 -1.2896 -4.2436 0.7301 34 1 1.2224 -3.9437 -2.0202 35 1 2.9500 -3.5509 -1.8870 36 1 2.6852 -5.8768 -2.6155 37 1 3.3632 -5.8427 -0.9681 38 1 1.5353 -7.5036 -1.0957 39 1 0.4204 -6.2432 -1.6893 40 1 2.0902 -8.5819 0.5101 41 1 0.3399 -8.7158 0.2155 42 1 -0.0384 -9.1053 2.6344 43 1 1.7118 -8.9716 2.9300 44 1 3.3115 -11.0740 2.1058 45 1 2.7264 -13.5270 1.3939 46 1 -0.9012 -11.3394 1.4045 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049408453.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:14 Heat of formation + Delta-G solvation = 5.092540 kcal Electronic energy + Delta-G solvation = -27024.602153 eV Core-core repulsion = 23302.477351 eV Total energy + Delta-G solvation = -3722.124802 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.77710 -40.35650 -38.10193 -35.26662 -35.00178 -32.39040 -32.34168 -31.52141 -29.55856 -28.88017 -28.18675 -25.49007 -24.26531 -23.89207 -21.97795 -21.82939 -20.59963 -20.11746 -19.68853 -18.09265 -17.78879 -16.87895 -16.84779 -16.18706 -15.65856 -15.51444 -14.89034 -14.75282 -14.33762 -14.09595 -13.77562 -13.75829 -13.40615 -13.04816 -12.95984 -12.61881 -12.48548 -12.32681 -12.08781 -12.01652 -11.85301 -11.34833 -11.07735 -11.02072 -10.97034 -10.77540 -10.63008 -10.47616 -10.10634 -10.07472 -9.91645 -9.63313 -9.60133 -9.44307 -8.77258 -8.61326 -8.24820 -6.85540 -5.70380 -3.04581 1.52313 2.33781 2.80017 2.90741 3.22913 3.41299 3.45660 3.46757 4.44441 4.49465 4.56500 4.73004 4.89159 4.92969 5.05276 5.06908 5.17019 5.29755 5.36987 5.42022 5.49042 5.51486 5.54624 5.61156 5.66360 5.74286 5.83808 5.88250 5.97791 6.01284 6.04779 6.11969 6.22657 6.29395 6.31556 6.37305 6.51965 6.60895 6.75067 6.87519 7.00215 7.07426 7.55450 7.60764 7.66549 7.83127 8.24181 8.39520 9.21191 9.80926 10.47022 11.40774 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.032899 B = 0.002574 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.874641 B =10874.698688 C =11065.935881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.007 4.007 3 Si 0.912 3.088 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.227 4.227 8 H 0.077 0.923 9 N -0.598 5.598 10 C 0.181 3.819 11 C -0.151 4.151 12 C 0.129 3.871 13 H 0.101 0.899 14 C 0.156 3.844 15 H 0.058 0.942 16 C -0.130 4.130 17 C -0.134 4.134 18 C 0.106 3.894 19 N -0.593 5.593 20 C 0.508 3.492 21 O -0.544 6.544 22 C -0.132 4.132 23 C -0.036 4.036 24 C -0.176 4.176 25 C -0.208 4.208 26 C -0.046 4.046 27 O -0.180 6.180 28 C -0.042 4.042 29 H 0.253 0.747 30 H 0.051 0.949 31 H 0.041 0.959 32 H 0.058 0.942 33 H 0.060 0.940 34 H 0.063 0.937 35 H 0.059 0.941 36 H 0.068 0.932 37 H 0.063 0.937 38 H 0.081 0.919 39 H 0.069 0.931 40 H 0.092 0.908 41 H 0.091 0.909 42 H 0.079 0.921 43 H 0.080 0.920 44 H 0.148 0.852 45 H 0.200 0.800 46 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.266 -23.762 -1.752 23.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.204 4.204 3 Si 0.743 3.257 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.355 4.355 8 H 0.095 0.905 9 N -0.322 5.322 10 C 0.056 3.944 11 C -0.190 4.190 12 C 0.025 3.975 13 H 0.119 0.881 14 C 0.047 3.953 15 H 0.076 0.924 16 C -0.170 4.170 17 C -0.173 4.173 18 C -0.016 4.016 19 N -0.325 5.325 20 C 0.296 3.704 21 O -0.422 6.422 22 C -0.172 4.172 23 C -0.074 4.074 24 C -0.177 4.177 25 C -0.227 4.227 26 C -0.113 4.113 27 O -0.075 6.075 28 C -0.109 4.109 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.060 0.940 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.087 0.913 37 H 0.081 0.919 38 H 0.099 0.901 39 H 0.087 0.913 40 H 0.111 0.889 41 H 0.109 0.891 42 H 0.097 0.903 43 H 0.099 0.901 44 H 0.165 0.835 45 H 0.217 0.783 46 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 1.915 -23.542 -1.230 23.652 hybrid contribution 0.628 1.118 -0.184 1.295 sum 2.543 -22.424 -1.414 22.612 Atomic orbital electron populations 1.69948 1.04864 1.25164 1.56916 1.24796 0.95709 0.97617 1.02237 0.86198 0.78444 0.83237 0.77869 1.21220 1.21631 1.21173 1.18986 0.90377 0.82237 1.43912 0.90518 1.44691 1.01477 0.99272 1.86776 1.21173 0.84260 0.87786 1.01223 1.23098 0.96478 0.99755 0.99680 1.21772 0.96472 0.78197 1.01045 0.88112 1.21330 0.94570 0.86206 0.93155 0.92378 1.22117 1.01918 0.93069 0.99872 1.21856 0.97484 0.97250 1.00675 1.21740 0.98550 0.98800 0.82548 1.47647 1.70039 1.06868 1.07966 1.20684 0.76653 0.87942 0.85150 1.90691 1.48973 1.82497 1.20037 1.21673 1.04111 0.91689 0.99711 1.19711 1.03994 0.87191 0.96456 1.20541 0.93132 0.97484 1.06530 1.21809 0.99616 0.93944 1.07351 1.24012 0.82447 0.99496 1.05343 1.84067 1.21376 1.33441 1.68653 1.23921 0.99336 0.82200 1.05475 0.93689 0.93088 0.94049 0.92328 0.92109 0.91868 0.92186 0.91350 0.91874 0.90087 0.91317 0.88936 0.89098 0.90270 0.90118 0.83467 0.78282 0.78196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.03 10.33 55.49 0.57 -26.46 16 2 C -0.01 -0.21 5.49 -17.43 -0.10 -0.30 16 3 Si 0.91 22.13 29.55 -169.99 -5.02 17.11 16 4 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 7 C -0.23 -6.25 10.29 -15.06 -0.16 -6.40 16 8 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 9 N -0.60 -14.97 2.91 -162.21 -0.47 -15.45 16 10 C 0.18 4.38 5.19 -2.88 -0.01 4.37 16 11 C -0.15 -2.91 6.08 -25.17 -0.15 -3.06 16 12 C 0.13 2.43 3.10 -67.31 -0.21 2.22 16 13 H 0.10 2.17 6.96 -51.93 -0.36 1.81 16 14 C 0.16 3.17 3.60 -66.36 -0.24 2.93 16 15 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 16 C -0.13 -2.23 5.10 -26.86 -0.14 -2.37 16 17 C -0.13 -1.69 6.09 -26.84 -0.16 -1.85 16 18 C 0.11 1.24 6.02 -3.89 -0.02 1.22 16 19 N -0.59 -8.88 2.74 -165.34 -0.45 -9.34 16 20 C 0.51 7.50 7.66 -10.98 -0.08 7.42 16 21 O -0.54 -10.20 15.31 5.56 0.09 -10.11 16 22 C -0.13 -1.35 4.00 -27.88 -0.11 -1.46 16 23 C -0.04 -0.37 5.02 -27.89 -0.14 -0.51 16 24 C -0.18 -1.65 5.42 -104.75 -0.57 -2.22 16 25 C -0.21 -1.79 10.87 -39.70 -0.43 -2.22 16 26 C -0.05 -0.34 12.09 29.42 0.36 0.01 16 27 O -0.18 -1.63 10.65 5.70 0.06 -1.57 16 28 C -0.04 -0.36 12.01 29.41 0.35 0.00 16 29 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 30 H 0.05 1.39 7.30 -51.93 -0.38 1.01 16 31 H 0.04 1.10 7.59 -51.93 -0.39 0.70 16 32 H 0.06 1.04 6.83 -51.93 -0.35 0.68 16 33 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.06 1.17 7.12 -51.93 -0.37 0.80 16 35 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.08 0.70 5.81 -51.93 -0.30 0.40 16 39 H 0.07 0.79 7.54 -51.93 -0.39 0.39 16 40 H 0.09 0.83 7.60 -51.93 -0.39 0.44 16 41 H 0.09 0.78 7.94 -51.93 -0.41 0.36 16 42 H 0.08 0.86 8.10 -51.93 -0.42 0.44 16 43 H 0.08 0.93 8.10 -51.93 -0.42 0.51 16 44 H 0.15 1.08 8.06 -52.49 -0.42 0.66 16 45 H 0.20 0.78 8.06 -52.49 -0.42 0.36 16 46 H 0.20 1.15 8.06 -52.48 -0.42 0.72 16 LS Contribution 362.75 15.07 5.47 5.47 Total: -1.00 -32.80 362.75 -8.71 -41.50 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -7.13 Total: 1.08 kcal Atomic # 6 Polarization: -0.42 SS G_CDS: -1.82 Total: -2.24 kcal Atomic # 7 Polarization: -50.89 SS G_CDS: -0.35 Total: -51.24 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: 0.15 Total: -11.68 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.80 -8.71 -41.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049408453.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.595 kcal (2) G-P(sol) polarization free energy of solvation -32.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds