Wall clock time and date at job start Tue Mar 31 2020 12:25:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86803 * 119.99791 * 2 1 4 4 H 1.48494 * 109.47102 * 240.00440 * 3 2 1 5 5 H 1.48489 * 109.47125 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.46772 * 120.00703 * 3 2 1 7 7 C 1.38808 * 119.99868 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00098 * 179.97438 * 7 2 1 9 9 N 1.36941 * 120.00163 * 359.97438 * 7 2 1 10 10 C 1.47117 * 125.76482 * 359.97134 * 9 7 2 11 11 C 1.54567 * 107.25062 * 182.62423 * 10 9 7 12 12 C 1.54415 * 102.45140 * 21.67098 * 11 10 9 13 13 H 1.08997 * 110.71968 * 80.56221 * 12 11 10 14 14 C 1.48208 * 125.76786 * 180.02562 * 9 7 2 15 15 H 1.09002 * 112.30387 * 33.42507 * 14 9 7 16 16 C 1.53007 * 107.11214 * 270.83343 * 14 9 7 17 17 C 1.52745 * 110.80048 * 191.92646 * 16 14 9 18 18 C 1.53034 * 108.52531 * 63.65344 * 17 16 14 19 19 N 1.45122 * 111.60699 * 203.42521 * 12 11 10 20 20 C 1.34778 * 119.57224 * 248.62882 * 19 12 11 21 21 O 1.21273 * 120.00276 * 0.02562 * 20 19 12 22 22 C 1.50708 * 119.99823 * 180.02562 * 20 19 12 23 23 C 1.52999 * 109.47312 * 180.02562 * 22 20 19 24 24 C 1.50696 * 109.47311 * 179.97438 * 23 22 20 25 25 C 1.41388 * 126.57799 * 89.99880 * 24 23 22 26 26 C 1.34515 * 106.83843 * 180.02562 * 25 24 23 27 27 O 1.34304 * 108.42331 * 0.02562 * 26 25 24 28 28 C 1.34305 * 109.47208 * 359.97438 * 27 26 25 29 29 H 0.97007 * 120.00140 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.88725 * 302.03497 * 10 9 7 31 31 H 1.09003 * 109.88371 * 63.06029 * 10 9 7 32 32 H 1.09004 * 110.81150 * 263.42778 * 11 10 9 33 33 H 1.09000 * 110.81103 * 139.91172 * 11 10 9 34 34 H 1.09004 * 109.21017 * 312.26240 * 16 14 9 35 35 H 1.08997 * 109.21670 * 71.58464 * 16 14 9 36 36 H 1.08998 * 109.63789 * 183.45628 * 17 16 14 37 37 H 1.09000 * 109.64081 * 303.87223 * 17 16 14 38 38 H 1.08989 * 109.77308 * 182.52691 * 18 17 16 39 39 H 1.09002 * 109.67924 * 61.70576 * 18 17 16 40 40 H 1.09001 * 109.46917 * 59.99889 * 22 20 19 41 41 H 1.08999 * 109.46943 * 300.00087 * 22 20 19 42 42 H 1.08997 * 109.46605 * 59.99707 * 23 22 20 43 43 H 1.09005 * 109.46901 * 300.00275 * 23 22 20 44 44 H 1.08001 * 126.57691 * 0.26428 * 25 24 23 45 45 H 1.07998 * 125.78442 * 180.02562 * 26 25 24 46 46 H 1.08005 * 125.78108 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6963 1.2124 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1382 -2.5359 0.0006 11 6 -0.4461 -4.0491 0.0677 12 6 0.8587 -4.6285 0.6562 13 1 0.8823 -4.5035 1.7387 14 6 1.9338 -3.7396 -0.0005 15 1 2.8711 -3.7713 0.5550 16 6 2.1380 -4.1414 -1.4627 17 6 2.4839 -5.6250 -1.5743 18 6 1.2931 -6.4414 -1.0670 19 7 1.0227 -6.0295 0.3153 20 6 0.9315 -6.9644 1.2818 21 8 0.7132 -6.6326 2.4277 22 6 1.1008 -8.4221 0.9386 23 6 0.9512 -9.2653 2.2065 24 6 1.1198 -10.7229 1.8632 25 6 2.3306 -11.4530 1.8594 26 6 2.0257 -12.7115 1.4951 27 8 0.7020 -12.7818 1.2788 28 6 0.1476 -11.5788 1.5007 29 1 -0.4851 0.8401 0.0004 30 1 -0.5610 -2.0326 0.8701 31 1 -0.5545 -2.1106 -0.9127 32 1 -0.6337 -4.4507 -0.9281 33 1 -1.2896 -4.2436 0.7301 34 1 1.2224 -3.9437 -2.0202 35 1 2.9500 -3.5509 -1.8870 36 1 2.6852 -5.8768 -2.6155 37 1 3.3632 -5.8427 -0.9681 38 1 1.5353 -7.5036 -1.0957 39 1 0.4204 -6.2432 -1.6893 40 1 2.0902 -8.5819 0.5101 41 1 0.3399 -8.7158 0.2155 42 1 -0.0384 -9.1053 2.6344 43 1 1.7118 -8.9716 2.9300 44 1 3.3115 -11.0740 2.1058 45 1 2.7264 -13.5270 1.3939 46 1 -0.9012 -11.3394 1.4045 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049408453.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:13 Heat of formation + Delta-G solvation = -14.385527 kcal Electronic energy + Delta-G solvation = -27025.446785 eV Core-core repulsion = 23302.477351 eV Total energy + Delta-G solvation = -3722.969434 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.37742 -41.67030 -39.54839 -36.77538 -35.79064 -34.19290 -33.70560 -32.37689 -30.92052 -30.11874 -29.60242 -26.81361 -25.95539 -25.08573 -23.26176 -22.40176 -22.00637 -21.43704 -20.79498 -19.43539 -18.76946 -18.60198 -17.83005 -16.99060 -16.79383 -16.68290 -16.63721 -16.04892 -15.48945 -15.22156 -15.14154 -15.00426 -14.74757 -14.24141 -14.07930 -13.77272 -13.60062 -13.53981 -13.32737 -13.08675 -13.08349 -12.89570 -12.78643 -12.57698 -12.32712 -12.26983 -12.10938 -11.92195 -11.83686 -11.63733 -11.52715 -11.18379 -10.78827 -10.71371 -10.47939 -9.57864 -9.36804 -8.90259 -7.85030 -5.21056 0.94470 1.44049 1.47674 1.53734 1.65535 1.69246 2.05061 2.39508 2.49442 3.32397 3.48895 3.57604 3.87684 3.93045 3.96954 4.02974 4.07175 4.14861 4.15591 4.24267 4.33203 4.37347 4.43682 4.58627 4.59434 4.66638 4.71784 4.83112 4.86119 4.88318 4.92206 4.99011 5.09113 5.16623 5.20693 5.28703 5.37605 5.39675 5.40794 5.55898 5.63578 5.65149 5.67844 5.73050 6.17333 6.28606 6.49735 7.07845 7.22551 7.74345 8.39970 9.24830 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.032899 B = 0.002574 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.874641 B =10874.698688 C =11065.935881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.067 4.067 3 Si 0.978 3.022 4 H -0.274 1.274 5 H -0.295 1.295 6 H -0.280 1.280 7 C -0.237 4.237 8 H 0.081 0.919 9 N -0.619 5.619 10 C 0.192 3.808 11 C -0.132 4.132 12 C 0.145 3.855 13 H 0.065 0.935 14 C 0.150 3.850 15 H 0.047 0.953 16 C -0.119 4.119 17 C -0.124 4.124 18 C 0.103 3.897 19 N -0.593 5.593 20 C 0.504 3.496 21 O -0.592 6.592 22 C -0.118 4.118 23 C -0.030 4.030 24 C -0.191 4.191 25 C -0.227 4.227 26 C -0.041 4.041 27 O -0.191 6.191 28 C -0.043 4.043 29 H 0.246 0.754 30 H 0.008 0.992 31 H 0.012 0.988 32 H 0.083 0.917 33 H 0.065 0.935 34 H 0.050 0.950 35 H 0.045 0.955 36 H 0.103 0.897 37 H 0.067 0.933 38 H 0.125 0.875 39 H 0.079 0.921 40 H 0.116 0.884 41 H 0.120 0.880 42 H 0.068 0.932 43 H 0.061 0.939 44 H 0.155 0.845 45 H 0.232 0.768 46 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.407 -26.952 -3.553 27.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.260 4.260 3 Si 0.807 3.193 4 H -0.200 1.200 5 H -0.221 1.221 6 H -0.206 1.206 7 C -0.366 4.366 8 H 0.099 0.901 9 N -0.344 5.344 10 C 0.066 3.934 11 C -0.171 4.171 12 C 0.039 3.961 13 H 0.084 0.916 14 C 0.043 3.957 15 H 0.065 0.935 16 C -0.159 4.159 17 C -0.162 4.162 18 C -0.018 4.018 19 N -0.324 5.324 20 C 0.294 3.706 21 O -0.473 6.473 22 C -0.157 4.157 23 C -0.068 4.068 24 C -0.193 4.193 25 C -0.247 4.247 26 C -0.108 4.108 27 O -0.087 6.087 28 C -0.110 4.110 29 H 0.056 0.944 30 H 0.026 0.974 31 H 0.030 0.970 32 H 0.102 0.898 33 H 0.083 0.917 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.121 0.879 37 H 0.086 0.914 38 H 0.143 0.857 39 H 0.097 0.903 40 H 0.134 0.866 41 H 0.138 0.862 42 H 0.087 0.913 43 H 0.080 0.920 44 H 0.173 0.827 45 H 0.249 0.751 46 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 3.092 -26.792 -3.061 27.143 hybrid contribution 0.312 2.064 0.434 2.132 sum 3.404 -24.728 -2.627 25.099 Atomic orbital electron populations 1.70175 1.06285 1.25308 1.58339 1.25644 0.96603 1.00973 1.02753 0.85154 0.77126 0.78866 0.78203 1.20022 1.22108 1.20610 1.19362 0.90868 0.83549 1.42839 0.90141 1.44955 1.02005 1.00619 1.86793 1.20850 0.83985 0.90778 0.97768 1.22897 0.96961 0.96019 1.01238 1.21214 0.95298 0.80839 0.98747 0.91627 1.21539 0.94222 0.84406 0.95501 0.93524 1.21901 1.00875 0.96736 0.96401 1.21822 0.98060 0.93284 1.03076 1.22093 0.98538 1.01059 0.80156 1.47695 1.69965 1.04874 1.09860 1.21576 0.75130 0.89634 0.84217 1.90680 1.50946 1.83445 1.22202 1.21687 1.06303 0.87507 1.00209 1.19561 1.02774 0.88189 0.96237 1.20498 0.94034 0.96939 1.07805 1.22025 0.99847 0.94553 1.08225 1.24649 0.82228 1.00079 1.03828 1.84087 1.22160 1.33667 1.68749 1.24347 1.00206 0.81805 1.04649 0.94430 0.97371 0.96994 0.89829 0.91662 0.93076 0.93566 0.87911 0.91423 0.85661 0.90257 0.86599 0.86170 0.91318 0.92000 0.82743 0.75130 0.76073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.48 10.33 21.65 0.22 -58.26 16 2 C -0.07 -3.88 5.49 84.86 0.47 -3.42 16 3 Si 0.98 46.65 29.55 68.60 2.03 48.68 16 4 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 5 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 6 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 7 C -0.24 -13.50 10.29 84.03 0.86 -12.63 16 8 H 0.08 4.38 7.83 -2.91 -0.02 4.36 16 9 N -0.62 -32.24 2.91 -667.11 -1.94 -34.19 16 10 C 0.19 9.80 5.19 86.79 0.45 10.25 16 11 C -0.13 -5.14 6.08 31.61 0.19 -4.95 16 12 C 0.15 5.49 3.10 46.13 0.14 5.64 16 13 H 0.07 2.96 6.96 -2.39 -0.02 2.94 16 14 C 0.15 6.19 3.60 45.07 0.16 6.35 16 15 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 16 C -0.12 -3.96 5.10 30.51 0.16 -3.81 16 17 C -0.12 -2.64 6.09 30.52 0.19 -2.45 16 18 C 0.10 1.92 6.02 86.34 0.52 2.44 16 19 N -0.59 -16.50 2.74 -795.42 -2.18 -18.67 16 20 C 0.50 14.02 7.66 87.66 0.67 14.69 16 21 O -0.59 -22.39 15.31 -3.01 -0.05 -22.44 16 22 C -0.12 -1.99 4.00 29.85 0.12 -1.87 16 23 C -0.03 -0.57 5.02 29.85 0.15 -0.42 16 24 C -0.19 -3.15 5.42 -19.94 -0.11 -3.26 16 25 C -0.23 -3.35 10.87 22.19 0.24 -3.11 16 26 C -0.04 -0.50 12.09 66.97 0.81 0.31 16 27 O -0.19 -2.92 10.65 -2.51 -0.03 -2.95 16 28 C -0.04 -0.61 12.01 66.97 0.80 0.19 16 29 H 0.25 14.77 8.31 -92.70 -0.77 14.00 16 30 H 0.01 0.47 7.30 -2.39 -0.02 0.45 16 31 H 0.01 0.67 7.59 -2.39 -0.02 0.65 16 32 H 0.08 2.84 6.83 -2.38 -0.02 2.83 16 33 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 34 H 0.05 1.82 7.12 -2.38 -0.02 1.81 16 35 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.10 1.60 8.14 -2.39 -0.02 1.59 16 37 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.13 1.34 5.81 -2.39 -0.01 1.33 16 39 H 0.08 1.41 7.54 -2.39 -0.02 1.39 16 40 H 0.12 1.50 7.60 -2.39 -0.02 1.49 16 41 H 0.12 1.42 7.94 -2.39 -0.02 1.40 16 42 H 0.07 1.44 8.10 -2.39 -0.02 1.42 16 43 H 0.06 1.40 8.10 -2.38 -0.02 1.38 16 44 H 0.15 1.93 8.06 -2.91 -0.02 1.91 16 45 H 0.23 0.96 8.06 -2.91 -0.02 0.93 16 46 H 0.22 1.88 8.06 -2.91 -0.02 1.86 16 Total: -1.00 -77.04 362.75 4.85 -72.18 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: 0.97 Total: 11.70 kcal Atomic # 6 Polarization: -1.88 SS G_CDS: 5.83 Total: 3.95 kcal Atomic # 7 Polarization: -107.22 SS G_CDS: -3.90 Total: -111.12 kcal Atomic # 8 Polarization: -25.32 SS G_CDS: -0.07 Total: -25.39 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 2.03 Total: 48.68 kcal Total: -77.04 4.85 -72.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049408453.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.797 kcal (2) G-P(sol) polarization free energy of solvation -77.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds