Wall clock time and date at job start Tue Mar 31 2020 12:25:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86797 * 119.99932 * 2 1 4 4 H 1.48499 * 109.47206 * 359.97438 * 3 2 1 5 5 H 1.48495 * 109.47450 * 119.99464 * 3 2 1 6 6 H 1.48507 * 109.46807 * 239.99541 * 3 2 1 7 7 C 1.38816 * 120.00156 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99731 * 354.12195 * 7 2 1 9 9 N 1.36934 * 120.00085 * 174.12905 * 7 2 1 10 10 C 1.48383 * 126.56099 * 339.76812 * 9 7 2 11 11 C 1.55468 * 106.97628 * 185.52663 * 10 9 7 12 12 C 1.53435 * 101.66951 * 22.59923 * 11 10 9 13 13 H 1.09003 * 111.15337 * 78.81735 * 12 11 10 14 14 C 1.45025 * 126.56132 * 159.46078 * 9 7 2 15 15 H 1.08995 * 108.69745 * 264.09062 * 14 9 7 16 16 C 1.51343 * 119.02327 * 29.31692 * 14 9 7 17 17 C 1.53864 * 107.27228 * 183.59782 * 16 14 9 18 18 C 1.52717 * 111.52099 * 302.85162 * 17 16 14 19 19 N 1.45727 * 116.36696 * 207.27671 * 12 11 10 20 20 C 1.34779 * 122.22395 * 350.07991 * 19 12 11 21 21 O 1.21276 * 120.00297 * 359.97438 * 20 19 12 22 22 C 1.50705 * 119.99494 * 179.97438 * 20 19 12 23 23 C 1.53006 * 109.46833 * 179.97438 * 22 20 19 24 24 C 1.50693 * 109.47079 * 180.02562 * 23 22 20 25 25 C 1.41387 * 126.57877 * 269.70856 * 24 23 22 26 26 C 1.34516 * 106.84234 * 179.83520 * 25 24 23 27 27 O 1.34309 * 108.41909 * 0.43026 * 26 25 24 28 28 C 1.34307 * 109.47295 * 359.72264 * 27 26 25 29 29 H 0.97007 * 119.99717 * 185.05916 * 1 2 3 30 30 H 1.08999 * 109.96043 * 304.90745 * 10 9 7 31 31 H 1.09005 * 109.95982 * 66.11143 * 10 9 7 32 32 H 1.09001 * 110.98765 * 140.69047 * 11 10 9 33 33 H 1.09001 * 110.98993 * 264.50215 * 11 10 9 34 34 H 1.09004 * 110.10224 * 64.05698 * 16 14 9 35 35 H 1.09004 * 109.73763 * 302.93150 * 16 14 9 36 36 H 1.09003 * 109.07446 * 182.32746 * 17 16 14 37 37 H 1.09000 * 109.01714 * 63.34562 * 17 16 14 38 38 H 1.08998 * 109.16308 * 288.13128 * 18 17 16 39 39 H 1.09000 * 109.16235 * 168.94001 * 18 17 16 40 40 H 1.08996 * 109.47242 * 299.98950 * 22 20 19 41 41 H 1.08995 * 109.47262 * 59.99864 * 22 20 19 42 42 H 1.09004 * 109.46845 * 299.99821 * 23 22 20 43 43 H 1.08997 * 109.47396 * 59.99656 * 23 22 20 44 44 H 1.07997 * 126.57915 * 0.02562 * 25 24 23 45 45 H 1.07997 * 125.79039 * 180.11541 * 26 25 24 46 46 H 1.08005 * 125.78493 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2852 2.7464 -0.0006 5 1 3.1038 1.6965 1.2125 6 1 3.1040 1.6963 -1.2125 7 6 2.0103 -1.2022 0.0005 8 1 1.4745 -2.1350 0.0967 9 7 3.3743 -1.2053 -0.1208 10 6 4.2156 -0.1118 -0.6667 11 6 5.6742 -0.6468 -0.7242 12 6 5.4474 -2.1640 -0.7529 13 1 5.1637 -2.5005 -1.7501 14 6 4.2735 -2.2756 0.2655 15 1 4.6574 -2.0661 1.2639 16 6 3.7751 -3.7040 0.2244 17 6 4.9037 -4.5974 0.7681 18 6 6.1927 -4.4206 -0.0316 19 7 6.5173 -2.9888 -0.2064 20 6 7.7226 -2.4802 0.1178 21 8 7.9457 -1.2990 -0.0431 22 6 8.7932 -3.3795 0.6803 23 6 10.0537 -2.5585 0.9599 24 6 11.1245 -3.4578 1.5217 25 6 11.3545 -3.7425 2.8874 26 6 12.3994 -4.5882 2.9385 27 8 12.8180 -4.8219 1.6839 28 6 12.0485 -4.1389 0.8206 29 1 -0.4850 -0.8369 0.0741 30 1 3.8769 0.1537 -1.6682 31 1 4.1637 0.7593 -0.0135 32 1 6.1781 -0.3102 -1.6303 33 1 6.2334 -0.3523 0.1639 34 1 3.5382 -3.9888 -0.8007 35 1 2.8892 -3.8030 0.8518 36 1 4.5906 -5.6400 0.7129 37 1 5.0922 -4.3371 1.8097 38 1 6.0720 -4.8822 -1.0115 39 1 7.0110 -4.9111 0.4956 40 1 8.4394 -3.8296 1.6077 41 1 9.0237 -4.1645 -0.0399 42 1 10.4075 -2.1086 0.0322 43 1 9.8236 -1.7732 1.6798 44 1 10.7964 -3.3576 3.7280 45 1 12.8318 -5.0043 3.8364 46 1 12.1541 -4.1367 -0.2542 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049408454.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:17 Heat of formation + Delta-G solvation = 19.079939 kcal Electronic energy + Delta-G solvation = -27274.555166 eV Core-core repulsion = 23553.036903 eV Total energy + Delta-G solvation = -3721.518263 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.80941 -40.50049 -38.12350 -35.70245 -35.04493 -32.79451 -32.40776 -31.60612 -29.78663 -28.95907 -28.70512 -25.58297 -24.38911 -23.51223 -21.86586 -21.76542 -21.34568 -20.36694 -19.64641 -18.82192 -17.75187 -17.24870 -16.37873 -16.14276 -15.96058 -15.77274 -15.00925 -14.91630 -14.47305 -14.41840 -14.23309 -13.84968 -13.42778 -13.12767 -13.05409 -12.83256 -12.61878 -12.37339 -12.28953 -12.19431 -12.17007 -11.83336 -11.42588 -11.12730 -11.05878 -10.79168 -10.64768 -10.55778 -10.25300 -10.06944 -9.93606 -9.31482 -9.06543 -8.99817 -8.79192 -8.64902 -8.33736 -7.02058 -6.23673 -3.26741 1.48839 2.30180 2.72854 2.87164 3.07639 3.48217 3.54642 3.75112 4.34967 4.52483 4.62740 4.64488 4.69447 4.86480 4.94874 4.97302 5.03985 5.11939 5.23738 5.25842 5.32742 5.42520 5.46877 5.51680 5.56485 5.59595 5.65680 5.79687 5.80489 5.87308 5.94010 5.96457 6.00780 6.09693 6.21591 6.25425 6.29352 6.52049 6.53395 6.58261 6.67803 6.84058 6.91717 7.02574 7.59069 7.77870 8.31135 8.35379 9.04915 9.60279 10.29197 11.22488 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.024390 B = 0.002999 C = 0.002817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.719880 B = 9334.922610 C = 9937.182430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.021 4.021 3 Si 1.076 2.924 4 H -0.302 1.302 5 H -0.297 1.297 6 H -0.283 1.283 7 C -0.317 4.317 8 H 0.076 0.924 9 N -0.603 5.603 10 C 0.103 3.897 11 C -0.115 4.115 12 C 0.115 3.885 13 H 0.082 0.918 14 C 0.159 3.841 15 H 0.023 0.977 16 C -0.114 4.114 17 C -0.130 4.130 18 C 0.111 3.889 19 N -0.601 5.601 20 C 0.515 3.485 21 O -0.535 6.535 22 C -0.132 4.132 23 C -0.035 4.035 24 C -0.175 4.175 25 C -0.208 4.208 26 C -0.045 4.045 27 O -0.180 6.180 28 C -0.042 4.042 29 H 0.260 0.740 30 H 0.049 0.951 31 H 0.033 0.967 32 H 0.068 0.932 33 H 0.091 0.909 34 H 0.063 0.937 35 H 0.069 0.931 36 H 0.074 0.926 37 H 0.064 0.936 38 H 0.067 0.933 39 H 0.080 0.920 40 H 0.091 0.909 41 H 0.090 0.910 42 H 0.079 0.921 43 H 0.081 0.919 44 H 0.148 0.852 45 H 0.201 0.799 46 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.370 -12.980 2.467 26.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.221 4.221 3 Si 0.910 3.090 4 H -0.231 1.231 5 H -0.225 1.225 6 H -0.211 1.211 7 C -0.445 4.445 8 H 0.094 0.906 9 N -0.329 5.329 10 C -0.021 4.021 11 C -0.153 4.153 12 C 0.011 3.989 13 H 0.100 0.900 14 C 0.050 3.950 15 H 0.041 0.959 16 C -0.152 4.152 17 C -0.169 4.169 18 C -0.011 4.011 19 N -0.335 5.335 20 C 0.304 3.696 21 O -0.413 6.413 22 C -0.173 4.173 23 C -0.073 4.073 24 C -0.177 4.177 25 C -0.227 4.227 26 C -0.112 4.112 27 O -0.075 6.075 28 C -0.110 4.110 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.050 0.950 32 H 0.087 0.913 33 H 0.109 0.891 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.092 0.908 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.098 0.902 40 H 0.110 0.890 41 H 0.108 0.892 42 H 0.097 0.903 43 H 0.099 0.901 44 H 0.166 0.834 45 H 0.217 0.783 46 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 23.432 -10.884 2.241 25.933 hybrid contribution -0.105 -1.780 0.279 1.805 sum 23.327 -12.664 2.519 26.662 Atomic orbital electron populations 1.70934 1.05598 1.29378 1.51415 1.25944 0.96590 1.01235 0.98282 0.83770 0.73020 0.75617 0.76616 1.23063 1.22543 1.21051 1.20095 0.79241 0.95079 1.50038 0.90620 1.44370 1.02469 1.13813 1.72280 1.22635 0.89817 0.92247 0.97396 1.22686 0.96105 0.92860 1.03611 1.22435 0.86904 0.92216 0.97356 0.89999 1.20856 0.89704 0.89477 0.94942 0.95938 1.21427 0.97509 0.94915 1.01360 1.21911 0.94726 1.00261 1.00004 1.21718 0.97931 0.80914 1.00587 1.48025 1.12549 1.09591 1.63298 1.20564 0.82476 0.88704 0.77906 1.90689 1.80064 1.16383 1.54136 1.21678 0.94256 0.98863 1.02454 1.19703 0.90284 0.95498 1.01798 1.20534 1.00450 1.03222 0.93470 1.21820 1.00755 1.02813 0.97344 1.24022 0.98819 1.02390 0.86001 1.84068 1.50078 1.57199 1.16188 1.23908 0.93704 0.97734 0.95649 0.93009 0.93264 0.94991 0.91291 0.89101 0.91850 0.91274 0.90766 0.91740 0.91485 0.90155 0.89018 0.89197 0.90272 0.90061 0.83443 0.78252 0.78234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.56 13.70 55.49 0.76 -28.80 16 2 C -0.02 -0.63 5.50 -17.43 -0.10 -0.72 16 3 Si 1.08 27.79 24.62 -169.99 -4.19 23.61 16 4 H -0.30 -7.94 7.11 56.52 0.40 -7.54 16 5 H -0.30 -7.53 6.89 56.52 0.39 -7.14 16 6 H -0.28 -6.73 5.34 56.52 0.30 -6.43 16 7 C -0.32 -9.05 10.27 -15.06 -0.15 -9.21 16 8 H 0.08 2.25 7.61 -52.48 -0.40 1.85 16 9 N -0.60 -14.96 3.21 -162.93 -0.52 -15.48 16 10 C 0.10 2.38 4.66 -1.69 -0.01 2.37 16 11 C -0.11 -2.23 5.01 -25.19 -0.13 -2.35 16 12 C 0.12 2.04 3.33 -66.62 -0.22 1.82 16 13 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 14 C 0.16 3.22 2.61 -68.06 -0.18 3.04 16 15 H 0.02 0.50 8.05 -51.93 -0.42 0.08 16 16 C -0.11 -1.92 5.37 -27.12 -0.15 -2.07 16 17 C -0.13 -1.57 5.92 -26.43 -0.16 -1.72 16 18 C 0.11 1.19 6.32 -3.45 -0.02 1.17 16 19 N -0.60 -8.53 2.91 -163.79 -0.48 -9.01 16 20 C 0.52 7.20 7.69 -10.98 -0.08 7.12 16 21 O -0.54 -9.26 12.81 5.56 0.07 -9.19 16 22 C -0.13 -1.29 4.10 -27.88 -0.11 -1.40 16 23 C -0.03 -0.35 5.02 -27.88 -0.14 -0.49 16 24 C -0.18 -1.61 5.42 -104.75 -0.57 -2.17 16 25 C -0.21 -1.78 10.87 -39.70 -0.43 -2.21 16 26 C -0.04 -0.33 12.09 29.42 0.36 0.02 16 27 O -0.18 -1.59 10.65 5.68 0.06 -1.53 16 28 C -0.04 -0.35 12.01 29.41 0.35 0.01 16 29 H 0.26 8.12 8.73 -40.82 -0.36 7.76 16 30 H 0.05 1.16 6.86 -51.93 -0.36 0.80 16 31 H 0.03 0.78 4.06 -51.93 -0.21 0.57 16 32 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 33 H 0.09 1.86 6.21 -51.93 -0.32 1.53 16 34 H 0.06 1.07 8.12 -51.93 -0.42 0.65 16 35 H 0.07 1.29 7.87 -51.93 -0.41 0.88 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.08 0.64 6.18 -51.93 -0.32 0.32 16 40 H 0.09 0.81 7.76 -51.93 -0.40 0.41 16 41 H 0.09 0.71 8.01 -51.93 -0.42 0.29 16 42 H 0.08 0.81 8.10 -51.93 -0.42 0.39 16 43 H 0.08 0.92 8.10 -51.93 -0.42 0.49 16 44 H 0.15 1.10 8.06 -52.49 -0.42 0.67 16 45 H 0.20 0.77 8.06 -52.49 -0.42 0.35 16 46 H 0.20 1.06 8.06 -52.48 -0.42 0.63 16 LS Contribution 353.96 15.07 5.33 5.33 Total: -1.00 -34.70 353.96 -7.86 -42.56 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: -7.16 Total: -0.68 kcal Atomic # 6 Polarization: -5.08 SS G_CDS: -1.74 Total: -6.81 kcal Atomic # 7 Polarization: -53.05 SS G_CDS: -0.24 Total: -53.29 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: 0.13 Total: -10.72 kcal Atomic # 14 Polarization: 27.79 SS G_CDS: -4.19 Total: 23.61 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -34.70 -7.86 -42.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049408454.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.635 kcal (2) G-P(sol) polarization free energy of solvation -34.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.555 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds