Wall clock time and date at job start Tue Mar 31 2020 12:25:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86797 * 119.99932 * 2 1 4 4 H 1.48499 * 109.47206 * 359.97438 * 3 2 1 5 5 H 1.48495 * 109.47450 * 119.99464 * 3 2 1 6 6 H 1.48507 * 109.46807 * 239.99541 * 3 2 1 7 7 C 1.38816 * 120.00156 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99731 * 354.12195 * 7 2 1 9 9 N 1.36934 * 120.00085 * 174.12905 * 7 2 1 10 10 C 1.48383 * 126.56099 * 339.76812 * 9 7 2 11 11 C 1.55468 * 106.97628 * 185.52663 * 10 9 7 12 12 C 1.53435 * 101.66951 * 22.59923 * 11 10 9 13 13 H 1.09003 * 111.15337 * 78.81735 * 12 11 10 14 14 C 1.45025 * 126.56132 * 159.46078 * 9 7 2 15 15 H 1.08995 * 108.69745 * 264.09062 * 14 9 7 16 16 C 1.51343 * 119.02327 * 29.31692 * 14 9 7 17 17 C 1.53864 * 107.27228 * 183.59782 * 16 14 9 18 18 C 1.52717 * 111.52099 * 302.85162 * 17 16 14 19 19 N 1.45727 * 116.36696 * 207.27671 * 12 11 10 20 20 C 1.34779 * 122.22395 * 350.07991 * 19 12 11 21 21 O 1.21276 * 120.00297 * 359.97438 * 20 19 12 22 22 C 1.50705 * 119.99494 * 179.97438 * 20 19 12 23 23 C 1.53006 * 109.46833 * 179.97438 * 22 20 19 24 24 C 1.50693 * 109.47079 * 180.02562 * 23 22 20 25 25 C 1.41387 * 126.57877 * 269.70856 * 24 23 22 26 26 C 1.34516 * 106.84234 * 179.83520 * 25 24 23 27 27 O 1.34309 * 108.41909 * 0.43026 * 26 25 24 28 28 C 1.34307 * 109.47295 * 359.72264 * 27 26 25 29 29 H 0.97007 * 119.99717 * 185.05916 * 1 2 3 30 30 H 1.08999 * 109.96043 * 304.90745 * 10 9 7 31 31 H 1.09005 * 109.95982 * 66.11143 * 10 9 7 32 32 H 1.09001 * 110.98765 * 140.69047 * 11 10 9 33 33 H 1.09001 * 110.98993 * 264.50215 * 11 10 9 34 34 H 1.09004 * 110.10224 * 64.05698 * 16 14 9 35 35 H 1.09004 * 109.73763 * 302.93150 * 16 14 9 36 36 H 1.09003 * 109.07446 * 182.32746 * 17 16 14 37 37 H 1.09000 * 109.01714 * 63.34562 * 17 16 14 38 38 H 1.08998 * 109.16308 * 288.13128 * 18 17 16 39 39 H 1.09000 * 109.16235 * 168.94001 * 18 17 16 40 40 H 1.08996 * 109.47242 * 299.98950 * 22 20 19 41 41 H 1.08995 * 109.47262 * 59.99864 * 22 20 19 42 42 H 1.09004 * 109.46845 * 299.99821 * 23 22 20 43 43 H 1.08997 * 109.47396 * 59.99656 * 23 22 20 44 44 H 1.07997 * 126.57915 * 0.02562 * 25 24 23 45 45 H 1.07997 * 125.79039 * 180.11541 * 26 25 24 46 46 H 1.08005 * 125.78493 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2852 2.7464 -0.0006 5 1 3.1038 1.6965 1.2125 6 1 3.1040 1.6963 -1.2125 7 6 2.0103 -1.2022 0.0005 8 1 1.4745 -2.1350 0.0967 9 7 3.3743 -1.2053 -0.1208 10 6 4.2156 -0.1118 -0.6667 11 6 5.6742 -0.6468 -0.7242 12 6 5.4474 -2.1640 -0.7529 13 1 5.1637 -2.5005 -1.7501 14 6 4.2735 -2.2756 0.2655 15 1 4.6574 -2.0661 1.2639 16 6 3.7751 -3.7040 0.2244 17 6 4.9037 -4.5974 0.7681 18 6 6.1927 -4.4206 -0.0316 19 7 6.5173 -2.9888 -0.2064 20 6 7.7226 -2.4802 0.1178 21 8 7.9457 -1.2990 -0.0431 22 6 8.7932 -3.3795 0.6803 23 6 10.0537 -2.5585 0.9599 24 6 11.1245 -3.4578 1.5217 25 6 11.3545 -3.7425 2.8874 26 6 12.3994 -4.5882 2.9385 27 8 12.8180 -4.8219 1.6839 28 6 12.0485 -4.1389 0.8206 29 1 -0.4850 -0.8369 0.0741 30 1 3.8769 0.1537 -1.6682 31 1 4.1637 0.7593 -0.0135 32 1 6.1781 -0.3102 -1.6303 33 1 6.2334 -0.3523 0.1639 34 1 3.5382 -3.9888 -0.8007 35 1 2.8892 -3.8030 0.8518 36 1 4.5906 -5.6400 0.7129 37 1 5.0922 -4.3371 1.8097 38 1 6.0720 -4.8822 -1.0115 39 1 7.0110 -4.9111 0.4956 40 1 8.4394 -3.8296 1.6077 41 1 9.0237 -4.1645 -0.0399 42 1 10.4075 -2.1086 0.0322 43 1 9.8236 -1.7732 1.6798 44 1 10.7964 -3.3576 3.7280 45 1 12.8318 -5.0043 3.8364 46 1 12.1541 -4.1367 -0.2542 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049408454.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:16 Heat of formation + Delta-G solvation = -3.714426 kcal Electronic energy + Delta-G solvation = -27275.543604 eV Core-core repulsion = 23553.036903 eV Total energy + Delta-G solvation = -3722.506701 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.39236 -41.76374 -39.49757 -37.10577 -35.80940 -34.59752 -33.90000 -32.49236 -31.19869 -30.13692 -29.86933 -26.65238 -26.00814 -24.93403 -23.19864 -22.64313 -22.42032 -21.44593 -20.97395 -19.94193 -19.33815 -18.34600 -17.44737 -17.29921 -16.94124 -16.79533 -16.57866 -16.05772 -15.89820 -15.56145 -15.44587 -15.04506 -14.82042 -14.56098 -14.17128 -14.00901 -13.62623 -13.57370 -13.51308 -13.32664 -13.17976 -13.06351 -12.85830 -12.66908 -12.41744 -12.11097 -11.93773 -11.83990 -11.77175 -11.56286 -11.28133 -11.18939 -10.73362 -10.60236 -10.31757 -9.57754 -9.38232 -9.15058 -8.57360 -5.55722 0.92787 1.38536 1.45474 1.65074 1.67650 1.68359 2.00970 2.37765 2.49338 3.06302 3.19121 3.43546 3.73872 3.86269 3.88576 3.96004 4.01265 4.05714 4.12359 4.19637 4.22537 4.31275 4.35897 4.39945 4.42223 4.59063 4.62117 4.70124 4.72946 4.82544 4.85247 4.89720 4.94708 5.01428 5.06601 5.16299 5.21285 5.21602 5.27330 5.38967 5.39834 5.52078 5.64483 5.69067 6.09663 6.26727 6.52505 6.77858 7.23305 7.43433 8.11901 8.87884 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.024390 B = 0.002999 C = 0.002817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.719880 B = 9334.922610 C = 9937.182430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.078 4.078 3 Si 1.109 2.891 4 H -0.310 1.310 5 H -0.294 1.294 6 H -0.252 1.252 7 C -0.297 4.297 8 H 0.053 0.947 9 N -0.623 5.623 10 C 0.096 3.904 11 C -0.101 4.101 12 C 0.131 3.869 13 H 0.087 0.913 14 C 0.148 3.852 15 H 0.006 0.994 16 C -0.112 4.112 17 C -0.121 4.121 18 C 0.108 3.892 19 N -0.603 5.603 20 C 0.510 3.490 21 O -0.574 6.574 22 C -0.119 4.119 23 C -0.028 4.028 24 C -0.192 4.192 25 C -0.230 4.230 26 C -0.041 4.041 27 O -0.191 6.191 28 C -0.042 4.042 29 H 0.248 0.752 30 H 0.045 0.955 31 H 0.023 0.977 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.062 0.938 35 H 0.040 0.960 36 H 0.107 0.893 37 H 0.061 0.939 38 H 0.087 0.913 39 H 0.120 0.880 40 H 0.107 0.893 41 H 0.120 0.880 42 H 0.073 0.927 43 H 0.060 0.940 44 H 0.152 0.848 45 H 0.231 0.769 46 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.805 -15.281 2.175 30.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.611 5.611 2 C -0.271 4.271 3 Si 0.938 3.062 4 H -0.239 1.239 5 H -0.222 1.222 6 H -0.177 1.177 7 C -0.426 4.426 8 H 0.071 0.929 9 N -0.349 5.349 10 C -0.028 4.028 11 C -0.139 4.139 12 C 0.025 3.975 13 H 0.105 0.895 14 C 0.040 3.960 15 H 0.023 0.977 16 C -0.150 4.150 17 C -0.159 4.159 18 C -0.013 4.013 19 N -0.336 5.336 20 C 0.301 3.699 21 O -0.454 6.454 22 C -0.158 4.158 23 C -0.066 4.066 24 C -0.193 4.193 25 C -0.249 4.249 26 C -0.108 4.108 27 O -0.086 6.086 28 C -0.109 4.109 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.040 0.960 32 H 0.101 0.899 33 H 0.099 0.901 34 H 0.081 0.919 35 H 0.059 0.941 36 H 0.126 0.874 37 H 0.080 0.920 38 H 0.106 0.894 39 H 0.138 0.862 40 H 0.125 0.875 41 H 0.138 0.862 42 H 0.092 0.908 43 H 0.078 0.922 44 H 0.170 0.830 45 H 0.248 0.752 46 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 26.918 -13.248 1.948 30.065 hybrid contribution -1.138 -1.150 0.429 1.673 sum 25.780 -14.397 2.376 29.624 Atomic orbital electron populations 1.71020 1.06720 1.28716 1.54683 1.27049 0.96691 1.04400 0.98952 0.83364 0.72407 0.72348 0.78065 1.23853 1.22196 1.17707 1.20006 0.81329 0.93961 1.47321 0.92918 1.44491 1.01806 1.15940 1.72702 1.22715 0.91833 0.91708 0.96574 1.22547 0.93296 0.94266 1.03830 1.22061 0.86998 0.91663 0.96743 0.89537 1.21104 0.90070 0.90017 0.94783 0.97668 1.21422 0.98561 0.93911 1.01119 1.21887 0.93555 1.00768 0.99708 1.22028 0.98290 0.78898 1.02085 1.48143 1.11764 1.10658 1.63030 1.21348 0.82873 0.88766 0.76958 1.90672 1.80760 1.18369 1.55592 1.21666 0.92279 0.98374 1.03526 1.19556 0.90850 0.95245 1.00966 1.20518 1.00932 1.03873 0.94001 1.22031 1.01720 1.03724 0.97437 1.24627 0.98168 1.01568 0.86429 1.84088 1.50341 1.57388 1.16818 1.24372 0.92921 0.96914 0.96675 0.94279 0.93735 0.95994 0.89857 0.90060 0.91927 0.94081 0.87435 0.91991 0.89442 0.86191 0.87474 0.86181 0.90843 0.92164 0.83030 0.75233 0.75857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -63.57 13.70 21.65 0.30 -63.28 16 2 C -0.08 -4.78 5.50 84.86 0.47 -4.32 16 3 Si 1.11 57.21 24.62 68.60 1.69 58.90 16 4 H -0.31 -16.22 7.11 99.48 0.71 -15.52 16 5 H -0.29 -14.80 6.89 99.48 0.69 -14.12 16 6 H -0.25 -11.61 5.34 99.48 0.53 -11.08 16 7 C -0.30 -17.51 10.27 84.03 0.86 -16.65 16 8 H 0.05 3.29 7.61 -2.91 -0.02 3.27 16 9 N -0.62 -31.27 3.21 -669.40 -2.15 -33.42 16 10 C 0.10 4.37 4.66 86.87 0.41 4.78 16 11 C -0.10 -3.84 5.01 31.59 0.16 -3.68 16 12 C 0.13 4.41 3.33 46.26 0.15 4.56 16 13 H 0.09 2.86 8.14 -2.39 -0.02 2.84 16 14 C 0.15 5.95 2.61 45.70 0.12 6.07 16 15 H 0.01 0.25 8.05 -2.39 -0.02 0.23 16 16 C -0.11 -3.69 5.37 30.34 0.16 -3.52 16 17 C -0.12 -2.50 5.92 30.79 0.18 -2.32 16 18 C 0.11 1.80 6.32 86.03 0.54 2.34 16 19 N -0.60 -15.26 2.91 -790.49 -2.30 -17.56 16 20 C 0.51 12.87 7.69 87.66 0.67 13.55 16 21 O -0.57 -19.06 12.81 -3.02 -0.04 -19.10 16 22 C -0.12 -1.87 4.10 29.85 0.12 -1.75 16 23 C -0.03 -0.50 5.02 29.85 0.15 -0.35 16 24 C -0.19 -3.04 5.42 -19.94 -0.11 -3.15 16 25 C -0.23 -3.43 10.87 22.19 0.24 -3.19 16 26 C -0.04 -0.50 12.09 66.97 0.81 0.31 16 27 O -0.19 -2.83 10.65 -2.58 -0.03 -2.86 16 28 C -0.04 -0.56 12.01 66.97 0.80 0.25 16 29 H 0.25 16.25 8.73 -92.70 -0.81 15.44 16 30 H 0.04 2.06 6.86 -2.39 -0.02 2.04 16 31 H 0.02 1.07 4.06 -2.38 -0.01 1.06 16 32 H 0.08 2.90 8.14 -2.39 -0.02 2.88 16 33 H 0.08 3.27 6.21 -2.39 -0.01 3.26 16 34 H 0.06 2.05 8.12 -2.39 -0.02 2.03 16 35 H 0.04 1.55 7.87 -2.38 -0.02 1.54 16 36 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.12 1.14 6.18 -2.39 -0.01 1.13 16 40 H 0.11 1.43 7.76 -2.39 -0.02 1.41 16 41 H 0.12 1.23 8.01 -2.39 -0.02 1.21 16 42 H 0.07 1.37 8.10 -2.38 -0.02 1.35 16 43 H 0.06 1.31 8.10 -2.39 -0.02 1.29 16 44 H 0.15 2.01 8.06 -2.91 -0.02 1.98 16 45 H 0.23 1.01 8.06 -2.91 -0.02 0.98 16 46 H 0.23 1.59 8.06 -2.91 -0.02 1.57 16 Total: -1.00 -79.43 353.96 3.95 -75.48 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: 0.74 Total: 8.90 kcal Atomic # 6 Polarization: -12.81 SS G_CDS: 5.75 Total: -7.06 kcal Atomic # 7 Polarization: -110.10 SS G_CDS: -4.15 Total: -114.25 kcal Atomic # 8 Polarization: -21.89 SS G_CDS: -0.07 Total: -21.96 kcal Atomic # 14 Polarization: 57.21 SS G_CDS: 1.69 Total: 58.90 kcal Total: -79.43 3.95 -75.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049408454.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.765 kcal (2) G-P(sol) polarization free energy of solvation -79.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds