Wall clock time and date at job start Tue Mar 31 2020 12:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 120.00094 * 2 1 4 4 H 1.48501 * 109.47319 * 264.99659 * 3 2 1 5 5 H 1.48499 * 109.47076 * 24.99129 * 3 2 1 6 6 H 1.48494 * 109.47152 * 144.99498 * 3 2 1 7 7 C 1.38810 * 119.99879 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99795 * 187.37812 * 7 2 1 9 9 N 1.36932 * 120.00206 * 7.37970 * 7 2 1 10 10 C 1.46925 * 125.37654 * 185.82585 * 9 7 2 11 11 C 1.54185 * 106.26520 * 162.11002 * 10 9 7 12 12 H 1.08997 * 109.28364 * 271.45210 * 11 10 9 13 13 C 1.50711 * 110.50988 * 151.09661 * 11 10 9 14 14 C 1.51330 * 113.54417 * 289.39600 * 13 11 10 15 15 C 1.51638 * 111.98078 * 304.60880 * 14 13 11 16 16 N 1.44514 * 112.64931 * 42.75971 * 15 14 13 17 17 C 1.34775 * 116.62748 * 154.60464 * 16 15 14 18 18 O 1.21276 * 120.00116 * 174.22414 * 17 16 15 19 19 C 1.50702 * 119.99932 * 353.95239 * 17 16 15 20 20 C 1.53001 * 109.47114 * 180.27607 * 19 17 16 21 21 C 1.50696 * 109.47438 * 179.97438 * 20 19 17 22 22 C 1.34519 * 125.79136 * 89.99869 * 21 20 19 23 23 C 1.41378 * 106.84336 * 180.02562 * 22 21 20 24 24 C 1.34517 * 106.84067 * 359.97438 * 23 22 21 25 25 O 1.34299 * 108.41682 * 359.73784 * 24 23 22 26 26 C 1.44097 * 126.74180 * 334.88593 * 16 15 14 27 27 H 1.09002 * 109.10819 * 253.58702 * 26 16 15 28 28 C 1.46817 * 125.37903 * 5.78021 * 9 7 2 29 29 H 0.96995 * 120.00011 * 359.97438 * 1 2 3 30 30 H 1.09004 * 110.09951 * 42.91049 * 10 9 7 31 31 H 1.08996 * 110.14942 * 281.33625 * 10 9 7 32 32 H 1.09000 * 108.67116 * 168.34292 * 13 11 10 33 33 H 1.09000 * 108.56656 * 50.36757 * 13 11 10 34 34 H 1.08998 * 108.97890 * 183.96988 * 14 13 11 35 35 H 1.08998 * 108.91746 * 65.20432 * 14 13 11 36 36 H 1.09001 * 108.84655 * 281.94725 * 15 14 13 37 37 H 1.08996 * 108.76880 * 163.52100 * 15 14 13 38 38 H 1.08999 * 109.47415 * 300.27750 * 19 17 16 39 39 H 1.08997 * 109.47320 * 60.28024 * 19 17 16 40 40 H 1.09007 * 109.46924 * 300.00087 * 20 19 17 41 41 H 1.09003 * 109.47375 * 59.99945 * 20 19 17 42 42 H 1.08007 * 126.57851 * 0.03678 * 22 21 20 43 43 H 1.08005 * 126.57827 * 179.97438 * 23 22 21 44 44 H 1.08000 * 125.78810 * 179.97438 * 24 23 22 45 45 H 1.09006 * 109.83712 * 300.44188 * 28 9 7 46 46 H 1.09000 * 109.83858 * 61.44565 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6035 1.9854 -1.3947 5 1 1.3988 2.6809 0.5915 6 1 3.4908 1.4730 0.8031 7 6 2.0102 -1.2021 -0.0005 8 1 3.0835 -1.2060 0.1196 9 7 1.3341 -2.3830 -0.1534 10 6 1.9284 -3.7229 -0.0515 11 6 0.7554 -4.7005 0.1619 12 1 0.5528 -4.7923 1.2290 13 6 1.0902 -6.0579 -0.4010 14 6 1.1320 -6.0916 -1.9133 15 6 -0.1620 -5.5947 -2.5281 16 7 -0.6747 -4.4156 -1.8684 17 6 -1.4653 -3.6081 -2.6029 18 8 -2.0134 -2.6595 -2.0828 19 6 -1.6635 -3.8805 -4.0718 20 6 -2.5927 -2.8203 -4.6663 21 6 -2.7903 -3.0923 -6.1353 22 6 -3.7565 -3.8604 -6.6701 23 6 -3.5685 -3.8388 -8.0711 24 6 -2.4990 -3.0583 -8.3088 25 8 -2.0356 -2.6040 -7.1330 26 6 -0.4237 -4.0108 -0.5084 27 1 -1.3196 -4.1862 0.0872 28 6 -0.0994 -2.5104 -0.4440 29 1 -0.4850 0.8400 0.0004 30 1 2.6111 -3.7662 0.7972 31 1 2.4587 -3.9693 -0.9713 32 1 0.3427 -6.7725 -0.0565 33 1 2.0646 -6.3616 -0.0182 34 1 1.3092 -7.1162 -2.2403 35 1 1.9527 -5.4627 -2.2582 36 1 -0.9086 -6.3863 -2.4648 37 1 0.0154 -5.3617 -3.5780 38 1 -0.7003 -3.8462 -4.5809 39 1 -2.1081 -4.8672 -4.2016 40 1 -3.5559 -2.8547 -4.1572 41 1 -2.1481 -1.8335 -4.5365 42 1 -4.5280 -4.3917 -6.1323 43 1 -4.1684 -4.3508 -8.8090 44 1 -2.0858 -2.8320 -9.2806 45 1 -0.6808 -2.0371 0.3473 46 1 -0.3257 -2.0418 -1.4018 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049973699.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:05 Heat of formation + Delta-G solvation = 15.362179 kcal Electronic energy + Delta-G solvation = -27713.092232 eV Core-core repulsion = 23991.412755 eV Total energy + Delta-G solvation = -3721.679477 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.59667 -40.54599 -37.83675 -35.43083 -34.00101 -33.16966 -32.81671 -32.00209 -29.77209 -28.86735 -27.09111 -25.61168 -24.70668 -23.70843 -22.03661 -21.79149 -20.79845 -20.23174 -19.27203 -17.82546 -17.55424 -16.90641 -16.39199 -16.07114 -15.79766 -15.42169 -14.87755 -14.52857 -14.26756 -14.03615 -13.87666 -13.66503 -13.43213 -12.88029 -12.81627 -12.64750 -12.56462 -12.39673 -12.08486 -12.00546 -11.64365 -11.29210 -11.10261 -10.98310 -10.87326 -10.73692 -10.59773 -10.27338 -10.18419 -9.98428 -9.97369 -9.84569 -9.60526 -9.06122 -8.51122 -8.44345 -7.94564 -6.66201 -5.54705 -2.93187 1.68154 2.54535 2.95119 3.08240 3.47032 3.49644 3.51795 3.53869 4.54661 4.59608 4.83205 4.87456 4.94214 4.95924 5.00814 5.08651 5.13811 5.19186 5.28609 5.42045 5.49662 5.58276 5.66859 5.70381 5.74723 5.76105 5.87194 5.94383 5.96917 5.99850 6.01323 6.10701 6.18204 6.24443 6.25767 6.46422 6.49332 6.63581 6.75343 6.82180 7.11826 7.15308 7.66458 7.80659 7.89774 8.07805 8.42364 8.70903 9.34277 9.95905 10.60766 11.52184 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.011188 B = 0.004270 C = 0.003372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2501.984464 B = 6555.346030 C = 8301.806694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C -0.005 4.005 3 Si 0.907 3.093 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.235 4.235 8 H 0.075 0.925 9 N -0.606 5.606 10 C 0.142 3.858 11 C -0.103 4.103 12 H 0.079 0.921 13 C -0.101 4.101 14 C -0.128 4.128 15 C 0.116 3.884 16 N -0.590 5.590 17 C 0.498 3.502 18 O -0.507 6.507 19 C -0.134 4.134 20 C -0.029 4.029 21 C 0.002 3.998 22 C -0.217 4.217 23 C -0.215 4.215 24 C -0.049 4.049 25 O -0.174 6.174 26 C 0.133 3.867 27 H 0.057 0.943 28 C 0.166 3.834 29 H 0.252 0.748 30 H 0.032 0.968 31 H 0.015 0.985 32 H 0.056 0.944 33 H 0.065 0.935 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.053 0.947 37 H 0.072 0.928 38 H 0.094 0.906 39 H 0.091 0.909 40 H 0.102 0.898 41 H 0.093 0.907 42 H 0.147 0.853 43 H 0.145 0.855 44 H 0.200 0.800 45 H 0.069 0.931 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.497 -15.019 -12.098 19.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.202 4.202 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.208 1.208 7 C -0.364 4.364 8 H 0.092 0.908 9 N -0.333 5.333 10 C 0.015 3.985 11 C -0.122 4.122 12 H 0.098 0.902 13 C -0.139 4.139 14 C -0.166 4.166 15 C -0.008 4.008 16 N -0.325 5.325 17 C 0.285 3.715 18 O -0.381 6.381 19 C -0.174 4.174 20 C -0.066 4.066 21 C -0.049 4.049 22 C -0.236 4.236 23 C -0.234 4.234 24 C -0.116 4.116 25 O -0.070 6.070 26 C 0.029 3.971 27 H 0.075 0.925 28 C 0.041 3.959 29 H 0.063 0.937 30 H 0.050 0.950 31 H 0.032 0.968 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.071 0.929 37 H 0.090 0.910 38 H 0.112 0.888 39 H 0.110 0.890 40 H 0.121 0.879 41 H 0.112 0.888 42 H 0.165 0.835 43 H 0.163 0.837 44 H 0.216 0.784 45 H 0.087 0.913 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.585 -14.112 -11.692 18.891 hybrid contribution 0.388 0.587 -0.263 0.751 sum -4.197 -13.525 -11.955 18.533 Atomic orbital electron populations 1.69974 1.04656 1.24932 1.55812 1.24826 0.95607 0.97559 1.02206 0.86218 0.78567 0.83861 0.77577 1.21684 1.21727 1.20829 1.18952 0.90729 0.82737 1.43957 0.90759 1.44393 1.05451 0.99801 1.83623 1.21388 0.93541 0.86042 0.97500 1.21319 0.96527 0.94510 0.99863 0.90226 1.20483 1.01723 0.96668 0.95062 1.21121 0.97694 1.01296 0.96481 1.20790 0.95883 0.87526 0.96609 1.46755 1.49205 1.23771 1.12723 1.20466 0.79803 0.82801 0.88412 1.90811 1.46650 1.28037 1.72647 1.21713 1.01600 1.00408 0.93729 1.19913 1.02038 1.00698 0.83952 1.22606 0.93094 0.98689 0.90487 1.21597 1.02454 1.05255 0.94283 1.21811 1.00519 1.04643 0.96445 1.24005 0.98195 1.00876 0.88548 1.84063 1.49644 1.58539 1.14752 1.21053 0.96759 0.98797 0.80473 0.92453 1.21714 0.84573 0.87078 1.02505 0.93729 0.95030 0.96780 0.92520 0.91582 0.90900 0.91174 0.92887 0.91011 0.88812 0.89035 0.87941 0.88830 0.83529 0.83684 0.78356 0.91303 0.92164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.12 10.41 55.49 0.58 -27.54 16 2 C 0.00 -0.14 5.45 -17.43 -0.09 -0.23 16 3 Si 0.91 22.98 29.56 -169.99 -5.02 17.95 16 4 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 5 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 6 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 7 C -0.24 -6.83 10.24 -15.06 -0.15 -6.99 16 8 H 0.07 2.08 7.84 -52.49 -0.41 1.67 16 9 N -0.61 -16.12 3.39 -171.52 -0.58 -16.70 16 10 C 0.14 2.99 6.65 -3.19 -0.02 2.97 16 11 C -0.10 -1.78 3.05 -91.57 -0.28 -2.06 16 12 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 13 C -0.10 -1.31 5.17 -28.72 -0.15 -1.45 16 14 C -0.13 -1.50 5.83 -28.26 -0.16 -1.66 16 15 C 0.12 1.42 5.70 -5.79 -0.03 1.39 16 16 N -0.59 -9.96 3.09 -170.33 -0.53 -10.49 16 17 C 0.50 8.87 6.77 -10.99 -0.07 8.79 16 18 O -0.51 -11.34 13.30 5.56 0.07 -11.26 16 19 C -0.13 -1.76 4.03 -27.88 -0.11 -1.88 16 20 C -0.03 -0.39 5.04 -27.88 -0.14 -0.53 16 21 C 0.00 0.02 6.58 -35.62 -0.23 -0.21 16 22 C -0.22 -2.45 10.81 -39.70 -0.43 -2.88 16 23 C -0.22 -2.17 10.91 -39.70 -0.43 -2.61 16 24 C -0.05 -0.50 12.09 29.42 0.36 -0.14 16 25 O -0.17 -2.32 10.65 5.73 0.06 -2.26 16 26 C 0.13 2.64 3.09 -69.30 -0.21 2.42 16 27 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 28 C 0.17 4.29 4.20 -3.54 -0.01 4.27 16 29 H 0.25 7.64 8.31 -40.82 -0.34 7.30 16 30 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.01 0.30 6.69 -51.93 -0.35 -0.05 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.07 0.78 8.10 -51.93 -0.42 0.36 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.93 6.99 -51.93 -0.36 0.56 16 36 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.78 6.07 -51.93 -0.32 0.46 16 38 H 0.09 1.19 7.38 -51.93 -0.38 0.80 16 39 H 0.09 0.95 7.92 -51.93 -0.41 0.54 16 40 H 0.10 1.34 8.10 -51.93 -0.42 0.92 16 41 H 0.09 1.47 8.10 -51.93 -0.42 1.05 16 42 H 0.15 1.40 8.06 -52.48 -0.42 0.97 16 43 H 0.15 1.10 8.06 -52.48 -0.42 0.68 16 44 H 0.20 1.26 8.06 -52.49 -0.42 0.83 16 45 H 0.07 2.05 6.86 -51.93 -0.36 1.69 16 46 H 0.06 1.74 5.19 -51.93 -0.27 1.47 16 LS Contribution 357.91 15.07 5.39 5.39 Total: -1.00 -35.14 357.91 -9.28 -44.41 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -7.06 Total: 1.28 kcal Atomic # 6 Polarization: 1.40 SS G_CDS: -2.19 Total: -0.80 kcal Atomic # 7 Polarization: -54.20 SS G_CDS: -0.53 Total: -54.73 kcal Atomic # 8 Polarization: -13.65 SS G_CDS: 0.13 Total: -13.52 kcal Atomic # 14 Polarization: 22.98 SS G_CDS: -5.02 Total: 17.95 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -35.14 -9.28 -44.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049973699.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.777 kcal (2) G-P(sol) polarization free energy of solvation -35.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds