Wall clock time and date at job start Tue Mar 31 2020 12:10:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 120.00094 * 2 1 4 4 H 1.48501 * 109.47319 * 264.99659 * 3 2 1 5 5 H 1.48499 * 109.47076 * 24.99129 * 3 2 1 6 6 H 1.48494 * 109.47152 * 144.99498 * 3 2 1 7 7 C 1.38810 * 119.99879 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99795 * 187.37812 * 7 2 1 9 9 N 1.36932 * 120.00206 * 7.37970 * 7 2 1 10 10 C 1.46925 * 125.37654 * 185.82585 * 9 7 2 11 11 C 1.54185 * 106.26520 * 162.11002 * 10 9 7 12 12 H 1.08997 * 109.28364 * 271.45210 * 11 10 9 13 13 C 1.50711 * 110.50988 * 151.09661 * 11 10 9 14 14 C 1.51330 * 113.54417 * 289.39600 * 13 11 10 15 15 C 1.51638 * 111.98078 * 304.60880 * 14 13 11 16 16 N 1.44514 * 112.64931 * 42.75971 * 15 14 13 17 17 C 1.34775 * 116.62748 * 154.60464 * 16 15 14 18 18 O 1.21276 * 120.00116 * 174.22414 * 17 16 15 19 19 C 1.50702 * 119.99932 * 353.95239 * 17 16 15 20 20 C 1.53001 * 109.47114 * 180.27607 * 19 17 16 21 21 C 1.50696 * 109.47438 * 179.97438 * 20 19 17 22 22 C 1.34519 * 125.79136 * 89.99869 * 21 20 19 23 23 C 1.41378 * 106.84336 * 180.02562 * 22 21 20 24 24 C 1.34517 * 106.84067 * 359.97438 * 23 22 21 25 25 O 1.34299 * 108.41682 * 359.73784 * 24 23 22 26 26 C 1.44097 * 126.74180 * 334.88593 * 16 15 14 27 27 H 1.09002 * 109.10819 * 253.58702 * 26 16 15 28 28 C 1.46817 * 125.37903 * 5.78021 * 9 7 2 29 29 H 0.96995 * 120.00011 * 359.97438 * 1 2 3 30 30 H 1.09004 * 110.09951 * 42.91049 * 10 9 7 31 31 H 1.08996 * 110.14942 * 281.33625 * 10 9 7 32 32 H 1.09000 * 108.67116 * 168.34292 * 13 11 10 33 33 H 1.09000 * 108.56656 * 50.36757 * 13 11 10 34 34 H 1.08998 * 108.97890 * 183.96988 * 14 13 11 35 35 H 1.08998 * 108.91746 * 65.20432 * 14 13 11 36 36 H 1.09001 * 108.84655 * 281.94725 * 15 14 13 37 37 H 1.08996 * 108.76880 * 163.52100 * 15 14 13 38 38 H 1.08999 * 109.47415 * 300.27750 * 19 17 16 39 39 H 1.08997 * 109.47320 * 60.28024 * 19 17 16 40 40 H 1.09007 * 109.46924 * 300.00087 * 20 19 17 41 41 H 1.09003 * 109.47375 * 59.99945 * 20 19 17 42 42 H 1.08007 * 126.57851 * 0.03678 * 22 21 20 43 43 H 1.08005 * 126.57827 * 179.97438 * 23 22 21 44 44 H 1.08000 * 125.78810 * 179.97438 * 24 23 22 45 45 H 1.09006 * 109.83712 * 300.44188 * 28 9 7 46 46 H 1.09000 * 109.83858 * 61.44565 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6035 1.9854 -1.3947 5 1 1.3988 2.6809 0.5915 6 1 3.4908 1.4730 0.8031 7 6 2.0102 -1.2021 -0.0005 8 1 3.0835 -1.2060 0.1196 9 7 1.3341 -2.3830 -0.1534 10 6 1.9284 -3.7229 -0.0515 11 6 0.7554 -4.7005 0.1619 12 1 0.5528 -4.7923 1.2290 13 6 1.0902 -6.0579 -0.4010 14 6 1.1320 -6.0916 -1.9133 15 6 -0.1620 -5.5947 -2.5281 16 7 -0.6747 -4.4156 -1.8684 17 6 -1.4653 -3.6081 -2.6029 18 8 -2.0134 -2.6595 -2.0828 19 6 -1.6635 -3.8805 -4.0718 20 6 -2.5927 -2.8203 -4.6663 21 6 -2.7903 -3.0923 -6.1353 22 6 -3.7565 -3.8604 -6.6701 23 6 -3.5685 -3.8388 -8.0711 24 6 -2.4990 -3.0583 -8.3088 25 8 -2.0356 -2.6040 -7.1330 26 6 -0.4237 -4.0108 -0.5084 27 1 -1.3196 -4.1862 0.0872 28 6 -0.0994 -2.5104 -0.4440 29 1 -0.4850 0.8400 0.0004 30 1 2.6111 -3.7662 0.7972 31 1 2.4587 -3.9693 -0.9713 32 1 0.3427 -6.7725 -0.0565 33 1 2.0646 -6.3616 -0.0182 34 1 1.3092 -7.1162 -2.2403 35 1 1.9527 -5.4627 -2.2582 36 1 -0.9086 -6.3863 -2.4648 37 1 0.0154 -5.3617 -3.5780 38 1 -0.7003 -3.8462 -4.5809 39 1 -2.1081 -4.8672 -4.2016 40 1 -3.5559 -2.8547 -4.1572 41 1 -2.1481 -1.8335 -4.5365 42 1 -4.5280 -4.3917 -6.1323 43 1 -4.1684 -4.3508 -8.8090 44 1 -2.0858 -2.8320 -9.2806 45 1 -0.6808 -2.0371 0.3473 46 1 -0.3257 -2.0418 -1.4018 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049973699.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:03 Heat of formation + Delta-G solvation = -7.541847 kcal Electronic energy + Delta-G solvation = -27714.085425 eV Core-core repulsion = 23991.412755 eV Total energy + Delta-G solvation = -3722.672670 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -43.46669 -41.96395 -39.32507 -37.03116 -35.15470 -34.65190 -33.79771 -33.61960 -31.53912 -29.96407 -28.62993 -27.34364 -26.02171 -25.08915 -23.37446 -22.63297 -22.48727 -21.27541 -20.64859 -19.30012 -18.79475 -18.41131 -17.66635 -17.27793 -17.13232 -16.84995 -16.39491 -15.98538 -15.69167 -15.35380 -15.12489 -15.08402 -14.64422 -14.20806 -14.11211 -13.71379 -13.68397 -13.60815 -13.45760 -13.28193 -13.13509 -12.96176 -12.85693 -12.61322 -12.38504 -12.10334 -12.08470 -11.93515 -11.76374 -11.58532 -11.42060 -11.32114 -10.82202 -10.78447 -10.44073 -9.39448 -9.34416 -8.84403 -7.79453 -5.21336 0.81456 1.40038 1.43980 1.52129 1.69330 1.75162 2.04825 2.28888 2.48322 3.32767 3.45663 3.66811 3.73789 3.85077 3.89981 4.00974 4.01800 4.07963 4.13932 4.15979 4.20080 4.33718 4.45386 4.61440 4.63243 4.69284 4.73683 4.78728 4.86680 4.93735 4.95961 4.99518 5.01104 5.10340 5.16562 5.21153 5.26929 5.39784 5.43245 5.49189 5.55372 5.67520 5.83877 6.02517 6.23637 6.26930 6.50745 7.08791 7.34662 7.80954 8.43603 9.25176 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.011188 B = 0.004270 C = 0.003372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2501.984464 B = 6555.346030 C = 8301.806694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.067 4.067 3 Si 0.976 3.024 4 H -0.288 1.288 5 H -0.295 1.295 6 H -0.263 1.263 7 C -0.248 4.248 8 H 0.082 0.918 9 N -0.629 5.629 10 C 0.136 3.864 11 C -0.089 4.089 12 H 0.080 0.920 13 C -0.098 4.098 14 C -0.126 4.126 15 C 0.102 3.898 16 N -0.590 5.590 17 C 0.487 3.513 18 O -0.567 6.567 19 C -0.117 4.117 20 C -0.022 4.022 21 C -0.027 4.027 22 C -0.209 4.209 23 C -0.222 4.222 24 C -0.049 4.049 25 O -0.201 6.201 26 C 0.146 3.854 27 H 0.048 0.952 28 C 0.181 3.819 29 H 0.242 0.758 30 H 0.036 0.964 31 H 0.025 0.975 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.117 0.883 35 H 0.051 0.949 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.102 0.898 39 H 0.131 0.869 40 H 0.100 0.900 41 H 0.056 0.944 42 H 0.164 0.836 43 H 0.173 0.827 44 H 0.234 0.766 45 H 0.013 0.987 46 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.511 -18.576 -14.134 23.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.261 4.261 3 Si 0.804 3.196 4 H -0.215 1.215 5 H -0.222 1.222 6 H -0.188 1.188 7 C -0.378 4.378 8 H 0.100 0.900 9 N -0.356 5.356 10 C 0.011 3.989 11 C -0.109 4.109 12 H 0.099 0.901 13 C -0.135 4.135 14 C -0.164 4.164 15 C -0.019 4.019 16 N -0.323 5.323 17 C 0.276 3.724 18 O -0.446 6.446 19 C -0.156 4.156 20 C -0.060 4.060 21 C -0.076 4.076 22 C -0.228 4.228 23 C -0.240 4.240 24 C -0.115 4.115 25 O -0.098 6.098 26 C 0.041 3.959 27 H 0.066 0.934 28 C 0.056 3.944 29 H 0.052 0.948 30 H 0.054 0.946 31 H 0.043 0.957 32 H 0.100 0.900 33 H 0.103 0.897 34 H 0.135 0.865 35 H 0.070 0.930 36 H 0.105 0.895 37 H 0.108 0.892 38 H 0.120 0.880 39 H 0.149 0.851 40 H 0.119 0.881 41 H 0.074 0.926 42 H 0.181 0.819 43 H 0.190 0.810 44 H 0.250 0.750 45 H 0.031 0.969 46 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -3.551 -17.750 -13.742 22.727 hybrid contribution 0.085 1.676 0.325 1.709 sum -3.466 -16.074 -13.417 21.222 Atomic orbital electron populations 1.70287 1.06416 1.24892 1.57390 1.25743 0.96438 1.01264 1.02620 0.85131 0.77723 0.79129 0.77599 1.21461 1.22203 1.18773 1.19409 0.91358 0.84115 1.42871 0.89988 1.44731 1.05985 1.01402 1.83486 1.21629 0.95022 0.84374 0.97899 1.21311 0.93251 0.96162 1.00136 0.90142 1.20509 1.03500 0.93489 0.96045 1.21186 0.96394 1.03466 0.95317 1.21261 0.97288 0.86256 0.97134 1.46844 1.48786 1.25120 1.11508 1.21385 0.78901 0.81846 0.90287 1.90792 1.49132 1.30563 1.74109 1.21663 1.02188 1.02044 0.89742 1.19714 1.01747 0.99057 0.85471 1.22399 0.94643 1.00712 0.89869 1.21908 1.01666 1.04072 0.95166 1.22185 1.00763 1.04758 0.96331 1.24819 0.98068 0.99898 0.88731 1.84040 1.50519 1.59407 1.15836 1.20590 0.97450 0.95082 0.82810 0.93357 1.21245 0.83799 0.90981 0.98408 0.94832 0.94626 0.95720 0.90004 0.89692 0.86463 0.92995 0.89454 0.89170 0.87984 0.85055 0.88132 0.92565 0.81882 0.80974 0.74967 0.96896 0.95993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -62.46 10.41 21.65 0.23 -62.23 16 2 C -0.07 -4.13 5.45 84.86 0.46 -3.66 16 3 Si 0.98 49.00 29.56 68.60 2.03 51.02 16 4 H -0.29 -14.22 7.11 99.48 0.71 -13.52 16 5 H -0.30 -14.91 7.11 99.48 0.71 -14.21 16 6 H -0.26 -12.25 7.11 99.48 0.71 -11.55 16 7 C -0.25 -14.92 10.24 84.03 0.86 -14.06 16 8 H 0.08 4.66 7.84 -2.91 -0.02 4.63 16 9 N -0.63 -34.84 3.39 -696.55 -2.36 -37.21 16 10 C 0.14 5.70 6.65 86.70 0.58 6.27 16 11 C -0.09 -2.99 3.05 -11.41 -0.03 -3.03 16 12 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 13 C -0.10 -2.12 5.17 29.31 0.15 -1.96 16 14 C -0.13 -2.37 5.83 29.60 0.17 -2.19 16 15 C 0.10 2.12 5.70 86.30 0.49 2.61 16 16 N -0.59 -19.55 3.09 -811.20 -2.51 -22.06 16 17 C 0.49 17.85 6.77 87.66 0.59 18.44 16 18 O -0.57 -27.56 13.30 -3.02 -0.04 -27.60 16 19 C -0.12 -2.99 4.03 29.85 0.12 -2.87 16 20 C -0.02 -0.63 5.04 29.85 0.15 -0.48 16 21 C -0.03 -0.67 6.58 24.83 0.16 -0.51 16 22 C -0.21 -4.31 10.81 22.19 0.24 -4.07 16 23 C -0.22 -3.85 10.91 22.19 0.24 -3.61 16 24 C -0.05 -0.88 12.09 66.97 0.81 -0.07 16 25 O -0.20 -5.25 10.65 -2.42 -0.03 -5.28 16 26 C 0.15 5.93 3.09 45.38 0.14 6.07 16 27 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 28 C 0.18 10.02 4.20 86.54 0.36 10.38 16 29 H 0.24 15.78 8.31 -92.71 -0.77 15.01 16 30 H 0.04 1.46 8.14 -2.38 -0.02 1.44 16 31 H 0.03 1.01 6.69 -2.39 -0.02 0.99 16 32 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.08 1.60 8.10 -2.39 -0.02 1.58 16 34 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.05 1.18 6.99 -2.39 -0.02 1.16 16 36 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.09 1.58 6.07 -2.39 -0.01 1.57 16 38 H 0.10 2.47 7.38 -2.39 -0.02 2.45 16 39 H 0.13 2.31 7.92 -2.39 -0.02 2.29 16 40 H 0.10 2.81 8.10 -2.38 -0.02 2.79 16 41 H 0.06 1.97 8.10 -2.39 -0.02 1.96 16 42 H 0.16 2.70 8.06 -2.91 -0.02 2.67 16 43 H 0.17 1.96 8.06 -2.91 -0.02 1.94 16 44 H 0.23 2.22 8.06 -2.91 -0.02 2.20 16 45 H 0.01 0.84 6.86 -2.38 -0.02 0.83 16 46 H 0.02 1.38 5.19 -2.39 -0.01 1.37 16 Total: -1.00 -85.64 357.91 3.79 -81.84 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: 0.97 Total: 14.26 kcal Atomic # 6 Polarization: 1.74 SS G_CDS: 5.50 Total: 7.24 kcal Atomic # 7 Polarization: -116.85 SS G_CDS: -4.64 Total: -121.49 kcal Atomic # 8 Polarization: -32.81 SS G_CDS: -0.07 Total: -32.88 kcal Atomic # 14 Polarization: 49.00 SS G_CDS: 2.03 Total: 51.02 kcal Total: -85.64 3.79 -81.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049973699.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.303 kcal (2) G-P(sol) polarization free energy of solvation -85.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds