Wall clock time and date at job start Tue Mar 31 2020 12:25:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 120.00150 * 2 1 4 4 H 1.48498 * 109.47177 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47150 * 300.00322 * 3 2 1 6 6 H 1.48509 * 109.47015 * 60.00195 * 3 2 1 7 7 C 1.38814 * 119.99692 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99776 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00100 * 359.97438 * 7 2 1 10 10 C 1.47526 * 125.70028 * 180.02562 * 9 7 2 11 11 C 1.55532 * 104.68497 * 204.52487 * 10 9 7 12 12 H 1.09000 * 113.17114 * 202.06298 * 11 10 9 13 13 C 1.52947 * 107.01705 * 77.85770 * 11 10 9 14 14 C 1.52752 * 110.76401 * 195.20771 * 13 11 10 15 15 C 1.53449 * 108.47973 * 63.66494 * 14 13 11 16 16 N 1.46812 * 107.66982 * 302.06923 * 15 14 13 17 17 C 1.34774 * 119.61208 * 232.17619 * 16 15 14 18 18 O 1.21283 * 119.99834 * 179.97438 * 17 16 15 19 19 C 1.50699 * 120.00036 * 359.97438 * 17 16 15 20 20 C 1.53005 * 109.47363 * 180.02562 * 19 17 16 21 21 C 1.50699 * 109.47363 * 180.02562 * 20 19 17 22 22 C 1.41381 * 126.58183 * 89.99625 * 21 20 19 23 23 C 1.34505 * 106.84189 * 179.97438 * 22 21 20 24 24 O 1.34300 * 108.42149 * 0.02562 * 23 22 21 25 25 C 1.34301 * 109.47641 * 359.76718 * 24 23 22 26 26 C 1.45170 * 120.77536 * 52.17097 * 16 15 14 27 27 H 1.08999 * 109.70537 * 192.24116 * 26 16 15 28 28 C 1.47282 * 125.70153 * 359.97438 * 9 7 2 29 29 H 0.97004 * 119.99851 * 359.97438 * 1 2 3 30 30 H 1.08993 * 110.39638 * 85.72114 * 10 9 7 31 31 H 1.09010 * 110.39700 * 323.32041 * 10 9 7 32 32 H 1.08999 * 109.21983 * 315.54065 * 13 11 10 33 33 H 1.09006 * 109.21659 * 74.87635 * 13 11 10 34 34 H 1.08993 * 109.63441 * 183.36260 * 14 13 11 35 35 H 1.08999 * 109.63416 * 303.96810 * 14 13 11 36 36 H 1.08996 * 109.82413 * 61.61002 * 15 14 13 37 37 H 1.08995 * 109.82260 * 182.53056 * 15 14 13 38 38 H 1.09005 * 109.47465 * 300.00019 * 19 17 16 39 39 H 1.09007 * 109.47389 * 59.99875 * 19 17 16 40 40 H 1.08999 * 109.46503 * 300.00004 * 20 19 17 41 41 H 1.09001 * 109.46776 * 59.99938 * 20 19 17 42 42 H 1.08002 * 126.57797 * 0.02562 * 22 21 20 43 43 H 1.08001 * 125.79285 * 180.02562 * 23 22 21 44 44 H 1.08006 * 125.78940 * 180.23986 * 25 24 23 45 45 H 1.08997 * 109.99161 * 59.61858 * 28 9 7 46 46 H 1.09001 * 109.98481 * 298.29732 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 1.9325 -3.7326 -0.0005 11 6 0.8472 -4.6552 -0.6250 12 1 0.9704 -5.7046 -0.3571 13 6 0.8887 -4.4345 -2.1379 14 6 -0.3665 -4.9975 -2.8019 15 6 -1.5820 -4.2164 -2.2853 16 7 -1.6097 -4.3508 -0.8236 17 6 -2.7375 -4.7669 -0.2143 18 8 -2.7680 -4.8808 0.9928 19 6 -3.9607 -5.0906 -1.0329 20 6 -5.0928 -5.5349 -0.1044 21 6 -6.3158 -5.8593 -0.9230 22 6 -6.6524 -7.1176 -1.4728 23 6 -7.8191 -6.9592 -2.1232 24 8 -8.2045 -5.6789 -1.9977 25 6 -7.2991 -5.0082 -1.2668 26 6 -0.4364 -4.0408 -0.0269 27 1 -0.5775 -4.4030 0.9914 28 6 -0.1400 -2.5343 0.0005 29 1 -0.4850 0.8401 0.0004 30 1 2.1583 -4.0475 1.0182 31 1 2.8357 -3.7417 -0.6109 32 1 0.9546 -3.3660 -2.3430 33 1 1.7666 -4.9328 -2.5493 34 1 -0.2909 -4.8842 -3.8833 35 1 -0.4736 -6.0520 -2.5478 36 1 -1.4891 -3.1652 -2.5581 37 1 -2.4958 -4.6303 -2.7117 38 1 -4.2721 -4.2050 -1.5868 39 1 -3.7278 -5.8934 -1.7325 40 1 -4.7817 -6.4204 0.4498 41 1 -5.3256 -4.7318 0.5948 42 1 -6.0825 -8.0309 -1.3864 43 1 -8.3550 -7.7308 -2.6560 44 1 -7.3507 -3.9624 -1.0018 45 1 -0.5630 -2.0554 -0.8826 46 1 -0.5583 -2.0885 0.9030 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050015485.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:20 Heat of formation + Delta-G solvation = 3.925572 kcal Electronic energy + Delta-G solvation = -27246.416127 eV Core-core repulsion = 23524.240721 eV Total energy + Delta-G solvation = -3722.175405 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.69637 -40.25711 -38.06126 -35.21418 -34.89725 -32.80263 -31.93766 -31.49826 -29.58932 -29.03345 -27.38742 -25.50474 -24.89204 -23.50837 -21.93130 -21.75014 -20.60626 -20.14849 -19.59329 -17.98486 -17.67714 -16.91335 -16.68541 -16.10277 -15.52698 -15.44208 -14.92274 -14.69575 -14.30465 -14.03448 -13.92799 -13.63224 -13.24773 -12.97370 -12.81202 -12.65784 -12.54743 -12.23241 -11.99244 -11.81553 -11.75147 -11.54386 -11.03527 -11.00262 -10.94462 -10.80113 -10.65040 -10.34743 -10.25005 -9.88364 -9.85882 -9.78229 -9.59606 -9.34681 -8.68791 -8.60493 -8.08271 -6.82885 -5.70313 -3.04475 1.60621 2.41949 2.95192 2.99021 3.37537 3.40210 3.45562 3.47799 4.50238 4.55373 4.65552 4.81927 4.94004 5.03492 5.13798 5.14965 5.20813 5.25967 5.40154 5.49321 5.51360 5.55643 5.58263 5.62896 5.73138 5.74942 5.92958 5.95742 6.03635 6.08632 6.12363 6.14016 6.19526 6.29807 6.34529 6.37668 6.47463 6.66534 6.76595 6.95276 6.95860 6.96991 7.53011 7.58142 7.83389 7.85796 8.24016 8.54355 9.21085 9.81878 10.47782 11.40787 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.018346 B = 0.003070 C = 0.002844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.840670 B = 9117.663272 C = 9844.553730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.009 4.009 3 Si 0.911 3.089 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.226 4.226 8 H 0.079 0.921 9 N -0.603 5.603 10 C 0.138 3.862 11 C -0.111 4.111 12 H 0.075 0.925 13 C -0.110 4.110 14 C -0.130 4.130 15 C 0.105 3.895 16 N -0.588 5.588 17 C 0.509 3.491 18 O -0.547 6.547 19 C -0.132 4.132 20 C -0.035 4.035 21 C -0.176 4.176 22 C -0.208 4.208 23 C -0.047 4.047 24 O -0.180 6.180 25 C -0.040 4.040 26 C 0.116 3.884 27 H 0.091 0.909 28 C 0.178 3.822 29 H 0.251 0.749 30 H 0.019 0.981 31 H 0.044 0.956 32 H 0.081 0.919 33 H 0.055 0.945 34 H 0.070 0.930 35 H 0.060 0.940 36 H 0.076 0.924 37 H 0.080 0.920 38 H 0.092 0.908 39 H 0.090 0.910 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.147 0.853 43 H 0.200 0.800 44 H 0.202 0.798 45 H 0.050 0.950 46 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.432 -14.533 -7.779 20.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.205 4.205 3 Si 0.742 3.258 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.354 4.354 8 H 0.097 0.903 9 N -0.330 5.330 10 C 0.011 3.989 11 C -0.131 4.131 12 H 0.094 0.906 13 C -0.147 4.147 14 C -0.168 4.168 15 C -0.018 4.018 16 N -0.319 5.319 17 C 0.297 3.703 18 O -0.425 6.425 19 C -0.172 4.172 20 C -0.073 4.073 21 C -0.177 4.177 22 C -0.227 4.227 23 C -0.114 4.114 24 O -0.075 6.075 25 C -0.108 4.108 26 C 0.011 3.989 27 H 0.109 0.891 28 C 0.052 3.948 29 H 0.061 0.939 30 H 0.037 0.963 31 H 0.062 0.938 32 H 0.100 0.900 33 H 0.074 0.926 34 H 0.088 0.912 35 H 0.079 0.921 36 H 0.094 0.906 37 H 0.098 0.902 38 H 0.110 0.890 39 H 0.109 0.891 40 H 0.097 0.903 41 H 0.098 0.902 42 H 0.165 0.835 43 H 0.217 0.783 44 H 0.219 0.781 45 H 0.069 0.931 46 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -11.730 -14.218 -7.263 19.812 hybrid contribution 0.665 0.837 -0.033 1.069 sum -11.065 -13.382 -7.296 18.834 Atomic orbital electron populations 1.69980 1.04830 1.24833 1.57129 1.24802 0.95706 0.97635 1.02344 0.86057 0.78704 0.83872 0.77199 1.20540 1.21834 1.21800 1.19092 0.90407 0.82261 1.43650 0.90317 1.44453 1.01310 0.99938 1.87252 1.21741 0.94318 0.85983 0.96821 1.22598 0.96419 0.98291 0.95785 0.90646 1.21434 0.96232 1.02814 0.94237 1.21864 0.95699 0.99475 0.99811 1.21836 0.98731 1.01394 0.79832 1.47489 1.12160 1.65208 1.07057 1.20623 0.84337 0.76859 0.88433 1.90676 1.83645 1.53562 1.14595 1.21661 0.93297 1.03126 0.99069 1.19710 0.89281 1.02781 0.95542 1.20545 0.99007 0.93743 1.04393 1.21786 0.98435 0.99112 1.03410 1.23991 0.97985 0.84610 1.04859 1.84065 1.44890 1.21104 1.57467 1.23964 0.89731 0.98535 0.98543 1.21857 0.83143 0.99181 0.94689 0.89080 1.21240 0.84564 0.87572 1.01384 0.93867 0.96316 0.93819 0.90024 0.92638 0.91168 0.92077 0.90585 0.90173 0.88973 0.89129 0.90254 0.90171 0.83548 0.78348 0.78096 0.93143 0.93765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.02 10.33 55.49 0.57 -26.45 16 2 C -0.01 -0.24 5.49 -17.43 -0.10 -0.34 16 3 Si 0.91 22.11 29.55 -169.99 -5.02 17.08 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 6 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 7 C -0.23 -6.23 10.28 -15.06 -0.15 -6.39 16 8 H 0.08 2.10 7.83 -52.48 -0.41 1.69 16 9 N -0.60 -15.22 3.00 -169.86 -0.51 -15.73 16 10 C 0.14 2.84 6.53 -2.13 -0.01 2.82 16 11 C -0.11 -1.94 3.71 -88.58 -0.33 -2.27 16 12 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 13 C -0.11 -1.72 4.82 -26.89 -0.13 -1.85 16 14 C -0.13 -1.65 6.11 -26.63 -0.16 -1.81 16 15 C 0.10 1.43 6.08 -3.64 -0.02 1.41 16 16 N -0.59 -9.87 2.72 -165.41 -0.45 -10.32 16 17 C 0.51 8.41 7.66 -10.99 -0.08 8.33 16 18 O -0.55 -11.06 15.30 5.55 0.09 -10.97 16 19 C -0.13 -1.56 4.00 -27.88 -0.11 -1.67 16 20 C -0.04 -0.41 5.02 -27.88 -0.14 -0.55 16 21 C -0.18 -1.85 5.42 -104.75 -0.57 -2.42 16 22 C -0.21 -1.96 10.87 -39.71 -0.43 -2.39 16 23 C -0.05 -0.39 12.09 29.41 0.36 -0.04 16 24 O -0.18 -1.81 10.65 5.72 0.06 -1.75 16 25 C -0.04 -0.39 12.01 29.41 0.35 -0.04 16 26 C 0.12 2.29 2.93 -67.63 -0.20 2.10 16 27 H 0.09 1.98 6.95 -51.93 -0.36 1.62 16 28 C 0.18 4.36 4.56 -3.32 -0.02 4.35 16 29 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 30 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.04 0.86 7.99 -51.92 -0.41 0.44 16 32 H 0.08 1.56 7.27 -51.93 -0.38 1.18 16 33 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.08 1.17 7.54 -51.93 -0.39 0.78 16 37 H 0.08 0.84 5.82 -51.93 -0.30 0.54 16 38 H 0.09 1.00 7.93 -51.93 -0.41 0.59 16 39 H 0.09 0.91 7.62 -51.93 -0.40 0.52 16 40 H 0.08 0.98 8.10 -51.93 -0.42 0.56 16 41 H 0.08 1.01 8.10 -51.93 -0.42 0.59 16 42 H 0.15 1.15 8.06 -52.49 -0.42 0.73 16 43 H 0.20 0.91 8.06 -52.49 -0.42 0.49 16 44 H 0.20 1.48 8.06 -52.48 -0.42 1.05 16 45 H 0.05 1.34 6.52 -51.93 -0.34 1.00 16 46 H 0.04 1.26 7.52 -51.93 -0.39 0.87 16 LS Contribution 362.81 15.07 5.47 5.47 Total: -1.00 -33.14 362.81 -8.70 -41.84 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -7.15 Total: 1.59 kcal Atomic # 6 Polarization: 0.99 SS G_CDS: -1.75 Total: -0.76 kcal Atomic # 7 Polarization: -52.11 SS G_CDS: -0.39 Total: -52.49 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: 0.15 Total: -12.72 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.14 -8.70 -41.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050015485.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.765 kcal (2) G-P(sol) polarization free energy of solvation -33.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds