Wall clock time and date at job start Tue Mar 31 2020 12:25:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 120.00150 * 2 1 4 4 H 1.48498 * 109.47177 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47150 * 300.00322 * 3 2 1 6 6 H 1.48509 * 109.47015 * 60.00195 * 3 2 1 7 7 C 1.38814 * 119.99692 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99776 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00100 * 359.97438 * 7 2 1 10 10 C 1.47526 * 125.70028 * 180.02562 * 9 7 2 11 11 C 1.55532 * 104.68497 * 204.52487 * 10 9 7 12 12 H 1.09000 * 113.17114 * 202.06298 * 11 10 9 13 13 C 1.52947 * 107.01705 * 77.85770 * 11 10 9 14 14 C 1.52752 * 110.76401 * 195.20771 * 13 11 10 15 15 C 1.53449 * 108.47973 * 63.66494 * 14 13 11 16 16 N 1.46812 * 107.66982 * 302.06923 * 15 14 13 17 17 C 1.34774 * 119.61208 * 232.17619 * 16 15 14 18 18 O 1.21283 * 119.99834 * 179.97438 * 17 16 15 19 19 C 1.50699 * 120.00036 * 359.97438 * 17 16 15 20 20 C 1.53005 * 109.47363 * 180.02562 * 19 17 16 21 21 C 1.50699 * 109.47363 * 180.02562 * 20 19 17 22 22 C 1.41381 * 126.58183 * 89.99625 * 21 20 19 23 23 C 1.34505 * 106.84189 * 179.97438 * 22 21 20 24 24 O 1.34300 * 108.42149 * 0.02562 * 23 22 21 25 25 C 1.34301 * 109.47641 * 359.76718 * 24 23 22 26 26 C 1.45170 * 120.77536 * 52.17097 * 16 15 14 27 27 H 1.08999 * 109.70537 * 192.24116 * 26 16 15 28 28 C 1.47282 * 125.70153 * 359.97438 * 9 7 2 29 29 H 0.97004 * 119.99851 * 359.97438 * 1 2 3 30 30 H 1.08993 * 110.39638 * 85.72114 * 10 9 7 31 31 H 1.09010 * 110.39700 * 323.32041 * 10 9 7 32 32 H 1.08999 * 109.21983 * 315.54065 * 13 11 10 33 33 H 1.09006 * 109.21659 * 74.87635 * 13 11 10 34 34 H 1.08993 * 109.63441 * 183.36260 * 14 13 11 35 35 H 1.08999 * 109.63416 * 303.96810 * 14 13 11 36 36 H 1.08996 * 109.82413 * 61.61002 * 15 14 13 37 37 H 1.08995 * 109.82260 * 182.53056 * 15 14 13 38 38 H 1.09005 * 109.47465 * 300.00019 * 19 17 16 39 39 H 1.09007 * 109.47389 * 59.99875 * 19 17 16 40 40 H 1.08999 * 109.46503 * 300.00004 * 20 19 17 41 41 H 1.09001 * 109.46776 * 59.99938 * 20 19 17 42 42 H 1.08002 * 126.57797 * 0.02562 * 22 21 20 43 43 H 1.08001 * 125.79285 * 180.02562 * 23 22 21 44 44 H 1.08006 * 125.78940 * 180.23986 * 25 24 23 45 45 H 1.08997 * 109.99161 * 59.61858 * 28 9 7 46 46 H 1.09001 * 109.98481 * 298.29732 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 1.9325 -3.7326 -0.0005 11 6 0.8472 -4.6552 -0.6250 12 1 0.9704 -5.7046 -0.3571 13 6 0.8887 -4.4345 -2.1379 14 6 -0.3665 -4.9975 -2.8019 15 6 -1.5820 -4.2164 -2.2853 16 7 -1.6097 -4.3508 -0.8236 17 6 -2.7375 -4.7669 -0.2143 18 8 -2.7680 -4.8808 0.9928 19 6 -3.9607 -5.0906 -1.0329 20 6 -5.0928 -5.5349 -0.1044 21 6 -6.3158 -5.8593 -0.9230 22 6 -6.6524 -7.1176 -1.4728 23 6 -7.8191 -6.9592 -2.1232 24 8 -8.2045 -5.6789 -1.9977 25 6 -7.2991 -5.0082 -1.2668 26 6 -0.4364 -4.0408 -0.0269 27 1 -0.5775 -4.4030 0.9914 28 6 -0.1400 -2.5343 0.0005 29 1 -0.4850 0.8401 0.0004 30 1 2.1583 -4.0475 1.0182 31 1 2.8357 -3.7417 -0.6109 32 1 0.9546 -3.3660 -2.3430 33 1 1.7666 -4.9328 -2.5493 34 1 -0.2909 -4.8842 -3.8833 35 1 -0.4736 -6.0520 -2.5478 36 1 -1.4891 -3.1652 -2.5581 37 1 -2.4958 -4.6303 -2.7117 38 1 -4.2721 -4.2050 -1.5868 39 1 -3.7278 -5.8934 -1.7325 40 1 -4.7817 -6.4204 0.4498 41 1 -5.3256 -4.7318 0.5948 42 1 -6.0825 -8.0309 -1.3864 43 1 -8.3550 -7.7308 -2.6560 44 1 -7.3507 -3.9624 -1.0018 45 1 -0.5630 -2.0554 -0.8826 46 1 -0.5583 -2.0885 0.9030 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050015485.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:19 Heat of formation + Delta-G solvation = -15.943947 kcal Electronic energy + Delta-G solvation = -27247.277734 eV Core-core repulsion = 23524.240721 eV Total energy + Delta-G solvation = -3723.037012 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.39568 -41.66593 -39.55355 -36.79845 -35.80389 -34.49607 -33.45363 -32.43504 -31.11160 -30.08497 -28.98251 -27.20456 -26.12332 -24.99485 -23.21620 -22.41058 -22.16478 -21.32623 -20.80020 -19.34060 -18.91053 -18.59160 -17.80986 -17.16135 -16.80084 -16.67712 -16.48914 -16.02384 -15.51369 -15.33540 -15.23473 -14.96447 -14.59958 -14.30070 -14.05212 -13.78886 -13.60760 -13.55644 -13.26761 -13.16561 -13.08559 -12.94424 -12.87446 -12.75845 -12.41795 -12.09115 -12.07103 -11.87895 -11.78429 -11.66398 -11.49052 -11.16197 -10.80074 -10.73396 -10.49123 -9.52791 -9.38804 -8.92253 -7.85578 -5.22430 0.92461 1.43832 1.45452 1.55620 1.63407 1.69283 2.08297 2.37573 2.48597 3.33044 3.46051 3.67593 3.75240 3.92698 3.96173 4.00397 4.04830 4.10406 4.17755 4.22084 4.28043 4.38701 4.47410 4.55356 4.60689 4.67787 4.79812 4.85076 4.88601 4.89578 4.95727 4.96163 5.10714 5.14199 5.20446 5.26909 5.29639 5.38313 5.40630 5.45571 5.59089 5.62445 5.65143 5.81147 6.14827 6.27077 6.50930 7.05763 7.21975 7.73944 8.39381 9.24207 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.018346 B = 0.003070 C = 0.002844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.840670 B = 9117.663272 C = 9844.553730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.068 4.068 3 Si 0.979 3.021 4 H -0.263 1.263 5 H -0.290 1.290 6 H -0.297 1.297 7 C -0.237 4.237 8 H 0.086 0.914 9 N -0.621 5.621 10 C 0.130 3.870 11 C -0.093 4.093 12 H 0.106 0.894 13 C -0.107 4.107 14 C -0.121 4.121 15 C 0.100 3.900 16 N -0.591 5.591 17 C 0.502 3.498 18 O -0.592 6.592 19 C -0.118 4.118 20 C -0.028 4.028 21 C -0.190 4.190 22 C -0.224 4.224 23 C -0.040 4.040 24 O -0.191 6.191 25 C -0.048 4.048 26 C 0.127 3.873 27 H 0.066 0.934 28 C 0.198 3.802 29 H 0.244 0.756 30 H 0.017 0.983 31 H 0.057 0.943 32 H 0.041 0.959 33 H 0.080 0.920 34 H 0.099 0.901 35 H 0.082 0.918 36 H 0.051 0.949 37 H 0.122 0.878 38 H 0.107 0.893 39 H 0.122 0.878 40 H 0.069 0.931 41 H 0.062 0.938 42 H 0.160 0.840 43 H 0.235 0.765 44 H 0.217 0.783 45 H 0.024 0.976 46 H -0.014 1.014 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.529 -16.771 -10.323 22.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.261 4.261 3 Si 0.808 3.192 4 H -0.187 1.187 5 H -0.217 1.217 6 H -0.224 1.224 7 C -0.366 4.366 8 H 0.104 0.896 9 N -0.348 5.348 10 C 0.005 3.995 11 C -0.113 4.113 12 H 0.124 0.876 13 C -0.144 4.144 14 C -0.158 4.158 15 C -0.021 4.021 16 N -0.321 5.321 17 C 0.293 3.707 18 O -0.473 6.473 19 C -0.157 4.157 20 C -0.066 4.066 21 C -0.191 4.191 22 C -0.243 4.243 23 C -0.107 4.107 24 O -0.087 6.087 25 C -0.115 4.115 26 C 0.021 3.979 27 H 0.084 0.916 28 C 0.071 3.929 29 H 0.054 0.946 30 H 0.035 0.965 31 H 0.076 0.924 32 H 0.060 0.940 33 H 0.098 0.902 34 H 0.118 0.882 35 H 0.101 0.899 36 H 0.070 0.930 37 H 0.140 0.860 38 H 0.125 0.875 39 H 0.140 0.860 40 H 0.087 0.913 41 H 0.080 0.920 42 H 0.177 0.823 43 H 0.252 0.748 44 H 0.233 0.767 45 H 0.042 0.958 46 H 0.004 0.996 Dipole moment (debyes) X Y Z Total from point charges -11.804 -16.490 -9.840 22.541 hybrid contribution 0.697 1.519 0.818 1.860 sum -11.107 -14.972 -9.022 20.710 Atomic orbital electron populations 1.70224 1.06389 1.24993 1.58493 1.25673 0.96569 1.01104 1.02767 0.84994 0.78278 0.79399 0.76569 1.18740 1.21707 1.22437 1.19508 0.91025 0.83446 1.42595 0.89591 1.44716 1.01810 1.01297 1.86947 1.21968 0.95777 0.84454 0.97305 1.22582 0.92947 0.98811 0.96987 0.87566 1.21388 0.99299 1.00819 0.92916 1.21852 0.92878 0.99963 1.01136 1.22107 1.01622 1.00727 0.77693 1.47608 1.11291 1.64836 1.08371 1.21541 0.85179 0.75686 0.88306 1.90655 1.84347 1.55428 1.16894 1.21665 0.90637 1.04709 0.98695 1.19551 0.89986 1.01678 0.95416 1.20495 0.98800 0.94827 1.05011 1.22018 0.99281 0.99127 1.03899 1.24703 0.97658 0.84425 1.03916 1.84082 1.45061 1.21997 1.57511 1.24294 0.89521 0.99306 0.98359 1.21386 0.85990 0.95698 0.94785 0.91569 1.20821 0.84250 0.90586 0.97208 0.94645 0.96474 0.92440 0.94024 0.90177 0.88236 0.89913 0.93030 0.86036 0.87462 0.86039 0.91256 0.91962 0.82254 0.74849 0.76664 0.95815 0.99593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.88 10.33 21.65 0.22 -58.66 16 2 C -0.07 -3.97 5.49 84.86 0.47 -3.50 16 3 Si 0.98 46.57 29.55 68.60 2.03 48.59 16 4 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 5 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 6 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 7 C -0.24 -13.43 10.28 84.03 0.86 -12.57 16 8 H 0.09 4.62 7.83 -2.91 -0.02 4.60 16 9 N -0.62 -32.55 3.00 -691.31 -2.07 -34.62 16 10 C 0.13 5.36 6.53 87.06 0.57 5.93 16 11 C -0.09 -3.16 3.71 -9.47 -0.04 -3.19 16 12 H 0.11 3.02 8.14 -2.39 -0.02 3.00 16 13 C -0.11 -3.11 4.82 30.49 0.15 -2.96 16 14 C -0.12 -2.59 6.11 30.66 0.19 -2.40 16 15 C 0.10 2.52 6.08 86.47 0.53 3.04 16 16 N -0.59 -19.66 2.72 -795.62 -2.16 -21.82 16 17 C 0.50 16.55 7.66 87.66 0.67 17.22 16 18 O -0.59 -24.87 15.30 -3.04 -0.05 -24.92 16 19 C -0.12 -2.57 4.00 29.85 0.12 -2.45 16 20 C -0.03 -0.65 5.02 29.85 0.15 -0.50 16 21 C -0.19 -3.72 5.42 -19.94 -0.11 -3.83 16 22 C -0.22 -3.67 10.87 22.19 0.24 -3.43 16 23 C -0.04 -0.56 12.09 66.96 0.81 0.25 16 24 O -0.19 -3.45 10.65 -2.44 -0.03 -3.48 16 25 C -0.05 -0.86 12.01 66.97 0.80 -0.06 16 26 C 0.13 5.19 2.93 45.89 0.13 5.33 16 27 H 0.07 3.02 6.95 -2.39 -0.02 3.01 16 28 C 0.20 10.32 4.56 86.42 0.39 10.71 16 29 H 0.24 14.74 8.31 -92.71 -0.77 13.96 16 30 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.06 2.20 7.99 -2.38 -0.02 2.18 16 32 H 0.04 1.57 7.27 -2.39 -0.02 1.55 16 33 H 0.08 1.97 8.14 -2.38 -0.02 1.95 16 34 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.05 1.57 7.54 -2.39 -0.02 1.55 16 37 H 0.12 2.05 5.82 -2.39 -0.01 2.04 16 38 H 0.11 2.08 7.93 -2.38 -0.02 2.06 16 39 H 0.12 1.96 7.62 -2.38 -0.02 1.94 16 40 H 0.07 1.71 8.10 -2.39 -0.02 1.69 16 41 H 0.06 1.62 8.10 -2.39 -0.02 1.60 16 42 H 0.16 2.08 8.06 -2.91 -0.02 2.06 16 43 H 0.24 1.23 8.06 -2.91 -0.02 1.21 16 44 H 0.22 2.96 8.06 -2.91 -0.02 2.94 16 45 H 0.02 1.35 6.52 -2.39 -0.02 1.33 16 46 H -0.01 -0.89 7.52 -2.39 -0.02 -0.90 16 Total: -1.00 -78.09 362.81 4.85 -73.24 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: 0.97 Total: 14.07 kcal Atomic # 6 Polarization: 1.65 SS G_CDS: 5.94 Total: 7.59 kcal Atomic # 7 Polarization: -111.09 SS G_CDS: -4.01 Total: -115.10 kcal Atomic # 8 Polarization: -28.33 SS G_CDS: -0.07 Total: -28.40 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 2.03 Total: 48.59 kcal Total: -78.09 4.85 -73.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050015485.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.300 kcal (2) G-P(sol) polarization free energy of solvation -78.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds