Wall clock time and date at job start Tue Mar 31 2020 12:09:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86808 * 119.99937 * 2 1 4 4 H 1.48499 * 109.47118 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46917 * 299.99708 * 3 2 1 6 6 H 1.48498 * 109.46869 * 59.99841 * 3 2 1 7 7 C 1.38813 * 120.00466 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00309 * 197.66071 * 7 2 1 9 9 N 1.36945 * 119.99436 * 17.66101 * 7 2 1 10 10 C 1.46888 * 120.46245 * 28.44421 * 9 7 2 11 11 C 1.53355 * 108.74043 * 124.38610 * 10 9 7 12 12 C 1.52550 * 109.12879 * 52.25578 * 11 10 9 13 13 C 1.52964 * 114.06202 * 75.54466 * 12 11 10 14 14 N 1.47166 * 87.85637 * 139.44002 * 13 12 11 15 15 C 1.34772 * 136.00132 * 153.33830 * 14 13 12 16 16 O 1.21271 * 120.00374 * 0.02562 * 15 14 13 17 17 C 1.50701 * 119.99860 * 179.97438 * 15 14 13 18 18 C 1.52998 * 109.47179 * 179.97438 * 17 15 14 19 19 C 1.50701 * 109.47179 * 179.97438 * 18 17 15 20 20 C 1.34514 * 125.79075 * 89.71779 * 19 18 17 21 21 C 1.41380 * 106.84625 * 179.89078 * 20 19 18 22 22 C 1.34518 * 106.83344 * 0.36911 * 21 20 19 23 23 O 1.34298 * 108.42456 * 359.77542 * 22 21 20 24 24 C 1.47174 * 87.99793 * 333.33696 * 14 13 12 25 25 C 1.52548 * 113.43620 * 302.67104 * 12 11 10 26 26 C 1.46883 * 120.45917 * 208.46414 * 9 7 2 27 27 H 0.97003 * 120.00319 * 0.02562 * 1 2 3 28 28 H 1.08997 * 109.59420 * 4.60986 * 10 9 7 29 29 H 1.09001 * 109.59180 * 244.16135 * 10 9 7 30 30 H 1.09005 * 109.52834 * 292.36085 * 11 10 9 31 31 H 1.09001 * 109.53166 * 172.15274 * 11 10 9 32 32 H 1.09006 * 113.48895 * 24.69532 * 13 12 11 33 33 H 1.08998 * 113.48720 * 254.18686 * 13 12 11 34 34 H 1.09001 * 109.47612 * 300.00156 * 17 15 14 35 35 H 1.08998 * 109.47338 * 60.00003 * 17 15 14 36 36 H 1.08998 * 109.47541 * 300.00304 * 18 17 15 37 37 H 1.09004 * 109.46915 * 60.00599 * 18 17 15 38 38 H 1.08008 * 126.57711 * 0.02562 * 20 19 18 39 39 H 1.07989 * 126.58384 * 180.16817 * 21 20 19 40 40 H 1.08004 * 125.78260 * 179.79408 * 22 21 20 41 41 H 1.08991 * 113.48779 * 141.41491 * 24 14 13 42 42 H 1.09002 * 113.48610 * 271.92357 * 24 14 13 43 43 H 1.09000 * 109.53277 * 177.20809 * 25 12 11 44 44 H 1.09005 * 109.52956 * 297.42319 * 25 12 11 45 45 H 1.09001 * 109.59466 * 355.38541 * 26 9 7 46 46 H 1.08996 * 109.59057 * 115.82935 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0521 -1.2240 0.2843 9 7 1.3740 -2.3603 -0.3588 10 6 0.2450 -2.3291 -1.2979 11 6 0.5545 -3.2663 -2.4717 12 6 0.9421 -4.6378 -1.9275 13 6 -0.2403 -5.4631 -1.4170 14 7 0.3860 -6.6418 -2.0367 15 6 0.3728 -7.9722 -1.8220 16 8 -0.2878 -8.4336 -0.9156 17 6 1.1778 -8.8867 -2.7089 18 6 0.9895 -10.3350 -2.2531 19 6 1.7941 -11.2496 -3.1405 20 6 3.0701 -11.6226 -2.9351 21 6 3.4231 -12.4800 -4.0023 22 6 2.3443 -12.5732 -4.8004 23 8 1.3607 -11.8259 -4.2735 24 6 1.0333 -5.7303 -2.9940 25 6 2.1313 -4.5978 -0.9730 26 6 1.8107 -3.6509 0.1900 27 1 -0.4851 0.8400 -0.0004 28 1 0.1054 -1.3135 -1.6682 29 1 -0.6607 -2.6638 -0.7920 30 1 1.3803 -2.8591 -3.0551 31 1 -0.3279 -3.3615 -3.1045 32 1 -1.1916 -5.1870 -1.8719 33 1 -0.2929 -5.5203 -0.3298 34 1 0.8399 -8.7831 -3.7400 35 1 2.2327 -8.6200 -2.6438 36 1 1.3277 -10.4385 -1.2221 37 1 -0.0653 -10.6021 -2.3180 38 1 3.7028 -11.3258 -2.1116 39 1 4.3769 -12.9643 -4.1503 40 1 2.2800 -13.1513 -5.7105 41 1 2.0568 -6.0135 -3.2394 42 1 0.4279 -5.5267 -3.8773 43 1 2.3216 -5.5988 -0.5858 44 1 3.0126 -4.2376 -1.5037 45 1 2.7024 -3.5059 0.7998 46 1 1.0139 -4.0772 0.7994 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050429591.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:24 Heat of formation + Delta-G solvation = 33.588381 kcal Electronic energy + Delta-G solvation = -26441.550322 eV Core-core repulsion = 22720.661192 eV Total energy + Delta-G solvation = -3720.889130 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.81240 -40.78547 -38.54531 -35.93429 -34.25000 -33.03708 -32.50249 -30.75315 -29.89837 -29.13257 -27.16182 -26.15903 -24.47865 -23.77234 -22.39097 -22.00515 -20.95446 -20.56084 -19.09058 -18.03875 -17.72920 -16.89796 -16.44332 -16.32344 -15.93066 -15.57704 -15.00424 -14.86287 -14.43065 -13.98874 -13.63163 -13.58349 -13.29149 -13.09246 -13.04796 -12.88979 -12.69068 -12.59571 -12.36263 -12.16322 -11.87315 -11.58269 -11.43913 -11.32196 -11.09318 -10.75741 -10.49147 -10.32422 -10.18764 -10.11064 -9.93623 -9.81519 -9.64214 -9.38737 -8.71797 -8.58570 -8.47854 -6.68256 -5.81159 -3.23766 1.45248 2.34321 2.63812 2.68460 2.97680 3.35419 3.43923 3.45793 4.23824 4.47634 4.53504 4.62596 4.69655 4.73917 4.79097 4.92054 5.06554 5.20299 5.25453 5.36507 5.43677 5.48117 5.50760 5.55749 5.57407 5.64040 5.68158 5.73827 5.83097 5.90237 5.93211 6.04929 6.07459 6.24532 6.24801 6.43109 6.54955 6.59351 6.63462 6.79446 6.88523 6.93917 7.30719 7.62418 7.78382 7.83113 8.16793 8.43730 9.19557 9.82897 10.39160 11.26982 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.031939 B = 0.002295 C = 0.002248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.462899 B =12197.247070 C =12450.816206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.002 3.998 3 Si 0.900 3.100 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.291 1.291 7 C -0.252 4.252 8 H 0.065 0.935 9 N -0.591 5.591 10 C 0.171 3.829 11 C -0.125 4.125 12 C -0.075 4.075 13 C 0.113 3.887 14 N -0.642 5.642 15 C 0.540 3.460 16 O -0.547 6.547 17 C -0.130 4.130 18 C -0.024 4.024 19 C -0.007 4.007 20 C -0.211 4.211 21 C -0.213 4.213 22 C -0.046 4.046 23 O -0.176 6.176 24 C 0.100 3.900 25 C -0.105 4.105 26 C 0.147 3.853 27 H 0.253 0.747 28 H 0.090 0.910 29 H 0.018 0.982 30 H 0.063 0.937 31 H 0.053 0.947 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.094 0.906 35 H 0.097 0.903 36 H 0.103 0.897 37 H 0.089 0.911 38 H 0.148 0.852 39 H 0.147 0.853 40 H 0.201 0.799 41 H 0.074 0.926 42 H 0.084 0.916 43 H 0.051 0.949 44 H 0.064 0.936 45 H 0.055 0.945 46 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.206 -20.227 -10.752 23.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.197 4.197 3 Si 0.730 3.270 4 H -0.203 1.203 5 H -0.216 1.216 6 H -0.218 1.218 7 C -0.381 4.381 8 H 0.083 0.917 9 N -0.313 5.313 10 C 0.045 3.955 11 C -0.164 4.164 12 C -0.076 4.076 13 C -0.008 4.008 14 N -0.377 5.377 15 C 0.330 3.670 16 O -0.425 6.425 17 C -0.170 4.170 18 C -0.062 4.062 19 C -0.057 4.057 20 C -0.230 4.230 21 C -0.232 4.232 22 C -0.114 4.114 23 O -0.072 6.072 24 C -0.023 4.023 25 C -0.145 4.145 26 C 0.020 3.980 27 H 0.063 0.937 28 H 0.108 0.892 29 H 0.037 0.963 30 H 0.081 0.919 31 H 0.072 0.928 32 H 0.101 0.899 33 H 0.097 0.903 34 H 0.112 0.888 35 H 0.115 0.885 36 H 0.121 0.879 37 H 0.108 0.892 38 H 0.166 0.834 39 H 0.165 0.835 40 H 0.218 0.782 41 H 0.093 0.907 42 H 0.102 0.898 43 H 0.070 0.930 44 H 0.083 0.917 45 H 0.074 0.926 46 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 3.459 -20.528 -10.320 23.235 hybrid contribution 0.672 0.712 -0.185 0.996 sum 4.130 -19.816 -10.505 22.805 Atomic orbital electron populations 1.70037 1.05259 1.25419 1.53867 1.25044 0.95258 0.98435 1.00923 0.86254 0.79409 0.84029 0.77270 1.20270 1.21561 1.21775 1.19221 0.92804 0.84898 1.41214 0.91697 1.44037 1.37103 1.01472 1.48710 1.20790 0.88760 0.98651 0.87320 1.22074 1.00172 0.94003 1.00200 1.21703 0.96170 0.94324 0.95423 1.23081 0.96924 0.80735 1.00108 1.49708 1.49168 1.04105 1.34703 1.20025 0.81748 0.80375 0.84883 1.90709 1.44110 1.74515 1.33211 1.21579 1.01754 0.93365 1.00289 1.19858 1.00295 0.89455 0.96583 1.22486 0.94907 1.00060 0.88290 1.21652 0.95813 1.03271 1.02236 1.21850 1.00498 1.03996 0.96889 1.24030 0.86979 0.99396 1.00982 1.84028 1.39869 1.50090 1.33249 1.23284 0.97980 0.87175 0.93870 1.21704 0.95764 0.99318 0.97687 1.20884 0.97616 0.86899 0.92586 0.93670 0.89165 0.96341 0.91866 0.92824 0.89948 0.90305 0.88752 0.88503 0.87886 0.89234 0.83378 0.83497 0.78192 0.90719 0.89806 0.93020 0.91708 0.92624 0.96382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.49 11.21 55.49 0.62 -24.87 16 2 C 0.00 0.05 4.89 -17.43 -0.09 -0.03 16 3 Si 0.90 21.18 29.59 -169.99 -5.03 16.15 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 7 C -0.25 -6.68 9.56 -15.06 -0.14 -6.82 16 8 H 0.07 1.71 7.89 -52.49 -0.41 1.29 16 9 N -0.59 -14.09 2.96 -172.18 -0.51 -14.60 16 10 C 0.17 3.79 5.27 -3.65 -0.02 3.77 16 11 C -0.12 -2.09 5.30 -26.78 -0.14 -2.23 16 12 C -0.08 -1.12 0.84 -155.02 -0.13 -1.25 16 13 C 0.11 1.72 7.56 -8.19 -0.06 1.66 16 14 N -0.64 -8.83 3.46 -185.07 -0.64 -9.47 16 15 C 0.54 7.56 8.08 -10.99 -0.09 7.47 16 16 O -0.55 -9.63 16.76 5.57 0.09 -9.54 16 17 C -0.13 -1.31 5.51 -27.88 -0.15 -1.47 16 18 C -0.02 -0.24 5.04 -27.88 -0.14 -0.39 16 19 C -0.01 -0.07 6.58 -35.62 -0.23 -0.31 16 20 C -0.21 -1.98 10.81 -39.70 -0.43 -2.41 16 21 C -0.21 -1.78 10.91 -39.70 -0.43 -2.21 16 22 C -0.05 -0.37 12.09 29.42 0.36 -0.01 16 23 O -0.18 -1.83 10.65 5.73 0.06 -1.77 16 24 C 0.10 1.18 7.58 -8.20 -0.06 1.12 16 25 C -0.11 -1.71 5.27 -26.78 -0.14 -1.85 16 26 C 0.15 2.96 6.41 -3.65 -0.02 2.93 16 27 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 28 H 0.09 2.28 5.97 -51.93 -0.31 1.97 16 29 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 31 H 0.05 0.79 8.09 -51.93 -0.42 0.37 16 32 H 0.08 1.19 8.06 -51.93 -0.42 0.77 16 33 H 0.08 1.34 7.53 -51.93 -0.39 0.95 16 34 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.10 1.03 8.10 -51.93 -0.42 0.61 16 37 H 0.09 0.95 8.10 -51.93 -0.42 0.53 16 38 H 0.15 1.19 8.06 -52.48 -0.42 0.76 16 39 H 0.15 0.90 8.06 -52.49 -0.42 0.48 16 40 H 0.20 0.83 8.06 -52.48 -0.42 0.41 16 41 H 0.07 0.77 8.11 -51.93 -0.42 0.35 16 42 H 0.08 0.87 8.09 -51.93 -0.42 0.45 16 43 H 0.05 0.79 7.95 -51.93 -0.41 0.37 16 44 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 45 H 0.06 1.12 7.92 -51.93 -0.41 0.70 16 46 H 0.02 0.38 7.60 -51.93 -0.39 -0.01 16 LS Contribution 374.23 15.07 5.64 5.64 Total: -1.00 -31.62 374.23 -9.07 -40.69 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: -7.37 Total: -0.19 kcal Atomic # 6 Polarization: -0.11 SS G_CDS: -1.93 Total: -2.04 kcal Atomic # 7 Polarization: -48.41 SS G_CDS: -0.53 Total: -48.94 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: 0.15 Total: -11.31 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.03 Total: 16.15 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.62 -9.07 -40.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050429591.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.280 kcal (2) G-P(sol) polarization free energy of solvation -31.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.692 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds