Wall clock time and date at job start Tue Mar 31 2020 12:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86808 * 119.99937 * 2 1 4 4 H 1.48499 * 109.47118 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46917 * 299.99708 * 3 2 1 6 6 H 1.48498 * 109.46869 * 59.99841 * 3 2 1 7 7 C 1.38813 * 120.00466 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00309 * 197.66071 * 7 2 1 9 9 N 1.36945 * 119.99436 * 17.66101 * 7 2 1 10 10 C 1.46888 * 120.46245 * 28.44421 * 9 7 2 11 11 C 1.53355 * 108.74043 * 124.38610 * 10 9 7 12 12 C 1.52550 * 109.12879 * 52.25578 * 11 10 9 13 13 C 1.52964 * 114.06202 * 75.54466 * 12 11 10 14 14 N 1.47166 * 87.85637 * 139.44002 * 13 12 11 15 15 C 1.34772 * 136.00132 * 153.33830 * 14 13 12 16 16 O 1.21271 * 120.00374 * 0.02562 * 15 14 13 17 17 C 1.50701 * 119.99860 * 179.97438 * 15 14 13 18 18 C 1.52998 * 109.47179 * 179.97438 * 17 15 14 19 19 C 1.50701 * 109.47179 * 179.97438 * 18 17 15 20 20 C 1.34514 * 125.79075 * 89.71779 * 19 18 17 21 21 C 1.41380 * 106.84625 * 179.89078 * 20 19 18 22 22 C 1.34518 * 106.83344 * 0.36911 * 21 20 19 23 23 O 1.34298 * 108.42456 * 359.77542 * 22 21 20 24 24 C 1.47174 * 87.99793 * 333.33696 * 14 13 12 25 25 C 1.52548 * 113.43620 * 302.67104 * 12 11 10 26 26 C 1.46883 * 120.45917 * 208.46414 * 9 7 2 27 27 H 0.97003 * 120.00319 * 0.02562 * 1 2 3 28 28 H 1.08997 * 109.59420 * 4.60986 * 10 9 7 29 29 H 1.09001 * 109.59180 * 244.16135 * 10 9 7 30 30 H 1.09005 * 109.52834 * 292.36085 * 11 10 9 31 31 H 1.09001 * 109.53166 * 172.15274 * 11 10 9 32 32 H 1.09006 * 113.48895 * 24.69532 * 13 12 11 33 33 H 1.08998 * 113.48720 * 254.18686 * 13 12 11 34 34 H 1.09001 * 109.47612 * 300.00156 * 17 15 14 35 35 H 1.08998 * 109.47338 * 60.00003 * 17 15 14 36 36 H 1.08998 * 109.47541 * 300.00304 * 18 17 15 37 37 H 1.09004 * 109.46915 * 60.00599 * 18 17 15 38 38 H 1.08008 * 126.57711 * 0.02562 * 20 19 18 39 39 H 1.07989 * 126.58384 * 180.16817 * 21 20 19 40 40 H 1.08004 * 125.78260 * 179.79408 * 22 21 20 41 41 H 1.08991 * 113.48779 * 141.41491 * 24 14 13 42 42 H 1.09002 * 113.48610 * 271.92357 * 24 14 13 43 43 H 1.09000 * 109.53277 * 177.20809 * 25 12 11 44 44 H 1.09005 * 109.52956 * 297.42319 * 25 12 11 45 45 H 1.09001 * 109.59466 * 355.38541 * 26 9 7 46 46 H 1.08996 * 109.59057 * 115.82935 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0521 -1.2240 0.2843 9 7 1.3740 -2.3603 -0.3588 10 6 0.2450 -2.3291 -1.2979 11 6 0.5545 -3.2663 -2.4717 12 6 0.9421 -4.6378 -1.9275 13 6 -0.2403 -5.4631 -1.4170 14 7 0.3860 -6.6418 -2.0367 15 6 0.3728 -7.9722 -1.8220 16 8 -0.2878 -8.4336 -0.9156 17 6 1.1778 -8.8867 -2.7089 18 6 0.9895 -10.3350 -2.2531 19 6 1.7941 -11.2496 -3.1405 20 6 3.0701 -11.6226 -2.9351 21 6 3.4231 -12.4800 -4.0023 22 6 2.3443 -12.5732 -4.8004 23 8 1.3607 -11.8259 -4.2735 24 6 1.0333 -5.7303 -2.9940 25 6 2.1313 -4.5978 -0.9730 26 6 1.8107 -3.6509 0.1900 27 1 -0.4851 0.8400 -0.0004 28 1 0.1054 -1.3135 -1.6682 29 1 -0.6607 -2.6638 -0.7920 30 1 1.3803 -2.8591 -3.0551 31 1 -0.3279 -3.3615 -3.1045 32 1 -1.1916 -5.1870 -1.8719 33 1 -0.2929 -5.5203 -0.3298 34 1 0.8399 -8.7831 -3.7400 35 1 2.2327 -8.6200 -2.6438 36 1 1.3277 -10.4385 -1.2221 37 1 -0.0653 -10.6021 -2.3180 38 1 3.7028 -11.3258 -2.1116 39 1 4.3769 -12.9643 -4.1503 40 1 2.2800 -13.1513 -5.7105 41 1 2.0568 -6.0135 -3.2394 42 1 0.4279 -5.5267 -3.8773 43 1 2.3216 -5.5988 -0.5858 44 1 3.0126 -4.2376 -1.5037 45 1 2.7024 -3.5059 0.7998 46 1 1.0139 -4.0772 0.7994 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050429591.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:23 Heat of formation + Delta-G solvation = 15.727825 kcal Electronic energy + Delta-G solvation = -26442.324814 eV Core-core repulsion = 22720.661192 eV Total energy + Delta-G solvation = -3721.663621 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -43.46526 -41.95849 -39.74422 -37.55942 -35.06658 -34.25865 -33.68694 -32.28315 -31.44417 -30.08616 -28.45825 -27.25054 -26.01660 -24.84091 -23.93515 -22.64316 -22.54493 -21.25228 -20.26324 -19.46654 -18.53962 -18.27363 -17.59914 -17.17039 -17.03707 -16.80726 -16.50789 -15.96178 -15.64561 -15.32968 -15.21080 -14.89448 -14.59847 -14.34352 -13.92539 -13.83375 -13.71000 -13.51585 -13.40504 -13.23881 -13.05708 -13.02051 -12.91523 -12.77702 -12.57270 -12.22364 -12.09893 -11.99179 -11.79323 -11.37360 -11.26335 -11.14517 -10.84631 -10.75082 -10.48318 -9.71246 -9.36233 -8.63118 -7.84537 -5.30076 0.79726 1.47709 1.50190 1.57738 1.60234 1.69627 1.85170 2.17247 2.53573 3.24887 3.34789 3.45407 3.71546 3.85019 3.87731 3.94783 4.04145 4.09967 4.18097 4.27975 4.33205 4.44349 4.51370 4.51793 4.62469 4.63592 4.72419 4.75094 4.82438 4.85487 4.94324 4.96137 4.99193 5.04996 5.09060 5.15766 5.22298 5.26673 5.37662 5.39047 5.56736 5.64286 5.68863 5.83220 6.24163 6.43130 6.77446 7.08589 7.18917 7.90371 8.41068 9.21046 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.031939 B = 0.002295 C = 0.002248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.462899 B =12197.247070 C =12450.816206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.051 4.051 3 Si 0.964 3.036 4 H -0.267 1.267 5 H -0.288 1.288 6 H -0.297 1.297 7 C -0.259 4.259 8 H 0.065 0.935 9 N -0.608 5.608 10 C 0.175 3.825 11 C -0.108 4.108 12 C -0.079 4.079 13 C 0.107 3.893 14 N -0.642 5.642 15 C 0.536 3.464 16 O -0.592 6.592 17 C -0.116 4.116 18 C -0.019 4.019 19 C -0.026 4.026 20 C -0.216 4.216 21 C -0.227 4.227 22 C -0.044 4.044 23 O -0.194 6.194 24 C 0.118 3.882 25 C -0.091 4.091 26 C 0.143 3.857 27 H 0.249 0.751 28 H 0.056 0.944 29 H -0.007 1.007 30 H 0.067 0.933 31 H 0.079 0.921 32 H 0.090 0.910 33 H 0.050 0.950 34 H 0.112 0.888 35 H 0.116 0.884 36 H 0.098 0.902 37 H 0.077 0.923 38 H 0.157 0.843 39 H 0.167 0.833 40 H 0.236 0.764 41 H 0.102 0.898 42 H 0.110 0.890 43 H 0.064 0.936 44 H 0.073 0.927 45 H 0.051 0.949 46 H 0.003 0.997 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.095 -21.745 -13.333 26.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.246 4.246 3 Si 0.793 3.207 4 H -0.191 1.191 5 H -0.215 1.215 6 H -0.224 1.224 7 C -0.389 4.389 8 H 0.083 0.917 9 N -0.331 5.331 10 C 0.049 3.951 11 C -0.148 4.148 12 C -0.080 4.080 13 C -0.015 4.015 14 N -0.376 5.376 15 C 0.327 3.673 16 O -0.473 6.473 17 C -0.155 4.155 18 C -0.057 4.057 19 C -0.076 4.076 20 C -0.236 4.236 21 C -0.246 4.246 22 C -0.111 4.111 23 O -0.091 6.091 24 C -0.003 4.003 25 C -0.130 4.130 26 C 0.017 3.983 27 H 0.058 0.942 28 H 0.074 0.926 29 H 0.011 0.989 30 H 0.085 0.915 31 H 0.098 0.902 32 H 0.108 0.892 33 H 0.068 0.932 34 H 0.130 0.870 35 H 0.135 0.865 36 H 0.116 0.884 37 H 0.095 0.905 38 H 0.175 0.825 39 H 0.185 0.815 40 H 0.252 0.748 41 H 0.121 0.879 42 H 0.128 0.872 43 H 0.083 0.917 44 H 0.091 0.909 45 H 0.069 0.931 46 H 0.021 0.979 Dipole moment (debyes) X Y Z Total from point charges 5.380 -22.066 -12.925 26.132 hybrid contribution 0.068 1.127 0.698 1.328 sum 5.449 -20.938 -12.227 24.852 Atomic orbital electron populations 1.70190 1.06640 1.25714 1.55511 1.25772 0.95983 1.01424 1.01455 0.85254 0.78704 0.80074 0.76684 1.19090 1.21480 1.22395 1.19528 0.92981 0.86105 1.40286 0.91741 1.44311 1.37277 1.01998 1.49557 1.20631 0.87587 0.98126 0.88750 1.21832 1.01457 0.93547 0.97922 1.21590 0.95388 0.94198 0.96776 1.23052 0.97711 0.82103 0.98677 1.49767 1.48939 1.03986 1.34933 1.20744 0.81356 0.80538 0.84615 1.90692 1.46092 1.75271 1.35284 1.21546 1.01980 0.92069 0.99939 1.19731 0.99612 0.89780 0.96554 1.22429 0.95232 1.01098 0.88809 1.21932 0.95721 1.03150 1.02753 1.22182 1.01624 1.04136 0.96651 1.24789 0.86212 0.98434 1.01634 1.84017 1.40913 1.50671 1.33474 1.23287 0.99987 0.84149 0.92913 1.21498 0.96618 0.98567 0.96272 1.20991 0.96724 0.86344 0.94235 0.94168 0.92609 0.98853 0.91452 0.90238 0.89181 0.93178 0.87020 0.86550 0.88393 0.90471 0.82488 0.81544 0.74825 0.87930 0.87172 0.91702 0.90869 0.93069 0.97916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.58 11.21 21.65 0.24 -54.34 16 2 C -0.05 -2.80 4.89 84.86 0.42 -2.39 16 3 Si 0.96 44.16 29.59 68.60 2.03 46.19 16 4 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 5 H -0.29 -13.05 7.11 99.48 0.71 -12.35 16 6 H -0.30 -13.77 7.11 99.48 0.71 -13.06 16 7 C -0.26 -13.93 9.56 84.03 0.80 -13.12 16 8 H 0.06 3.40 7.89 -2.91 -0.02 3.38 16 9 N -0.61 -29.54 2.96 -698.66 -2.07 -31.60 16 10 C 0.17 7.92 5.27 86.42 0.46 8.37 16 11 C -0.11 -3.44 5.30 30.56 0.16 -3.28 16 12 C -0.08 -2.17 0.84 -52.51 -0.04 -2.21 16 13 C 0.11 3.17 7.56 83.33 0.63 3.80 16 14 N -0.64 -16.15 3.46 -857.83 -2.97 -19.12 16 15 C 0.54 14.14 8.08 87.66 0.71 14.84 16 16 O -0.59 -20.88 16.76 -3.00 -0.05 -20.93 16 17 C -0.12 -2.04 5.51 29.85 0.16 -1.87 16 18 C -0.02 -0.36 5.04 29.85 0.15 -0.21 16 19 C -0.03 -0.49 6.58 24.83 0.16 -0.32 16 20 C -0.22 -3.65 10.81 22.19 0.24 -3.41 16 21 C -0.23 -3.20 10.91 22.19 0.24 -2.96 16 22 C -0.04 -0.58 12.09 66.97 0.81 0.23 16 23 O -0.19 -3.67 10.65 -2.43 -0.03 -3.69 16 24 C 0.12 2.28 7.58 83.32 0.63 2.91 16 25 C -0.09 -2.78 5.27 30.57 0.16 -2.62 16 26 C 0.14 5.82 6.41 86.43 0.55 6.37 16 27 H 0.25 14.10 8.31 -92.71 -0.77 13.32 16 28 H 0.06 2.91 5.97 -2.39 -0.01 2.89 16 29 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 30 H 0.07 2.12 8.14 -2.38 -0.02 2.10 16 31 H 0.08 2.13 8.09 -2.39 -0.02 2.11 16 32 H 0.09 2.51 8.06 -2.38 -0.02 2.49 16 33 H 0.05 1.76 7.53 -2.39 -0.02 1.74 16 34 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.12 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.10 1.92 8.10 -2.39 -0.02 1.90 16 37 H 0.08 1.63 8.10 -2.38 -0.02 1.61 16 38 H 0.16 2.22 8.06 -2.91 -0.02 2.20 16 39 H 0.17 1.56 8.06 -2.92 -0.02 1.53 16 40 H 0.24 1.11 8.06 -2.91 -0.02 1.09 16 41 H 0.10 1.51 8.11 -2.39 -0.02 1.49 16 42 H 0.11 1.67 8.09 -2.39 -0.02 1.65 16 43 H 0.06 1.84 7.95 -2.39 -0.02 1.82 16 44 H 0.07 2.16 8.14 -2.38 -0.02 2.14 16 45 H 0.05 2.08 7.92 -2.39 -0.02 2.06 16 46 H 0.00 0.12 7.60 -2.39 -0.02 0.11 16 Total: -1.00 -71.50 374.23 4.36 -67.13 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: 0.96 Total: 12.23 kcal Atomic # 6 Polarization: -2.12 SS G_CDS: 6.25 Total: 4.12 kcal Atomic # 7 Polarization: -100.27 SS G_CDS: -4.79 Total: -105.06 kcal Atomic # 8 Polarization: -24.54 SS G_CDS: -0.08 Total: -24.62 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Total: -71.50 4.36 -67.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050429591.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.861 kcal (2) G-P(sol) polarization free energy of solvation -71.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds